Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47299 * 2 1 4 4 C 1.52995 * 109.47548 * 239.99655 * 2 1 3 5 5 C 1.52995 * 109.47409 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47114 * 59.99857 * 5 4 2 7 7 C 1.52996 * 109.47207 * 299.99783 * 6 5 4 8 8 C 1.53000 * 109.47045 * 60.00596 * 7 6 5 9 9 H 1.08996 * 109.47442 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47404 * 59.99192 * 8 7 6 11 11 O 1.21281 * 120.00388 * 247.95030 * 10 8 7 12 12 N 1.34782 * 119.99645 * 67.94845 * 10 8 7 13 13 C 1.47021 * 125.64540 * 4.52315 * 12 10 8 14 14 C 1.54338 * 107.26361 * 178.84852 * 13 12 10 15 15 C 1.55155 * 103.02047 * 338.13743 * 14 13 12 16 16 O 1.42895 * 111.00662 * 277.23495 * 15 14 13 17 17 C 1.50699 * 111.00623 * 153.38082 * 15 14 13 18 18 H 1.08001 * 119.99831 * 11.64430 * 17 15 14 19 19 C 1.37874 * 120.00161 * 191.64712 * 17 15 14 20 20 N 1.31517 * 119.99707 * 173.26087 * 19 17 15 21 21 Si 1.86799 * 120.00300 * 353.26138 * 19 17 15 22 22 H 1.48497 * 109.46955 * 93.37668 * 21 19 17 23 23 H 1.48498 * 109.47441 * 213.38199 * 21 19 17 24 24 H 1.48500 * 109.46747 * 333.37880 * 21 19 17 25 25 C 1.47420 * 125.64897 * 184.82537 * 12 10 8 26 26 H 1.09000 * 109.47196 * 300.00771 * 1 2 3 27 27 H 1.09006 * 109.46346 * 60.00291 * 1 2 3 28 28 H 1.08999 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47103 * 300.00465 * 4 2 1 30 30 H 1.09001 * 109.46870 * 59.99770 * 4 2 1 31 31 H 1.08999 * 109.46955 * 300.00050 * 5 4 2 32 32 H 1.08996 * 109.47304 * 180.02562 * 5 4 2 33 33 H 1.09010 * 109.47122 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47389 * 60.00680 * 6 5 4 35 35 H 1.08999 * 109.47498 * 300.00197 * 7 6 5 36 36 H 1.09006 * 109.47360 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.88231 * 298.39050 * 13 12 10 38 38 H 1.09005 * 109.88309 * 59.55948 * 13 12 10 39 39 H 1.09000 * 110.84753 * 219.67533 * 14 13 12 40 40 H 1.09000 * 110.66721 * 96.52009 * 14 13 12 41 41 H 0.96704 * 113.99910 * 292.19324 * 16 15 14 42 42 H 0.97003 * 119.99561 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.36940 * 322.93709 * 25 12 10 44 44 H 1.09007 * 110.36697 * 85.25812 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 2.0395 -0.7215 1.2494 9 1 1.6761 -0.2080 2.1395 10 6 1.5367 -2.1421 1.2491 11 8 0.9628 -2.5821 0.2754 12 7 1.7248 -2.9238 2.3309 13 6 2.3169 -2.4938 3.6061 14 6 2.3020 -3.7131 4.5522 15 6 1.1932 -4.6129 3.9454 16 8 -0.1015 -4.1961 4.3834 17 6 1.4324 -6.0632 4.2775 18 1 2.1733 -6.3331 5.0156 19 6 0.7055 -7.0456 3.6392 20 7 1.0036 -8.3124 3.8293 21 14 -0.7025 -6.5775 2.5045 22 1 -0.2040 -6.4869 1.1086 23 1 -1.7668 -7.6100 2.5841 24 1 -1.2560 -5.2632 2.9187 25 6 1.3767 -4.3529 2.4293 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6767 -1.7489 -1.2491 30 1 1.6767 -0.2075 -2.1391 31 1 3.9337 0.3057 -1.2486 32 1 3.9334 -1.2353 -2.1389 33 1 5.1696 -1.4433 0.0010 34 1 3.7159 -2.4709 0.0004 35 1 3.9332 0.3056 1.2498 36 1 3.9321 -1.2363 2.1398 37 1 3.3418 -2.1597 3.4449 38 1 1.7247 -1.6860 4.0361 39 1 2.0425 -3.4131 5.5675 40 1 3.2648 -4.2240 4.5366 41 1 -0.2628 -4.3391 5.3261 42 1 0.4919 -9.0036 3.3805 43 1 0.4487 -4.5550 1.8946 44 1 2.1850 -4.9683 2.0340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = -91.760618 kcal Electronic energy + Delta-G solvation = -24220.730852 eV Core-core repulsion = 20944.510515 eV Total energy + Delta-G solvation = -3276.220338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58180 -38.34988 -36.53127 -34.61674 -32.49170 -32.44968 -31.37117 -29.88827 -28.52513 -26.52124 -25.05515 -23.46129 -22.25296 -21.28715 -20.53378 -19.79580 -18.42681 -17.37714 -16.54048 -15.65185 -15.44283 -15.11454 -14.70288 -14.48559 -14.11987 -13.89161 -13.69012 -13.33702 -13.20369 -12.82584 -12.65842 -12.28879 -12.26978 -11.97165 -11.86783 -11.70570 -11.45285 -11.41848 -11.16562 -10.90412 -10.76454 -10.65059 -10.58591 -10.33174 -10.11316 -10.03744 -9.93456 -9.10661 -8.90558 -8.70024 -8.45564 -8.04511 -6.26492 -4.38908 3.03763 3.32475 3.41618 3.52321 3.67062 4.40559 4.59039 4.69197 4.76893 5.01311 5.03867 5.18183 5.18883 5.23608 5.31111 5.42020 5.46733 5.49899 5.53749 5.64124 5.70571 5.74943 5.85987 5.88781 5.99409 6.01265 6.08047 6.13574 6.20297 6.26930 6.30378 6.38843 6.45620 6.54209 6.57119 6.65773 6.70898 6.83248 7.04436 7.44353 8.06376 8.16278 8.64061 8.71042 8.89148 9.36925 10.83359 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.005833 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.376966 B = 4799.469478 C = 5051.652693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.065 4.065 3 H 0.067 0.933 4 C -0.135 4.135 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.101 4.101 9 H 0.089 0.911 10 C 0.532 3.468 11 O -0.541 6.541 12 N -0.609 5.609 13 C 0.103 3.897 14 C -0.146 4.146 15 C 0.214 3.786 16 O -0.573 6.573 17 C -0.553 4.553 18 H 0.081 0.919 19 C 0.090 3.910 20 N -0.883 5.883 21 Si 0.861 3.139 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.223 1.223 25 C 0.113 3.887 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.364 0.636 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 16.808 -3.798 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.084 4.084 3 H 0.086 0.914 4 C -0.172 4.172 5 C -0.153 4.153 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.122 4.122 9 H 0.107 0.893 10 C 0.321 3.679 11 O -0.420 6.420 12 N -0.342 5.342 13 C -0.020 4.020 14 C -0.184 4.184 15 C 0.174 3.826 16 O -0.379 6.379 17 C -0.590 4.590 18 H 0.099 0.901 19 C -0.116 4.116 20 N -0.518 5.518 21 Si 0.688 3.312 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.146 1.146 25 C -0.009 4.009 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.211 0.789 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.277 16.609 -5.044 17.877 hybrid contribution -0.540 -0.111 0.103 0.560 sum 3.738 16.498 -4.941 17.623 Atomic orbital electron populations 1.22009 0.95056 1.03854 1.00571 1.20851 0.95893 0.97904 0.93712 0.91427 1.21979 0.94653 1.04373 0.96215 1.21497 0.96498 0.99795 0.97473 1.21558 0.99942 1.00037 0.94503 1.21579 0.93045 1.01345 0.98980 1.21360 0.96948 0.93569 1.00318 0.89324 1.20142 0.78970 0.87129 0.81644 1.90521 1.42896 1.75212 1.33385 1.48682 1.60721 1.11826 1.12955 1.22103 0.96978 0.98350 0.84577 1.23186 1.01971 0.95332 0.97912 1.20123 0.80254 0.93053 0.89146 1.86524 1.35575 1.86963 1.28844 1.21165 1.24131 0.87693 1.26029 0.90142 1.24981 0.96549 0.94614 0.95446 1.69928 1.39584 0.99849 1.42478 0.87299 0.82780 0.80524 0.80613 1.20754 1.22301 1.14566 1.22777 1.00607 0.79390 0.98098 0.93552 0.93135 0.90318 0.87895 0.92876 0.92681 0.92378 0.92022 0.91721 0.91117 0.91026 0.92012 0.92180 0.90881 0.90182 0.78868 0.92259 0.91155 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.90 37.16 0.33 -1.81 16 2 C -0.06 -0.83 2.47 -90.62 -0.22 -1.05 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.81 4.93 -26.74 -0.13 -1.94 16 5 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 6 C -0.12 -1.52 5.70 -26.73 -0.15 -1.67 16 7 C -0.11 -1.29 5.36 -26.73 -0.14 -1.43 16 8 C -0.10 -1.36 1.94 -91.77 -0.18 -1.53 16 9 H 0.09 1.09 8.02 -51.93 -0.42 0.68 16 10 C 0.53 9.55 5.26 -10.98 -0.06 9.50 16 11 O -0.54 -11.32 11.66 5.56 0.06 -11.25 16 12 N -0.61 -11.45 3.33 -170.51 -0.57 -12.02 16 13 C 0.10 1.59 6.16 -3.06 -0.02 1.57 16 14 C -0.15 -2.55 6.13 -24.89 -0.15 -2.70 16 15 C 0.21 4.72 0.71 -89.62 -0.06 4.66 16 16 O -0.57 -12.47 10.52 -35.23 -0.37 -12.84 16 17 C -0.55 -14.45 8.84 -34.44 -0.30 -14.76 16 18 H 0.08 2.24 8.04 -52.49 -0.42 1.82 16 19 C 0.09 2.51 5.42 -17.82 -0.10 2.41 16 20 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 21 Si 0.86 21.96 24.05 -169.99 -4.09 17.87 16 22 H -0.28 -7.32 7.10 56.52 0.40 -6.92 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.22 -5.66 5.37 56.52 0.30 -5.36 16 25 C 0.11 2.54 4.81 -2.53 -0.01 2.53 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.32 5.81 -51.93 -0.30 1.02 16 29 H 0.10 1.73 5.23 -51.93 -0.27 1.45 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.81 5.45 -51.93 -0.28 0.53 16 37 H 0.06 0.80 5.80 -51.93 -0.30 0.50 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 41 H 0.36 6.73 9.06 45.56 0.41 7.14 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.76 4.78 -51.93 -0.25 1.52 16 44 H 0.08 1.85 8.03 -51.93 -0.42 1.44 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -30.94 320.84 -7.21 -38.15 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.50 Total: 8.23 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.36 Total: -7.72 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.21 Total: -37.28 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.31 Total: -24.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.09 Total: 17.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.94 -7.21 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.606 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds