Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47393 * 2 1 4 4 C 1.53001 * 109.47278 * 120.00559 * 2 1 3 5 5 C 1.53002 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46785 * 299.99242 * 5 4 2 7 7 H 1.09004 * 109.47163 * 300.00526 * 6 5 4 8 8 C 1.50698 * 109.47093 * 180.02562 * 6 5 4 9 9 O 1.21280 * 119.99915 * 325.97558 * 8 6 5 10 10 N 1.34781 * 119.99932 * 145.97313 * 8 6 5 11 11 C 1.47018 * 125.64704 * 5.02459 * 10 8 6 12 12 C 1.54323 * 107.26872 * 181.02188 * 11 10 8 13 13 C 1.55156 * 102.94374 * 22.19108 * 12 11 10 14 14 O 1.42894 * 111.00679 * 82.57368 * 13 12 11 15 15 C 1.50706 * 111.00208 * 206.38794 * 13 12 11 16 16 H 1.08005 * 119.99644 * 118.54714 * 15 13 12 17 17 C 1.37873 * 119.99885 * 298.54213 * 15 13 12 18 18 N 1.31510 * 120.00051 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99882 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47403 * 59.99976 * 19 17 15 21 21 H 1.48502 * 109.47103 * 180.02562 * 19 17 15 22 22 H 1.48511 * 109.47010 * 300.00058 * 19 17 15 23 23 C 1.47425 * 125.64627 * 184.71226 * 10 8 6 24 24 C 1.53001 * 109.46747 * 60.00620 * 6 5 4 25 25 C 1.52998 * 109.47278 * 299.99454 * 24 6 5 26 26 H 1.09009 * 109.46918 * 299.99873 * 1 2 3 27 27 H 1.08997 * 109.47102 * 59.99253 * 1 2 3 28 28 H 1.08991 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47634 * 59.99517 * 4 2 1 30 30 H 1.09008 * 109.46446 * 299.99230 * 4 2 1 31 31 H 1.08996 * 109.47679 * 59.99702 * 5 4 2 32 32 H 1.09004 * 109.46935 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.88065 * 300.43411 * 11 10 8 34 34 H 1.08991 * 109.88809 * 61.60338 * 11 10 8 35 35 H 1.09004 * 110.72099 * 140.55275 * 12 11 10 36 36 H 1.08999 * 110.72244 * 263.64842 * 12 11 10 37 37 H 0.96698 * 114.00337 * 61.45529 * 14 13 12 38 38 H 0.97001 * 119.99970 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.36754 * 274.74758 * 23 10 8 40 40 H 1.09001 * 110.36576 * 37.07032 * 23 10 8 41 41 H 1.09008 * 109.46446 * 180.02562 * 24 6 5 42 42 H 1.08991 * 109.47634 * 59.99937 * 24 6 5 43 43 H 1.09004 * 109.47393 * 300.00559 * 25 24 6 44 44 H 1.08997 * 109.47548 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2494 6 6 4.0805 -1.4417 0.0001 7 1 3.7174 -2.4695 -0.0001 8 6 5.5874 -1.4417 0.0006 9 8 6.1937 -0.4976 0.4611 10 7 6.2615 -2.4909 -0.5106 11 6 5.6594 -3.6469 -1.1908 12 6 6.8094 -4.6003 -1.5786 13 6 7.9404 -4.1986 -0.5953 14 8 7.7677 -4.8361 0.6719 15 6 9.2960 -4.5121 -1.1742 16 1 10.0049 -3.7166 -1.3506 17 6 9.6312 -5.8144 -1.4784 18 7 8.7678 -6.7830 -1.2639 19 14 11.3118 -6.2031 -2.1954 20 1 12.3675 -5.7740 -1.2432 21 1 11.4228 -7.6649 -2.4325 22 1 11.4810 -5.4793 -3.4811 23 6 7.7251 -2.6663 -0.4861 24 6 3.5704 -0.7203 -1.2490 25 6 2.0404 -0.7208 -1.2493 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 -1.7489 1.2492 30 1 1.6767 -0.2074 2.1392 31 1 3.9331 0.3070 1.2497 32 1 3.9334 -1.2343 2.1396 33 1 4.9683 -4.1544 -0.5177 34 1 5.1331 -3.3174 -2.0865 35 1 6.5169 -5.6392 -1.4263 36 1 7.1158 -4.4348 -2.6114 37 1 7.7968 -5.8019 0.6336 38 1 9.0036 -7.6991 -1.4784 39 1 8.1826 -2.1553 -1.3333 40 1 8.1364 -2.2916 0.4512 41 1 3.9337 -1.2343 -2.1391 42 1 3.9334 0.3074 -1.2489 43 1 1.6774 -1.7487 -1.2495 44 1 1.6770 -0.2074 -2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593749453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -118.228768 kcal Electronic energy + Delta-G solvation = -23159.330075 eV Core-core repulsion = 19881.961993 eV Total energy + Delta-G solvation = -3277.368083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00546 -38.27246 -36.97211 -34.27155 -32.71792 -32.23525 -30.83695 -29.73949 -28.39121 -26.90549 -24.99454 -22.72766 -22.65064 -21.45037 -20.01743 -19.56552 -18.58950 -17.18923 -16.66283 -15.60047 -15.12867 -14.95559 -14.48004 -14.35529 -14.32427 -14.22342 -13.77543 -13.30879 -12.93468 -12.67470 -12.48787 -12.25736 -12.19027 -11.92377 -11.76242 -11.44541 -11.34701 -11.30749 -11.14849 -10.97170 -10.84388 -10.72261 -10.62385 -10.50429 -10.36665 -10.06249 -10.02386 -9.41520 -9.14331 -8.68525 -8.23452 -7.95467 -6.29440 -4.37475 3.10922 3.21135 3.25908 3.29306 3.59612 4.26054 4.59485 4.61527 4.65321 4.95940 5.03183 5.09101 5.15460 5.35946 5.41825 5.46483 5.47841 5.53826 5.56579 5.68223 5.70065 5.78088 5.81974 5.86554 5.95771 6.01445 6.04400 6.13474 6.16008 6.18580 6.29820 6.33927 6.44063 6.45300 6.66779 6.89767 6.98641 7.28864 7.33373 7.72136 8.01440 8.18771 8.64207 8.70799 9.29565 9.38390 10.77912 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038952 B = 0.003739 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.669720 B = 7485.889379 C = 7637.185721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.100 4.100 7 H 0.087 0.913 8 C 0.527 3.473 9 O -0.557 6.557 10 N -0.607 5.607 11 C 0.100 3.900 12 C -0.136 4.136 13 C 0.248 3.752 14 O -0.582 6.582 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.120 3.880 24 C -0.106 4.106 25 C -0.110 4.110 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.380 0.620 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 7.148 -0.489 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.122 4.122 7 H 0.105 0.895 8 C 0.315 3.685 9 O -0.436 6.436 10 N -0.339 5.339 11 C -0.023 4.023 12 C -0.175 4.175 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.002 4.002 24 C -0.144 4.144 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.506 8.123 -0.035 16.625 hybrid contribution 0.945 -1.066 -0.710 1.592 sum -13.561 7.057 -0.745 15.305 Atomic orbital electron populations 1.21829 0.95419 1.01716 1.01428 1.21173 0.95154 0.99861 0.95125 0.91151 1.21599 0.95258 1.00671 0.97427 1.21382 0.94801 1.01581 0.96230 1.21267 0.91900 1.01575 0.97433 0.89502 1.20225 0.89443 0.81350 0.77478 1.90635 1.70534 1.34534 1.47933 1.48663 1.08890 1.20223 1.56111 1.22179 0.97705 0.87276 0.95165 1.23175 0.94757 0.98621 1.00918 1.19637 0.92310 0.86156 0.81117 1.86138 1.95809 1.24894 1.32227 1.21415 0.99909 0.93551 1.42541 0.91801 1.24980 0.97547 0.96032 0.94385 1.69706 1.35014 1.00524 1.48214 0.86479 0.83737 0.77168 0.79608 1.19997 1.21128 1.20053 1.22399 0.78613 0.97890 1.01293 1.21434 0.95637 1.01010 0.96320 1.21579 0.94856 1.00847 0.97520 0.92840 0.92855 0.92725 0.91922 0.91839 0.90801 0.91746 0.92472 0.92932 0.89555 0.91397 0.77020 0.92188 0.91162 0.91332 0.91575 0.91300 0.91764 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.88 2.72 -90.62 -0.25 -1.13 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 5 C -0.10 -1.34 4.85 -26.73 -0.13 -1.47 16 6 C -0.10 -1.44 2.14 -91.77 -0.20 -1.63 16 7 H 0.09 1.18 6.94 -51.93 -0.36 0.82 16 8 C 0.53 10.09 6.85 -10.98 -0.08 10.01 16 9 O -0.56 -12.45 16.55 5.56 0.09 -12.36 16 10 N -0.61 -12.17 3.32 -170.39 -0.57 -12.74 16 11 C 0.10 1.80 6.21 -3.07 -0.02 1.78 16 12 C -0.14 -2.90 5.37 -24.90 -0.13 -3.03 16 13 C 0.25 5.97 0.87 -89.50 -0.08 5.90 16 14 O -0.58 -14.76 13.17 -35.23 -0.46 -15.22 16 15 C -0.54 -13.93 8.27 -34.44 -0.28 -14.22 16 16 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 17 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 18 N -0.90 -22.80 10.76 55.43 0.60 -22.21 16 19 Si 0.90 20.11 29.54 -169.99 -5.02 15.08 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.12 2.72 6.08 -2.41 -0.01 2.70 16 24 C -0.11 -1.30 5.19 -26.73 -0.14 -1.44 16 25 C -0.11 -1.07 5.21 -26.73 -0.14 -1.21 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 36 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 37 H 0.38 9.55 7.57 45.56 0.34 9.90 16 38 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 39 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 40 H 0.07 1.66 8.08 -51.93 -0.42 1.24 16 41 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -28.10 343.59 -8.62 -36.72 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.08 Total: 9.58 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.35 Total: -4.04 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.03 Total: -34.94 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.37 Total: -27.58 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.10 -8.62 -36.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593749453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.510 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds