Wall clock time and date at job start Tue Mar 31 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46527 * 2 1 4 4 C 1.52998 * 109.46789 * 240.00243 * 2 1 3 5 5 C 1.50706 * 109.47283 * 59.99748 * 4 2 1 6 6 O 1.21278 * 119.99623 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00036 * 179.97438 * 5 4 2 8 8 C 1.47022 * 125.65048 * 359.69345 * 7 5 4 9 9 C 1.54331 * 107.26635 * 178.84969 * 8 7 5 10 10 C 1.55159 * 103.02275 * 338.13974 * 9 8 7 11 11 O 1.42900 * 111.00359 * 277.23562 * 10 9 8 12 12 C 1.50693 * 111.03649 * 153.39686 * 10 9 8 13 13 H 1.08008 * 120.00070 * 247.78420 * 12 10 9 14 14 C 1.37870 * 120.00213 * 67.79048 * 12 10 9 15 15 N 1.31514 * 120.00174 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 120.00096 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47028 * 60.00022 * 16 14 12 18 18 H 1.48505 * 109.46812 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47167 * 299.99687 * 16 14 12 20 20 C 1.47423 * 125.64741 * 180.02562 * 7 5 4 21 21 C 1.52996 * 109.47247 * 120.00257 * 2 1 3 22 22 C 1.53002 * 117.49888 * 231.25372 * 21 2 1 23 23 C 1.53000 * 117.50107 * 299.91134 * 21 2 1 24 24 H 1.09006 * 109.46786 * 299.99646 * 1 2 3 25 25 H 1.08998 * 109.47808 * 60.00018 * 1 2 3 26 26 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.46306 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47293 * 299.99939 * 3 2 1 29 29 H 1.09000 * 109.46895 * 60.00850 * 3 2 1 30 30 H 1.08997 * 109.47080 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47221 * 299.99806 * 4 2 1 32 32 H 1.09005 * 109.87979 * 298.39546 * 8 7 5 33 33 H 1.09004 * 109.88038 * 59.55769 * 8 7 5 34 34 H 1.08999 * 110.85235 * 219.67287 * 9 8 7 35 35 H 1.09002 * 110.66974 * 96.52227 * 9 8 7 36 36 H 0.96697 * 113.99767 * 292.19030 * 11 10 9 37 37 H 0.97001 * 120.00250 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.36814 * 322.92960 * 20 7 5 39 39 H 1.08994 * 110.36976 * 85.25322 * 20 7 5 40 40 H 1.09002 * 115.54951 * 85.58346 * 21 2 1 41 41 H 1.09000 * 117.49996 * 215.00804 * 22 21 2 42 42 H 1.08999 * 117.49664 * 0.02562 * 22 21 2 43 43 H 1.09008 * 117.49673 * 359.97438 * 23 21 2 44 44 H 1.08999 * 117.49942 * 144.97366 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4798 6 8 0.8407 0.9756 -2.3684 7 7 1.8635 -0.4709 -3.7038 8 6 2.7026 -1.6455 -3.9823 9 6 2.7753 -1.8034 -5.5158 10 6 1.5173 -1.0390 -6.0060 11 8 0.3534 -1.8645 -5.9276 12 6 1.7127 -0.5174 -7.4062 13 1 1.7811 0.5461 -7.5817 14 6 1.8040 -1.3977 -8.4633 15 7 1.7211 -2.6927 -8.2497 16 14 2.0455 -0.7510 -10.1992 17 1 3.3105 0.0238 -10.2672 18 1 2.1127 -1.8919 -11.1475 19 1 0.9059 0.1289 -10.5626 20 6 1.4432 0.1243 -4.9854 21 6 2.0401 -0.7213 1.2492 22 6 3.0764 0.0039 2.1100 23 6 1.6376 -0.1484 2.6096 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1299 -0.7208 -1.2496 31 1 1.6766 -1.7489 -1.2493 32 1 3.7022 -1.4918 -3.5757 33 1 2.2534 -2.5351 -3.5407 34 1 2.7233 -2.8543 -5.8005 35 1 3.6828 -1.3437 -5.9073 36 1 0.3548 -2.6062 -6.5480 37 1 1.7857 -3.3121 -8.9934 38 1 0.4228 0.5006 -4.9125 39 1 2.1241 0.9254 -5.2730 40 1 2.1254 -1.8047 1.1646 41 1 3.8435 -0.6023 2.5917 42 1 3.3945 0.9950 1.7866 43 1 1.0097 0.7426 2.6146 44 1 1.4576 -0.8549 3.4199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:53 Heat of formation + Delta-G solvation = -67.654590 kcal Electronic energy + Delta-G solvation = -23158.755384 eV Core-core repulsion = 19883.580362 eV Total energy + Delta-G solvation = -3275.175022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08685 -38.53763 -37.10254 -34.33887 -33.41659 -32.15796 -30.12732 -28.56887 -27.52415 -27.19493 -24.98991 -23.37142 -22.29703 -22.11260 -19.78093 -18.81629 -18.13269 -17.26053 -16.75750 -15.85304 -15.37354 -15.07423 -14.99684 -14.59017 -14.02173 -13.70993 -13.63211 -13.38397 -13.04881 -12.44706 -12.37937 -12.01763 -11.80270 -11.67443 -11.54969 -11.38110 -11.32349 -11.12379 -10.97245 -10.85034 -10.82844 -10.67808 -10.59477 -10.50743 -10.28379 -10.05045 -9.86423 -9.43471 -9.02788 -8.69185 -8.22990 -7.93521 -6.31969 -4.39818 3.12082 3.19955 3.25000 3.28057 3.56315 3.77099 4.24366 4.60449 4.75721 4.87092 4.92547 4.98097 5.16435 5.21486 5.38269 5.52266 5.54470 5.54942 5.71112 5.74452 5.78835 5.82932 5.89594 5.91943 6.00839 6.02572 6.05813 6.16415 6.24733 6.26920 6.39086 6.44054 6.62126 6.65681 6.73121 6.88022 6.99703 7.28623 7.30848 7.71427 7.97632 8.19168 8.61613 8.72231 9.29303 9.46133 10.75667 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.003635 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.431577 B = 7701.190633 C = 7814.612339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.155 4.155 4 C -0.124 4.124 5 C 0.524 3.476 6 O -0.548 6.548 7 N -0.607 5.607 8 C 0.100 3.900 9 C -0.140 4.140 10 C 0.249 3.751 11 O -0.584 6.584 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.119 3.881 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.178 4.178 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.270 0.730 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 0.799 15.011 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.212 4.212 4 C -0.164 4.164 5 C 0.313 3.687 6 O -0.428 6.428 7 N -0.339 5.339 8 C -0.023 4.023 9 C -0.179 4.179 10 C 0.208 3.792 11 O -0.394 6.394 12 C -0.575 4.575 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.002 4.002 21 C -0.160 4.160 22 C -0.223 4.223 23 C -0.215 4.215 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.960 1.584 15.505 15.865 hybrid contribution 0.522 -0.435 -1.351 1.513 sum 3.482 1.148 14.154 14.621 Atomic orbital electron populations 1.22074 0.93833 1.01459 1.03331 1.19738 0.96104 0.94818 0.90716 1.22220 0.99930 0.95649 1.03410 1.21680 1.02016 1.00331 0.92395 1.20156 0.80437 0.84557 0.83519 1.90520 1.39205 1.27223 1.85862 1.48657 1.50053 1.29371 1.05849 1.22142 0.92931 0.87605 0.99583 1.23203 1.01545 1.03108 0.89997 1.19574 0.82074 0.85927 0.91593 1.86099 1.43294 1.45339 1.64714 1.21457 1.50815 0.93925 0.91263 0.91707 1.24990 0.93534 0.94773 0.99693 1.69552 1.50213 1.01380 1.32652 0.86453 0.78956 0.78457 0.82993 1.20036 1.21094 1.19963 1.22361 0.99879 0.96545 0.81451 1.22379 1.03396 0.98780 0.91424 1.23149 0.92322 1.02687 1.04152 1.22909 0.98159 1.03278 0.97177 0.93350 0.89449 0.93592 0.93338 0.89409 0.93332 0.89401 0.89330 0.92916 0.92436 0.89923 0.91432 0.76281 0.92009 0.91141 0.91278 0.88052 0.89346 0.88124 0.88829 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.02 37.16 0.30 -1.76 16 2 C -0.01 -0.17 0.62 -154.51 -0.10 -0.27 16 3 C -0.16 -2.03 6.77 37.16 0.25 -1.78 16 4 C -0.12 -1.71 3.94 -27.88 -0.11 -1.82 16 5 C 0.52 9.47 7.26 -10.99 -0.08 9.39 16 6 O -0.55 -11.11 11.60 5.56 0.06 -11.04 16 7 N -0.61 -11.79 3.33 -170.50 -0.57 -12.36 16 8 C 0.10 1.78 6.49 -3.06 -0.02 1.76 16 9 C -0.14 -2.94 5.64 -24.89 -0.14 -3.08 16 10 C 0.25 5.95 0.89 -89.61 -0.08 5.87 16 11 O -0.58 -14.91 13.18 -35.23 -0.46 -15.38 16 12 C -0.54 -13.82 8.25 -34.45 -0.28 -14.10 16 13 H 0.06 1.66 7.77 -52.48 -0.41 1.25 16 14 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 15 N -0.90 -22.87 10.79 55.43 0.60 -22.27 16 16 Si 0.90 19.97 29.54 -169.99 -5.02 14.94 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.12 2.64 6.08 -2.52 -0.02 2.63 16 21 C -0.14 -1.50 5.14 -90.62 -0.47 -1.97 16 22 C -0.19 -1.77 9.57 -26.69 -0.26 -2.02 16 23 C -0.18 -1.70 9.39 -26.70 -0.25 -1.95 16 24 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 25 H 0.09 1.46 5.51 -51.93 -0.29 1.17 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.58 6.97 -51.92 -0.36 0.22 16 28 H 0.09 1.40 5.51 -51.93 -0.29 1.11 16 29 H 0.05 0.57 7.07 -51.93 -0.37 0.21 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 35 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.39 9.92 6.93 45.56 0.32 10.23 16 37 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 38 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 39 H 0.07 1.49 8.02 -51.93 -0.42 1.07 16 40 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.97 5.85 -51.93 -0.30 0.67 16 43 H 0.09 0.91 7.07 -51.92 -0.37 0.55 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -26.95 338.44 -8.25 -35.20 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.62 Total: 13.18 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.34 Total: -7.36 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.03 Total: -34.63 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.40 Total: -26.42 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.95 -8.25 -35.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.458 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds