Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46779 * 2 1 4 4 H 1.08999 * 110.53731 * 52.39329 * 3 2 1 5 5 C 1.54256 * 110.49120 * 289.77309 * 3 2 1 6 6 C 1.53875 * 106.60295 * 217.71280 * 5 3 2 7 7 C 1.54263 * 106.59643 * 0.02562 * 6 5 3 8 8 C 1.54893 * 104.19760 * 23.61005 * 7 6 5 9 9 H 1.08996 * 110.91436 * 80.44150 * 8 7 6 10 10 C 1.50697 * 110.75804 * 203.74525 * 8 7 6 11 11 O 1.21280 * 120.00192 * 112.19588 * 10 8 7 12 12 N 1.34774 * 119.99861 * 292.19317 * 10 8 7 13 13 C 1.47434 * 125.65021 * 175.12769 * 12 10 8 14 14 C 1.54907 * 104.83237 * 155.90620 * 13 12 10 15 15 C 1.55163 * 101.61559 * 36.99410 * 14 13 12 16 16 O 1.42897 * 110.72281 * 82.87864 * 15 14 13 17 17 C 1.50699 * 110.71779 * 206.15149 * 15 14 13 18 18 H 1.08009 * 120.00035 * 28.01256 * 17 15 14 19 19 C 1.37874 * 120.00167 * 208.01007 * 17 15 14 20 20 N 1.31513 * 120.00057 * 170.43705 * 19 17 15 21 21 Si 1.86799 * 119.99900 * 350.43442 * 19 17 15 22 22 H 1.48503 * 109.46990 * 84.75383 * 21 19 17 23 23 H 1.48500 * 109.47391 * 204.75694 * 21 19 17 24 24 H 1.48507 * 109.47281 * 324.75752 * 21 19 17 25 25 C 1.47023 * 125.64909 * 355.16931 * 12 10 8 26 26 H 1.09003 * 109.46850 * 59.99749 * 1 2 3 27 27 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47227 * 299.99581 * 1 2 3 29 29 H 1.09005 * 109.46982 * 240.00529 * 2 1 3 30 30 H 1.08989 * 109.47065 * 120.00300 * 2 1 3 31 31 H 1.08995 * 110.03529 * 337.00264 * 5 3 2 32 32 H 1.09000 * 110.03365 * 98.37997 * 5 3 2 33 33 H 1.09002 * 110.03468 * 119.28321 * 6 5 3 34 34 H 1.08998 * 110.03260 * 240.71928 * 6 5 3 35 35 H 1.09005 * 110.48677 * 264.93109 * 7 6 5 36 36 H 1.08998 * 110.48830 * 142.28907 * 7 6 5 37 37 H 1.08999 * 110.35971 * 37.06752 * 13 12 10 38 38 H 1.08993 * 110.45666 * 274.79502 * 13 12 10 39 39 H 1.08998 * 111.00410 * 155.08514 * 14 13 12 40 40 H 1.08994 * 111.00416 * 278.90102 * 14 13 12 41 41 H 0.96704 * 113.99951 * 65.22469 * 16 15 14 42 42 H 0.97002 * 119.99783 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.88609 * 300.44124 * 25 12 10 44 44 H 1.08996 * 109.88197 * 61.45591 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0106 0.8086 5 6 1.7591 2.1146 -1.3598 6 6 2.9737 3.0074 -1.6682 7 6 3.9507 2.8463 -0.4853 8 6 3.5838 1.4711 0.1259 9 1 4.0334 0.6590 -0.4454 10 6 4.0029 1.4003 1.5716 11 8 3.1627 1.3526 2.4450 12 7 5.3114 1.3898 1.8942 13 6 5.8595 1.4253 3.2624 14 6 7.2660 0.7873 3.1428 15 6 7.7346 1.3203 1.7630 16 8 8.2758 2.6370 1.8868 17 6 8.7408 0.3848 1.1438 18 1 8.7177 -0.6683 1.3829 19 6 9.6908 0.8730 0.2720 20 7 10.6805 0.1015 -0.1215 21 14 9.5721 2.6303 -0.3503 22 1 10.2018 3.5473 0.6335 23 1 10.2760 2.7428 -1.6530 24 1 8.1440 2.9979 -0.5259 25 6 6.4288 1.3420 0.9398 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6465 1.3565 -2.1348 32 1 0.8555 2.7209 -1.2970 33 1 3.4508 2.6826 -2.5929 34 1 2.6601 4.0477 -1.7548 35 1 3.7996 3.6410 0.2453 36 1 4.9815 2.8434 -0.8396 37 1 5.2338 0.8408 3.9368 38 1 5.9381 2.4537 3.6147 39 1 7.9225 1.1364 3.9399 40 1 7.2025 -0.3008 3.1403 41 1 9.0865 2.6812 2.4121 42 1 11.3486 0.4449 -0.7352 43 1 6.3593 0.4397 0.3325 44 1 6.4065 2.2230 0.2985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -108.255943 kcal Electronic energy + Delta-G solvation = -23613.477229 eV Core-core repulsion = 20336.541600 eV Total energy + Delta-G solvation = -3276.935629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12904 -38.36164 -37.01510 -34.75137 -33.18045 -32.43471 -30.74503 -29.06087 -28.23857 -27.53642 -25.11223 -23.42334 -22.36766 -20.86228 -20.03564 -19.65112 -18.68976 -17.50679 -16.86955 -15.87488 -15.30851 -15.24181 -15.15936 -14.47240 -14.30378 -13.93060 -13.67813 -13.23998 -13.20480 -13.01467 -12.51318 -12.27809 -12.21363 -11.97622 -11.89514 -11.79252 -11.52922 -11.23710 -11.15633 -10.81558 -10.68676 -10.61915 -10.46858 -10.38895 -10.38276 -10.29880 -10.24316 -9.47392 -9.30974 -8.70961 -8.55591 -8.08861 -6.29278 -4.40432 3.00853 3.35047 3.41209 3.50314 3.59862 4.38001 4.48924 4.61691 4.71621 4.90770 5.08844 5.09914 5.15408 5.24392 5.36246 5.44358 5.49813 5.56112 5.60739 5.66148 5.68509 5.73684 5.76680 5.87311 5.92857 5.97213 6.01778 6.04604 6.11973 6.19444 6.23275 6.29430 6.38566 6.40886 6.51800 6.54374 6.68290 6.78968 6.92350 7.34748 8.02392 8.03240 8.55642 8.57181 8.73963 9.31619 10.79697 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.005417 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.105894 B = 5167.539030 C = 5725.317151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.086 0.914 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.108 4.108 9 H 0.100 0.900 10 C 0.533 3.467 11 O -0.558 6.558 12 N -0.611 5.611 13 C 0.108 3.892 14 C -0.148 4.148 15 C 0.220 3.780 16 O -0.562 6.562 17 C -0.556 4.556 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.883 5.883 21 Si 0.948 3.052 22 H -0.291 1.291 23 H -0.324 1.324 24 H -0.274 1.274 25 C 0.105 3.895 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.376 0.624 42 H 0.268 0.732 43 H 0.081 0.919 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 3.707 -1.109 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.104 0.896 5 C -0.157 4.157 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.129 4.129 9 H 0.118 0.882 10 C 0.322 3.678 11 O -0.437 6.437 12 N -0.344 5.344 13 C -0.015 4.015 14 C -0.186 4.186 15 C 0.180 3.820 16 O -0.371 6.371 17 C -0.593 4.593 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.517 5.517 21 Si 0.783 3.217 22 H -0.219 1.219 23 H -0.256 1.256 24 H -0.200 1.200 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.537 3.779 -1.138 15.063 hybrid contribution 0.723 0.650 -0.059 0.974 sum -13.813 4.429 -1.198 14.555 Atomic orbital electron populations 1.21741 0.95984 1.01199 1.01617 1.21539 0.95784 0.96008 1.01980 1.21870 0.92818 0.96655 0.97648 0.89568 1.22233 0.97895 0.98629 0.96918 1.22115 0.95815 0.99832 0.98237 1.22338 1.00092 0.95373 0.97439 1.22318 0.97478 0.99954 0.93166 0.88178 1.20118 0.80804 0.75896 0.90946 1.90625 1.50516 1.51684 1.50871 1.48678 1.05303 1.71556 1.08882 1.22193 0.95014 1.00340 0.83933 1.23392 0.94245 1.01068 0.99913 1.20051 0.90577 0.80560 0.90846 1.86109 1.45299 1.31701 1.73951 1.21208 1.13293 0.96011 1.28824 0.89962 1.25175 0.93934 0.99327 0.94840 1.69969 1.11860 1.37647 1.32256 0.85731 0.77896 0.82667 0.75358 1.21877 1.25557 1.20029 1.22770 0.84920 1.01746 0.92295 0.92927 0.93106 0.92748 0.92190 0.91655 0.91634 0.91891 0.91545 0.91790 0.91386 0.90508 0.91526 0.92051 0.90619 0.90437 0.77552 0.92271 0.90115 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.79 37.16 0.36 -1.17 16 2 C -0.12 -1.41 5.32 -26.73 -0.14 -1.55 16 3 C -0.07 -0.92 1.94 -88.95 -0.17 -1.10 16 4 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 5 C -0.12 -1.28 5.69 -25.62 -0.15 -1.42 16 6 C -0.12 -1.37 6.80 -25.61 -0.17 -1.54 16 7 C -0.11 -1.58 5.76 -25.07 -0.14 -1.73 16 8 C -0.11 -1.60 2.05 -89.76 -0.18 -1.78 16 9 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 10 C 0.53 9.66 7.16 -10.99 -0.08 9.58 16 11 O -0.56 -11.33 15.95 5.56 0.09 -11.25 16 12 N -0.61 -11.43 3.33 -170.49 -0.57 -12.00 16 13 C 0.11 1.92 6.92 -2.52 -0.02 1.90 16 14 C -0.15 -2.71 6.24 -24.58 -0.15 -2.86 16 15 C 0.22 4.64 0.69 -89.91 -0.06 4.58 16 16 O -0.56 -11.61 8.81 -35.23 -0.31 -11.93 16 17 C -0.56 -14.04 8.68 -34.44 -0.30 -14.34 16 18 H 0.08 2.28 8.01 -52.48 -0.42 1.86 16 19 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 20 N -0.88 -25.11 13.96 55.43 0.77 -24.34 16 21 Si 0.95 22.21 24.61 -169.99 -4.18 18.03 16 22 H -0.29 -6.63 6.99 56.52 0.39 -6.23 16 23 H -0.32 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.27 -6.32 5.82 56.52 0.33 -5.99 16 25 C 0.10 2.09 5.32 -3.04 -0.02 2.07 16 26 H 0.05 0.48 7.62 -51.93 -0.40 0.09 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 30 H 0.06 0.92 8.14 -51.94 -0.42 0.50 16 31 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.08 1.12 6.55 -51.93 -0.34 0.78 16 37 H 0.07 1.16 7.99 -51.93 -0.42 0.74 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.45 8.00 -51.93 -0.42 1.04 16 41 H 0.38 6.92 8.48 45.56 0.39 7.31 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 43 H 0.08 1.62 7.81 -51.93 -0.41 1.22 16 44 H 0.07 1.37 5.03 -51.93 -0.26 1.11 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -29.40 336.50 -7.35 -36.75 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.90 Total: 7.18 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.32 Total: -7.52 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.21 Total: -36.33 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.22 Total: -23.17 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.18 Total: 18.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.40 -7.35 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.509 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds