Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.09002 * 110.05770 * 53.27812 * 3 2 1 5 5 C 1.54268 * 110.03020 * 291.86404 * 3 2 1 6 6 C 1.54898 * 104.19476 * 217.10799 * 5 3 2 7 7 C 1.54887 * 102.74709 * 37.93926 * 6 5 3 8 8 C 1.53876 * 110.03045 * 174.69913 * 3 2 1 9 9 H 1.09006 * 110.02742 * 238.61857 * 8 3 2 10 10 C 1.50698 * 110.03410 * 359.97438 * 8 3 2 11 11 O 1.21283 * 120.00168 * 85.72686 * 10 8 3 12 12 N 1.34773 * 120.00081 * 265.73290 * 10 8 3 13 13 C 1.47430 * 125.64775 * 0.02562 * 12 10 8 14 14 C 1.54908 * 104.82999 * 155.82761 * 13 12 10 15 15 C 1.55153 * 101.58416 * 37.00821 * 14 13 12 16 16 O 1.42898 * 110.72174 * 83.04121 * 15 14 13 17 17 C 1.50702 * 110.71758 * 206.13236 * 15 14 13 18 18 H 1.08001 * 119.99531 * 118.54962 * 17 15 14 19 19 C 1.37872 * 120.00389 * 298.54582 * 17 15 14 20 20 N 1.31517 * 120.00118 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00098 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47106 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47331 * 299.99905 * 21 19 17 24 24 H 1.48501 * 109.47392 * 60.00213 * 21 19 17 25 25 C 1.47023 * 125.65011 * 179.97438 * 12 10 8 26 26 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47056 * 300.00094 * 1 2 3 28 28 H 1.09003 * 109.47275 * 60.00368 * 1 2 3 29 29 H 1.09000 * 109.47096 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.47193 * 120.00139 * 2 1 3 31 31 H 1.08994 * 110.48784 * 335.78199 * 5 3 2 32 32 H 1.09000 * 110.48906 * 98.43355 * 5 3 2 33 33 H 1.08989 * 110.76055 * 156.25752 * 6 5 3 34 34 H 1.09007 * 110.75431 * 279.44781 * 6 5 3 35 35 H 1.09003 * 110.48541 * 203.38154 * 7 6 5 36 36 H 1.09003 * 110.48788 * 80.73929 * 7 6 5 37 37 H 1.08997 * 110.36446 * 36.98743 * 13 12 10 38 38 H 1.08999 * 110.45418 * 274.71163 * 13 12 10 39 39 H 1.09005 * 111.00691 * 278.92871 * 14 13 12 40 40 H 1.09001 * 111.03692 * 155.09975 * 14 13 12 41 41 H 0.96702 * 114.00662 * 63.83823 * 16 15 14 42 42 H 0.96994 * 120.00401 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88234 * 61.68184 * 25 12 10 44 44 H 1.09008 * 109.88179 * 300.52033 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9990 0.8207 5 6 1.7072 2.1206 -1.3451 6 6 2.9370 3.0172 -1.6330 7 6 4.1180 2.1477 -1.1350 8 6 3.5728 1.4597 0.1336 9 1 3.8640 2.0238 1.0197 10 6 4.0990 0.0504 0.2238 11 8 4.3289 -0.5770 -0.7883 12 7 4.3139 -0.5127 1.4292 13 6 4.0777 0.1327 2.7335 14 6 3.8649 -1.0398 3.7233 15 6 4.8775 -2.0867 3.1886 16 8 6.1890 -1.8245 3.6918 17 6 4.4401 -3.4834 3.5478 18 1 4.2225 -4.1983 2.7681 19 6 4.3177 -3.8485 4.8717 20 7 4.5823 -2.9777 5.8211 21 14 3.7763 -5.5799 5.3169 22 1 3.7242 -5.7178 6.7946 23 1 2.4296 -5.8393 4.7474 24 1 4.7451 -6.5595 4.7627 25 6 4.8217 -1.8728 1.6613 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5878 1.3735 -2.1297 32 1 0.8060 2.7270 -1.2540 33 1 3.0279 3.2173 -2.7005 34 1 2.8758 3.9491 -1.0707 35 1 4.9762 2.7737 -0.8905 36 1 4.3880 1.4049 -1.8856 37 1 3.1871 0.7596 2.6908 38 1 4.9440 0.7251 3.0278 39 1 2.8444 -1.4188 3.6665 40 1 4.1124 -0.7417 4.7421 41 1 6.2656 -1.9073 4.6523 42 1 4.4966 -3.2346 6.7525 43 1 5.8203 -1.9732 1.2361 44 1 4.1491 -2.6018 1.2092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = -125.554273 kcal Electronic energy + Delta-G solvation = -23732.156120 eV Core-core repulsion = 20454.470379 eV Total energy + Delta-G solvation = -3277.685740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65677 -39.58626 -38.08876 -36.11448 -34.22125 -34.06079 -31.76995 -30.49296 -29.62903 -28.48380 -26.93805 -24.23491 -23.74752 -22.19080 -21.40830 -21.22095 -19.49837 -19.11247 -18.01127 -16.99563 -16.90143 -16.85042 -16.37665 -16.02545 -15.47084 -15.24322 -14.88031 -14.80883 -14.20000 -13.99695 -13.88645 -13.45549 -13.31110 -13.26934 -13.13575 -12.92968 -12.69143 -12.51522 -12.40584 -12.29805 -12.18721 -11.98708 -11.86531 -11.78245 -11.49504 -11.45644 -11.34053 -11.25568 -10.75747 -10.59776 -10.15859 -9.59753 -8.25949 -6.40771 1.41282 1.43142 1.50140 1.65003 2.05961 2.38731 2.99190 3.41873 3.63424 3.64181 3.81696 3.99159 4.01400 4.20705 4.27239 4.35456 4.40766 4.43626 4.50903 4.56688 4.60337 4.65435 4.69328 4.79069 4.80128 4.87934 4.90685 5.05699 5.15165 5.15443 5.16303 5.23025 5.27449 5.28269 5.38084 5.44666 5.48143 5.52185 5.55631 5.74787 6.06293 6.59392 6.67078 7.19053 7.29586 7.38969 8.79698 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.004814 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.692698 B = 5814.648052 C = 6250.857027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C -0.071 4.071 4 H 0.102 0.898 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.106 4.106 9 H 0.107 0.893 10 C 0.531 3.469 11 O -0.593 6.593 12 N -0.612 5.612 13 C 0.105 3.895 14 C -0.122 4.122 15 C 0.236 3.764 16 O -0.593 6.593 17 C -0.566 4.566 18 H 0.048 0.952 19 C 0.041 3.959 20 N -0.904 5.904 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.279 1.279 25 C 0.130 3.870 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.380 0.620 42 H 0.273 0.727 43 H 0.038 0.962 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 13.617 -6.867 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C -0.090 4.090 4 H 0.121 0.879 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.127 4.127 9 H 0.125 0.875 10 C 0.323 3.677 11 O -0.475 6.475 12 N -0.344 5.344 13 C -0.017 4.017 14 C -0.161 4.161 15 C 0.197 3.803 16 O -0.402 6.402 17 C -0.604 4.604 18 H 0.066 0.934 19 C -0.161 4.161 20 N -0.542 5.542 21 Si 0.782 3.218 22 H -0.200 1.200 23 H -0.199 1.199 24 H -0.204 1.204 25 C 0.007 3.993 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.244 13.449 -7.890 17.193 hybrid contribution 0.105 -1.815 1.024 2.087 sum -7.138 11.633 -6.866 15.278 Atomic orbital electron populations 1.21701 0.93716 1.01557 1.02841 1.21788 0.97834 0.96707 1.00530 1.21767 0.90925 0.95818 1.00473 0.87944 1.22445 0.99106 0.98399 0.95148 1.22465 0.92763 0.98019 1.01756 1.22383 0.99341 0.98545 0.95063 1.22171 0.97879 0.90446 1.02182 0.87459 1.20917 0.76127 0.89826 0.80868 1.90606 1.54999 1.65966 1.35891 1.48763 1.63885 1.15091 1.06695 1.22493 1.01513 0.96084 0.81612 1.23036 0.99543 0.94878 0.98596 1.19561 0.80723 0.92789 0.87267 1.86108 1.32818 1.93255 1.28055 1.21687 1.47807 0.98133 0.92814 0.93381 1.25542 0.93772 1.00887 0.95885 1.69733 1.48425 1.35515 1.00558 0.85641 0.78706 0.80153 0.77291 1.19999 1.19926 1.20419 1.21718 0.96898 0.83631 0.97051 0.93723 0.91471 0.91188 0.94090 0.93951 0.92716 0.89022 0.90506 0.89237 0.90378 0.92623 0.88489 0.91100 0.92614 0.90174 0.76982 0.91793 0.94378 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.77 71.98 0.70 -2.39 16 2 C -0.13 -3.67 4.12 30.60 0.13 -3.55 16 3 C -0.07 -1.58 2.93 -10.07 -0.03 -1.61 16 4 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.11 -2.06 5.55 31.67 0.18 -1.89 16 6 C -0.11 -1.88 6.91 31.89 0.22 -1.66 16 7 C -0.12 -2.73 6.31 31.67 0.20 -2.53 16 8 C -0.11 -2.78 2.70 -10.82 -0.03 -2.81 16 9 H 0.11 2.41 7.07 -2.38 -0.02 2.39 16 10 C 0.53 19.83 4.69 87.66 0.41 20.24 16 11 O -0.59 -26.59 15.34 -3.04 -0.05 -26.64 16 12 N -0.61 -24.26 2.81 -811.79 -2.28 -26.54 16 13 C 0.10 3.62 6.26 86.85 0.54 4.17 16 14 C -0.12 -5.18 5.47 31.98 0.17 -5.01 16 15 C 0.24 11.63 0.85 -10.35 -0.01 11.62 16 16 O -0.59 -30.30 13.09 -148.98 -1.95 -32.25 16 17 C -0.57 -30.35 8.21 25.60 0.21 -30.14 16 18 H 0.05 2.64 7.57 -2.91 -0.02 2.62 16 19 C 0.04 2.10 5.26 84.65 0.45 2.54 16 20 N -0.90 -45.74 10.65 21.45 0.23 -45.51 16 21 Si 0.96 41.42 29.54 68.60 2.03 43.44 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.13 6.17 6.22 86.73 0.54 6.71 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.28 7.52 -2.39 -0.02 1.26 16 29 H 0.04 1.38 7.09 -2.39 -0.02 1.36 16 30 H 0.04 1.41 6.82 -2.39 -0.02 1.40 16 31 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.66 6.90 -2.39 -0.02 1.64 16 37 H 0.10 2.65 7.50 -2.39 -0.02 2.64 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.46 8.04 -2.38 -0.02 2.44 16 40 H 0.08 3.52 7.54 -2.39 -0.02 3.50 16 41 H 0.38 19.30 7.42 -74.06 -0.55 18.75 16 42 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 43 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 44 H 0.05 2.65 7.66 -2.38 -0.02 2.63 16 Total: -1.00 -61.62 338.41 2.09 -59.53 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.43 Total: 34.26 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 3.68 Total: -6.29 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.05 Total: -72.06 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -2.00 Total: -58.89 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -61.62 2.09 -59.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.022 kcal (2) G-P(sol) polarization free energy of solvation -61.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds