Wall clock time and date at job start Tue Mar 31 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.09002 * 110.05770 * 53.27812 * 3 2 1 5 5 C 1.54268 * 110.03020 * 291.86404 * 3 2 1 6 6 C 1.54898 * 104.19476 * 217.10799 * 5 3 2 7 7 C 1.54887 * 102.74709 * 37.93926 * 6 5 3 8 8 C 1.53876 * 110.03045 * 174.69913 * 3 2 1 9 9 H 1.09006 * 110.02742 * 238.61857 * 8 3 2 10 10 C 1.50698 * 110.03410 * 359.97438 * 8 3 2 11 11 O 1.21283 * 120.00168 * 85.72686 * 10 8 3 12 12 N 1.34773 * 120.00081 * 265.73290 * 10 8 3 13 13 C 1.47430 * 125.64775 * 0.02562 * 12 10 8 14 14 C 1.54908 * 104.82999 * 155.82761 * 13 12 10 15 15 C 1.55153 * 101.58416 * 37.00821 * 14 13 12 16 16 O 1.42898 * 110.72174 * 83.04121 * 15 14 13 17 17 C 1.50702 * 110.71758 * 206.13236 * 15 14 13 18 18 H 1.08001 * 119.99531 * 118.54962 * 17 15 14 19 19 C 1.37872 * 120.00389 * 298.54582 * 17 15 14 20 20 N 1.31517 * 120.00118 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00098 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47106 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47331 * 299.99905 * 21 19 17 24 24 H 1.48501 * 109.47392 * 60.00213 * 21 19 17 25 25 C 1.47023 * 125.65011 * 179.97438 * 12 10 8 26 26 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47056 * 300.00094 * 1 2 3 28 28 H 1.09003 * 109.47275 * 60.00368 * 1 2 3 29 29 H 1.09000 * 109.47096 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.47193 * 120.00139 * 2 1 3 31 31 H 1.08994 * 110.48784 * 335.78199 * 5 3 2 32 32 H 1.09000 * 110.48906 * 98.43355 * 5 3 2 33 33 H 1.08989 * 110.76055 * 156.25752 * 6 5 3 34 34 H 1.09007 * 110.75431 * 279.44781 * 6 5 3 35 35 H 1.09003 * 110.48541 * 203.38154 * 7 6 5 36 36 H 1.09003 * 110.48788 * 80.73929 * 7 6 5 37 37 H 1.08997 * 110.36446 * 36.98743 * 13 12 10 38 38 H 1.08999 * 110.45418 * 274.71163 * 13 12 10 39 39 H 1.09005 * 111.00691 * 278.92871 * 14 13 12 40 40 H 1.09001 * 111.03692 * 155.09975 * 14 13 12 41 41 H 0.96702 * 114.00662 * 63.83823 * 16 15 14 42 42 H 0.96994 * 120.00401 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88234 * 61.68184 * 25 12 10 44 44 H 1.09008 * 109.88179 * 300.52033 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9990 0.8207 5 6 1.7072 2.1206 -1.3451 6 6 2.9370 3.0172 -1.6330 7 6 4.1180 2.1477 -1.1350 8 6 3.5728 1.4597 0.1336 9 1 3.8640 2.0238 1.0197 10 6 4.0990 0.0504 0.2238 11 8 4.3289 -0.5770 -0.7883 12 7 4.3139 -0.5127 1.4292 13 6 4.0777 0.1327 2.7335 14 6 3.8649 -1.0398 3.7233 15 6 4.8775 -2.0867 3.1886 16 8 6.1890 -1.8245 3.6918 17 6 4.4401 -3.4834 3.5478 18 1 4.2225 -4.1983 2.7681 19 6 4.3177 -3.8485 4.8717 20 7 4.5823 -2.9777 5.8211 21 14 3.7763 -5.5799 5.3169 22 1 3.7242 -5.7178 6.7946 23 1 2.4296 -5.8393 4.7474 24 1 4.7451 -6.5595 4.7627 25 6 4.8217 -1.8728 1.6613 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5878 1.3735 -2.1297 32 1 0.8060 2.7270 -1.2540 33 1 3.0279 3.2173 -2.7005 34 1 2.8758 3.9491 -1.0707 35 1 4.9762 2.7737 -0.8905 36 1 4.3880 1.4049 -1.8856 37 1 3.1871 0.7596 2.6908 38 1 4.9440 0.7251 3.0278 39 1 2.8444 -1.4188 3.6665 40 1 4.1124 -0.7417 4.7421 41 1 6.2656 -1.9073 4.6523 42 1 4.4966 -3.2346 6.7525 43 1 5.8203 -1.9732 1.2361 44 1 4.1491 -2.6018 1.2092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:45 Heat of formation + Delta-G solvation = -109.017147 kcal Electronic energy + Delta-G solvation = -23731.439016 eV Core-core repulsion = 20454.470379 eV Total energy + Delta-G solvation = -3276.968637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.27561 -38.06214 -36.64556 -34.31838 -33.04878 -32.22306 -30.20650 -29.03868 -28.06066 -27.53026 -25.09965 -22.83969 -22.50249 -20.89575 -20.34318 -19.50371 -18.04560 -17.22742 -16.62456 -15.78538 -15.37680 -15.05227 -14.92579 -14.40745 -14.17320 -13.98207 -13.54701 -13.16332 -13.05071 -12.61649 -12.15135 -12.11274 -11.97830 -11.50477 -11.46499 -11.39354 -11.34635 -11.16856 -11.02285 -10.88612 -10.74748 -10.65381 -10.55925 -10.51585 -10.42234 -10.30573 -10.11533 -9.40763 -9.17869 -8.68090 -8.23133 -7.95816 -6.29815 -4.37638 3.11004 3.21107 3.25774 3.29319 3.58687 4.25933 4.51463 4.61906 4.70606 4.97185 5.12756 5.23905 5.27664 5.39183 5.50720 5.56686 5.58595 5.62299 5.65202 5.72871 5.77091 5.87371 5.89014 5.92440 6.01837 6.04662 6.10255 6.16168 6.24029 6.27355 6.38807 6.42027 6.46817 6.54339 6.71498 6.92244 6.99793 7.30198 7.35097 7.71974 8.00993 8.17174 8.64161 8.71200 9.29361 9.38412 10.77471 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.004814 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.692698 B = 5814.648052 C = 6250.857027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.074 4.074 4 H 0.076 0.924 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.109 4.109 9 H 0.087 0.913 10 C 0.535 3.465 11 O -0.556 6.556 12 N -0.609 5.609 13 C 0.095 3.905 14 C -0.133 4.133 15 C 0.247 3.753 16 O -0.586 6.586 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.123 3.877 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.382 0.618 42 H 0.269 0.731 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 11.183 -7.256 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.130 4.130 9 H 0.105 0.895 10 C 0.324 3.676 11 O -0.435 6.435 12 N -0.341 5.341 13 C -0.028 4.028 14 C -0.172 4.172 15 C 0.207 3.793 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.129 4.129 20 N -0.536 5.536 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.200 1.200 25 C 0.001 3.999 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.695 10.989 -8.283 14.893 hybrid contribution -0.419 -0.994 1.175 1.596 sum -6.115 9.995 -7.108 13.704 Atomic orbital electron populations 1.21738 0.95829 1.01536 1.01280 1.21863 0.95957 0.95750 1.03464 1.21674 0.92431 0.96885 0.98261 0.90546 1.22444 0.97600 0.98456 0.96875 1.22472 0.94868 0.97931 1.00745 1.22354 0.97501 0.98702 0.96482 1.22014 0.96616 0.93869 1.00521 0.89488 1.19973 0.77339 0.88257 0.82054 1.90627 1.53633 1.64553 1.34695 1.48687 1.63715 1.16278 1.05430 1.22490 0.99424 0.97219 0.83651 1.23276 1.01220 0.94446 0.98222 1.19444 0.80597 0.92599 0.86655 1.86123 1.31915 1.93235 1.28221 1.21490 1.46361 0.97047 0.92493 0.91865 1.24974 0.93959 0.97837 0.96161 1.69683 1.48945 1.34556 1.00387 0.86487 0.79332 0.84029 0.77214 1.21099 1.20068 1.19988 1.22031 0.98297 0.81705 0.97838 0.92838 0.92956 0.92966 0.90984 0.91118 0.91240 0.91744 0.91544 0.91640 0.91675 0.89655 0.92217 0.92104 0.91543 0.89438 0.76735 0.92159 0.92310 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.77 37.16 0.36 -1.38 16 2 C -0.13 -1.91 4.12 -26.73 -0.11 -2.02 16 3 C -0.07 -0.92 2.93 -89.50 -0.26 -1.18 16 4 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.12 -1.25 5.55 -25.07 -0.14 -1.39 16 6 C -0.12 -1.25 6.91 -24.73 -0.17 -1.42 16 7 C -0.11 -1.44 6.31 -25.07 -0.16 -1.60 16 8 C -0.11 -1.55 2.70 -90.66 -0.24 -1.79 16 9 H 0.09 1.14 7.07 -51.93 -0.37 0.78 16 10 C 0.54 9.93 4.69 -10.99 -0.05 9.88 16 11 O -0.56 -11.96 15.34 5.55 0.09 -11.88 16 12 N -0.61 -11.97 2.81 -170.52 -0.48 -12.45 16 13 C 0.09 1.71 6.26 -2.53 -0.02 1.69 16 14 C -0.13 -2.83 5.47 -24.59 -0.13 -2.97 16 15 C 0.25 5.92 0.85 -89.94 -0.08 5.84 16 16 O -0.59 -14.65 13.09 -35.23 -0.46 -15.11 16 17 C -0.54 -13.94 8.21 -34.44 -0.28 -14.22 16 18 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 19 C 0.07 1.86 5.26 -17.82 -0.09 1.77 16 20 N -0.90 -22.76 10.65 55.43 0.59 -22.17 16 21 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.12 2.79 6.22 -3.07 -0.02 2.77 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.55 7.52 -51.93 -0.39 0.16 16 29 H 0.07 1.18 7.09 -51.93 -0.37 0.81 16 30 H 0.07 1.18 6.82 -51.93 -0.35 0.83 16 31 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.94 -0.42 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.27 6.90 -51.93 -0.36 0.91 16 37 H 0.06 0.91 7.50 -51.93 -0.39 0.52 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 40 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 41 H 0.38 9.54 7.42 45.56 0.34 9.88 16 42 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 44 H 0.07 1.63 7.66 -51.92 -0.40 1.23 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -27.51 338.41 -8.41 -35.92 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.83 Total: 11.47 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.40 Total: -6.01 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.11 Total: -34.61 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.38 Total: -26.99 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.51 -8.41 -35.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.095 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds