Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47351 * 2 1 4 4 C 1.53005 * 109.46756 * 240.01067 * 2 1 3 5 5 C 1.53003 * 109.46756 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47588 * 59.99896 * 5 4 2 7 7 C 1.52999 * 109.46845 * 299.99864 * 6 5 4 8 8 C 1.53001 * 109.47165 * 60.00010 * 7 6 5 9 9 H 1.08998 * 109.47620 * 60.00045 * 8 7 6 10 10 C 1.50703 * 109.47411 * 180.02562 * 8 7 6 11 11 O 1.21276 * 120.00068 * 119.99525 * 10 8 7 12 12 N 1.34777 * 119.99726 * 300.00032 * 10 8 7 13 13 C 1.47424 * 125.64736 * 0.02562 * 12 10 8 14 14 C 1.54911 * 104.83206 * 204.09175 * 13 12 10 15 15 C 1.55156 * 101.58077 * 322.99346 * 14 13 12 16 16 O 1.42898 * 110.71899 * 277.13438 * 15 14 13 17 17 C 1.50702 * 110.71526 * 154.04260 * 15 14 13 18 18 H 1.07994 * 120.00439 * 5.09854 * 17 15 14 19 19 C 1.37882 * 119.99704 * 185.09595 * 17 15 14 20 20 N 1.31510 * 120.00254 * 183.76197 * 19 17 15 21 21 Si 1.86803 * 119.99838 * 3.76344 * 19 17 15 22 22 H 1.48504 * 109.47233 * 84.82398 * 21 19 17 23 23 H 1.48494 * 109.47119 * 204.82396 * 21 19 17 24 24 H 1.48503 * 109.47285 * 324.82462 * 21 19 17 25 25 C 1.47022 * 125.64884 * 179.71452 * 12 10 8 26 26 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46833 * 299.98851 * 1 2 3 28 28 H 1.08995 * 109.46912 * 59.99131 * 1 2 3 29 29 H 1.08995 * 109.47497 * 59.99421 * 4 2 1 30 30 H 1.09008 * 109.46812 * 299.99230 * 4 2 1 31 31 H 1.09005 * 109.46574 * 179.97438 * 5 4 2 32 32 H 1.08997 * 109.47011 * 299.99614 * 5 4 2 33 33 H 1.08998 * 109.47056 * 59.99278 * 6 5 4 34 34 H 1.08996 * 109.46978 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47259 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47197 * 299.99940 * 7 6 5 37 37 H 1.09003 * 110.37008 * 322.93250 * 13 12 10 38 38 H 1.09002 * 110.36523 * 85.14656 * 13 12 10 39 39 H 1.08999 * 110.99925 * 81.06919 * 14 13 12 40 40 H 1.09001 * 111.00235 * 204.87968 * 14 13 12 41 41 H 0.96702 * 114.00240 * 298.55015 * 16 15 14 42 42 H 0.97000 * 120.00101 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.87990 * 298.39467 * 25 12 10 44 44 H 1.08999 * 109.88154 * 59.56161 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7216 -1.2491 6 6 4.0796 -1.4434 0.0000 7 6 3.5696 -0.7223 1.2493 8 6 2.0396 -0.7218 1.2491 9 1 1.6759 -1.7493 1.2488 10 6 1.5373 -0.0110 2.4794 11 8 0.8405 0.9753 2.3678 12 7 1.8625 -0.4714 3.7036 13 6 2.6983 -1.6533 3.9830 14 6 2.2742 -2.1128 5.4002 15 6 2.0300 -0.7540 6.1082 16 8 3.2595 -0.2054 6.5872 17 6 1.0429 -0.9104 7.2362 18 1 0.6776 -1.8913 7.5020 19 6 0.6062 0.1990 7.9288 20 7 -0.1973 0.0561 8.9600 21 14 1.1559 1.9049 7.4023 22 1 0.2655 2.4005 6.3221 23 1 1.0862 2.8278 8.5636 24 1 2.5530 1.8427 6.9027 25 6 1.4479 0.1256 4.9816 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.6766 -0.2072 -2.1393 30 1 1.6766 -1.7488 -1.2495 31 1 3.9332 -1.2357 -2.1390 32 1 3.9337 0.3059 -1.2488 33 1 3.7158 -2.4709 -0.0003 34 1 5.1695 -1.4442 -0.0001 35 1 3.9323 -1.2368 2.1392 36 1 3.9333 0.3052 1.2497 37 1 2.4999 -2.4391 3.2541 38 1 3.7542 -1.3828 3.9702 39 1 1.3589 -2.7034 5.3618 40 1 3.0755 -2.6691 5.8867 41 1 3.7082 -0.7578 7.2419 42 1 -0.5048 0.8366 9.4471 43 1 1.8388 1.1400 5.0610 44 1 0.3601 0.1389 5.0489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = -98.152582 kcal Electronic energy + Delta-G solvation = -23791.290068 eV Core-core repulsion = 20514.792554 eV Total energy + Delta-G solvation = -3276.497514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36513 -38.39936 -37.05869 -34.65917 -32.48826 -32.43187 -31.43320 -29.93962 -28.53407 -26.64207 -24.98750 -23.59123 -22.35772 -21.41609 -20.09354 -19.74072 -18.92175 -17.26421 -16.77788 -15.79999 -15.37518 -14.96142 -14.81465 -14.50502 -14.32420 -14.08341 -14.01931 -13.35973 -12.94139 -12.80829 -12.71477 -12.35590 -12.20845 -12.06992 -11.88731 -11.71651 -11.49664 -11.38202 -11.10900 -10.99028 -10.89915 -10.65096 -10.59508 -10.46222 -10.30251 -10.19775 -10.03642 -9.18553 -9.05716 -8.74727 -8.47652 -8.09203 -6.24029 -4.36624 3.00021 3.31116 3.40653 3.51402 3.62258 4.41874 4.52210 4.57367 4.64308 4.99273 5.02980 5.06793 5.11998 5.17041 5.26751 5.30808 5.33485 5.40357 5.45835 5.58670 5.65875 5.71098 5.72743 5.88573 5.92287 5.94716 5.98001 6.01083 6.06975 6.10363 6.15949 6.24026 6.44907 6.46845 6.53381 6.58224 6.65548 6.78331 7.03806 7.47000 8.01460 8.17356 8.58945 8.70884 8.87665 9.39383 10.86101 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.005132 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.316658 B = 5454.859705 C = 5885.688517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.096 4.096 9 H 0.092 0.908 10 C 0.525 3.475 11 O -0.544 6.544 12 N -0.609 5.609 13 C 0.101 3.899 14 C -0.147 4.147 15 C 0.215 3.785 16 O -0.574 6.574 17 C -0.552 4.552 18 H 0.081 0.919 19 C 0.091 3.909 20 N -0.885 5.885 21 Si 0.864 3.136 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.228 1.228 25 C 0.112 3.888 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.365 0.635 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 -4.983 -17.329 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.117 4.117 9 H 0.111 0.889 10 C 0.314 3.686 11 O -0.423 6.423 12 N -0.342 5.342 13 C -0.022 4.022 14 C -0.185 4.185 15 C 0.175 3.825 16 O -0.380 6.380 17 C -0.590 4.590 18 H 0.099 0.901 19 C -0.115 4.115 20 N -0.521 5.521 21 Si 0.691 3.309 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.151 1.151 25 C -0.010 4.010 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.212 0.788 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.631 -3.866 -17.735 19.690 hybrid contribution 0.214 0.398 0.317 0.552 sum 7.845 -3.467 -17.418 19.415 Atomic orbital electron populations 1.22074 0.94738 1.01414 1.03461 1.20887 0.96262 0.99426 0.92173 0.90727 1.21627 0.95277 1.00664 0.97561 1.21567 0.95884 1.00807 0.97632 1.21514 1.00211 0.99333 0.94254 1.21686 0.93268 1.01811 0.98948 1.21322 0.96811 1.00578 0.92990 0.88946 1.20287 0.80354 0.84608 0.83397 1.90607 1.38755 1.26927 1.86002 1.48679 1.50566 1.29232 1.05752 1.22414 0.94642 0.87142 0.97955 1.23348 1.01711 0.99616 0.93841 1.19974 0.83944 0.87371 0.91178 1.86521 1.38145 1.51195 1.62140 1.21202 1.26321 0.96039 1.15392 0.90147 1.24964 0.93146 0.99689 0.93665 1.69913 1.32565 1.31049 1.18549 0.87226 0.82398 0.83325 0.77994 1.20495 1.22247 1.15110 1.22567 1.00188 0.97185 0.81054 0.93608 0.89597 0.93286 0.91870 0.92008 0.92145 0.91996 0.91846 0.91800 0.90583 0.91555 0.91555 0.91457 0.90240 0.90586 0.78793 0.92262 0.92234 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.87 37.16 0.33 -1.81 16 2 C -0.07 -0.86 1.89 -90.61 -0.17 -1.03 16 3 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 4 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 5 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.12 -1.37 5.01 -26.73 -0.13 -1.50 16 8 C -0.10 -1.28 1.41 -91.77 -0.13 -1.41 16 9 H 0.09 1.13 7.85 -51.93 -0.41 0.72 16 10 C 0.52 9.57 6.92 -10.98 -0.08 9.50 16 11 O -0.54 -11.78 13.98 5.56 0.08 -11.70 16 12 N -0.61 -11.55 3.32 -170.51 -0.57 -12.11 16 13 C 0.10 1.55 5.13 -2.53 -0.01 1.54 16 14 C -0.15 -2.57 6.22 -24.58 -0.15 -2.72 16 15 C 0.22 4.75 0.68 -89.93 -0.06 4.69 16 16 O -0.57 -12.27 10.46 -35.23 -0.37 -12.63 16 17 C -0.55 -14.64 8.73 -34.44 -0.30 -14.94 16 18 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 19 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 20 N -0.88 -26.35 13.96 55.43 0.77 -25.58 16 21 Si 0.86 22.02 23.99 -169.99 -4.08 17.95 16 22 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.23 -5.70 5.39 56.52 0.30 -5.40 16 25 C 0.11 2.55 4.39 -3.06 -0.01 2.54 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.44 5.51 -51.93 -0.29 1.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.86 4.99 -51.93 -0.26 0.60 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 38 H 0.07 0.96 7.07 -51.93 -0.37 0.60 16 39 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.37 6.55 9.10 45.56 0.41 6.96 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.06 1.47 5.69 -51.93 -0.30 1.17 16 44 H 0.08 2.04 7.63 -51.93 -0.40 1.65 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -31.60 326.18 -7.22 -38.82 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.70 Total: 6.67 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.28 Total: -6.32 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.21 Total: -37.69 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.29 Total: -24.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.08 Total: 17.95 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.60 -7.22 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.330 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds