Wall clock time and date at job start Tue Mar 31 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47388 * 2 1 4 4 C 1.53003 * 109.47474 * 239.99834 * 2 1 3 5 5 O 1.42905 * 109.46929 * 119.99780 * 2 1 3 6 6 C 1.42899 * 114.00031 * 60.00221 * 5 2 1 7 7 H 1.09003 * 115.54602 * 4.32920 * 6 5 2 8 8 C 1.53076 * 117.49127 * 218.60307 * 6 5 2 9 9 C 1.53001 * 117.49846 * 150.00101 * 6 5 2 10 10 H 1.09000 * 117.49741 * 359.97438 * 9 6 5 11 11 C 1.50698 * 117.49507 * 214.97723 * 9 6 5 12 12 O 1.21280 * 120.00274 * 0.09031 * 11 9 6 13 13 N 1.34774 * 119.99823 * 179.81266 * 11 9 6 14 14 C 1.46501 * 120.00255 * 180.27935 * 13 11 9 15 15 C 1.53001 * 109.47314 * 181.04312 * 14 13 11 16 16 C 1.50696 * 115.55054 * 39.67906 * 15 14 13 17 17 H 1.08002 * 120.00128 * 264.54050 * 16 15 14 18 18 C 1.37876 * 120.00190 * 84.52954 * 16 15 14 19 19 N 1.31516 * 120.00210 * 352.91888 * 18 16 15 20 20 Si 1.86808 * 119.99986 * 172.91631 * 18 16 15 21 21 H 1.48503 * 109.46809 * 60.00671 * 20 18 16 22 22 H 1.48501 * 109.46803 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47348 * 300.00564 * 20 18 16 24 24 C 1.53000 * 117.49850 * 253.96628 * 15 14 13 25 25 C 1.53001 * 117.49775 * 185.34447 * 15 14 13 26 26 H 1.08999 * 109.47158 * 300.00388 * 1 2 3 27 27 H 1.08998 * 109.46515 * 60.00170 * 1 2 3 28 28 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47265 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46684 * 299.99933 * 3 2 1 31 31 H 1.09005 * 109.46963 * 59.99460 * 3 2 1 32 32 H 1.09004 * 109.46632 * 300.00396 * 4 2 1 33 33 H 1.08996 * 109.46913 * 60.00034 * 4 2 1 34 34 H 1.09002 * 109.47004 * 180.02562 * 4 2 1 35 35 H 1.09003 * 117.51032 * 145.03621 * 8 6 5 36 36 H 1.08995 * 117.49629 * 359.97438 * 8 6 5 37 37 H 0.97007 * 119.99914 * 0.27119 * 13 11 9 38 38 H 1.09006 * 109.46771 * 301.03799 * 14 13 11 39 39 H 1.08996 * 109.47390 * 61.04088 * 14 13 11 40 40 H 0.97004 * 120.00389 * 185.02465 * 19 18 16 41 41 H 1.08997 * 117.50103 * 0.02562 * 24 15 14 42 42 H 1.08997 * 117.49273 * 145.01782 * 24 15 14 43 43 H 1.09002 * 117.49841 * 214.97612 * 25 15 14 44 44 H 1.09000 * 117.49851 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.5847 -2.0355 1.2646 7 1 1.0200 -2.4150 0.4130 8 6 1.2110 -2.5616 2.6527 9 6 2.5135 -3.0124 1.9884 10 1 3.4464 -2.6163 2.3896 11 6 2.5772 -4.4258 1.4697 12 8 1.9083 -4.7510 0.5116 13 7 3.3816 -5.3272 2.0670 14 6 3.4482 -6.6997 1.5590 15 6 4.4080 -7.5181 2.4250 16 6 4.3384 -7.2478 3.9059 17 1 5.0245 -6.5482 4.3600 18 6 3.3986 -7.8935 4.6811 19 7 2.4749 -8.6368 4.1119 20 14 3.4374 -7.7127 6.5400 21 1 3.2782 -6.2811 6.9014 22 1 2.3294 -8.5006 7.1372 23 1 4.7357 -8.2128 7.0591 24 6 5.7763 -7.8611 1.8325 25 6 4.7125 -8.9505 1.9819 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 0.4001 -3.2875 2.7145 36 1 1.2873 -1.8689 3.4907 37 1 3.9167 -5.0672 2.8332 38 1 2.4554 -7.1484 1.5935 39 1 3.8067 -6.6893 0.5297 40 1 1.7708 -9.0318 4.6496 41 1 5.9929 -7.5033 0.8260 42 1 6.6265 -7.8910 2.5140 43 1 4.8630 -9.6973 2.7616 44 1 4.2287 -9.3100 1.0737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:14 Heat of formation + Delta-G solvation = -44.691617 kcal Electronic energy + Delta-G solvation = -22400.703499 eV Core-core repulsion = 19126.524227 eV Total energy + Delta-G solvation = -3274.179273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75311 -38.61564 -36.78444 -35.46536 -33.17388 -32.54367 -32.03068 -27.67113 -27.48049 -26.73809 -25.43052 -23.03026 -22.23447 -21.16522 -19.97748 -19.62922 -19.07138 -17.25204 -16.39439 -15.85705 -15.63172 -14.98875 -14.76364 -14.68711 -14.33858 -13.95568 -13.67220 -13.21707 -12.97191 -12.78093 -12.54990 -12.42503 -12.10849 -12.04833 -11.90173 -11.86814 -11.85986 -11.62783 -11.03142 -10.95357 -10.92912 -10.67857 -10.56716 -10.26535 -10.24207 -9.67334 -9.36721 -9.07112 -8.91936 -8.53763 -8.33686 -7.93058 -6.11894 -4.21544 3.04368 3.24148 3.29450 3.30711 3.32315 3.97490 4.23698 4.32566 4.66175 4.70724 4.86260 4.94961 5.07871 5.15349 5.23274 5.28721 5.34978 5.39967 5.42466 5.56216 5.60941 5.68232 5.69312 5.82169 5.89492 5.94809 6.03638 6.10977 6.15882 6.17781 6.30218 6.48531 6.55254 6.71214 6.91017 7.07864 7.26907 7.28920 7.38371 7.49476 7.76706 8.30803 8.43623 8.80257 8.98634 9.46082 10.95733 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.003863 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.069836 B = 7247.241609 C = 7908.295682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.345 6.345 6 C 0.049 3.951 7 H 0.125 0.875 8 C -0.157 4.157 9 C -0.186 4.186 10 H 0.125 0.875 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.687 5.687 14 C 0.164 3.836 15 C 0.029 3.971 16 C -0.506 4.506 17 H 0.061 0.939 18 C 0.078 3.922 19 N -0.870 5.870 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.406 0.594 38 H 0.067 0.933 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 15.578 -6.128 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.069 3.931 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.264 6.264 6 C -0.010 4.010 7 H 0.142 0.858 8 C -0.195 4.195 9 C -0.208 4.208 10 H 0.143 0.857 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.335 5.335 14 C 0.041 3.959 15 C 0.028 3.972 16 C -0.544 4.544 17 H 0.079 0.921 18 C -0.127 4.127 19 N -0.505 5.505 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.242 0.758 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.394 15.225 -6.616 16.772 hybrid contribution 0.144 -0.135 1.338 1.352 sum -2.250 15.089 -5.278 16.143 Atomic orbital electron populations 1.22467 0.95466 1.02961 1.02568 1.21542 0.93313 0.92878 0.85414 1.21761 1.02002 0.93282 1.02372 1.22484 1.02347 1.01501 0.97390 1.87879 1.73539 1.22068 1.42901 1.22553 0.99803 0.81928 0.96666 0.85754 1.23413 0.96796 1.02497 0.96764 1.22688 0.97791 0.93957 1.06353 0.85749 1.19456 0.79912 0.85645 0.83165 1.90618 1.45042 1.80613 1.28509 1.45891 1.43425 1.10959 1.33227 1.20875 1.00739 0.80265 0.94056 1.19021 0.90376 0.93614 0.94198 1.20262 1.18341 1.26061 0.89731 0.92124 1.24980 0.95244 0.94173 0.98295 1.69970 1.12780 1.31980 1.35804 0.86711 0.77707 0.78283 0.85621 1.20106 1.21277 1.20152 1.23086 0.94651 1.07326 0.99748 1.22497 1.02132 0.93632 1.00754 0.91736 0.91653 0.91826 0.91778 0.91124 0.91850 0.91490 0.91682 0.91694 0.87623 0.87543 0.75762 0.91455 0.94570 0.92751 0.91603 0.90376 0.89913 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.38 37.16 0.31 -1.37 16 2 C 0.11 1.15 1.11 -90.62 -0.10 1.05 16 3 C -0.14 -1.18 8.84 37.16 0.33 -0.85 16 4 C -0.18 -1.91 8.38 37.16 0.31 -1.60 16 5 O -0.35 -4.63 10.24 -35.23 -0.36 -4.99 16 6 C 0.05 0.70 4.48 -26.69 -0.12 0.58 16 7 H 0.13 1.86 5.15 -51.93 -0.27 1.59 16 8 C -0.16 -2.21 10.19 -26.69 -0.27 -2.48 16 9 C -0.19 -2.95 6.13 -91.77 -0.56 -3.51 16 10 H 0.12 1.80 8.14 -51.93 -0.42 1.37 16 11 C 0.53 10.54 7.61 -10.99 -0.08 10.45 16 12 O -0.57 -12.80 16.26 5.56 0.09 -12.71 16 13 N -0.69 -14.18 5.33 -60.29 -0.32 -14.50 16 14 C 0.16 3.76 5.75 -4.04 -0.02 3.73 16 15 C 0.03 0.67 1.71 -155.66 -0.27 0.41 16 16 C -0.51 -12.76 7.43 -34.44 -0.26 -13.02 16 17 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 18 C 0.08 2.03 5.39 -17.82 -0.10 1.94 16 19 N -0.87 -23.82 12.97 55.43 0.72 -23.10 16 20 Si 0.89 20.18 29.55 -169.99 -5.02 15.16 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.21 -4.43 9.88 -26.73 -0.26 -4.70 16 25 C -0.15 -3.47 9.51 -26.73 -0.25 -3.73 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.65 6.71 -51.93 -0.35 0.30 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.81 6.53 -51.93 -0.34 0.48 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.41 8.00 7.45 -40.82 -0.30 7.70 16 38 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.04 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 41 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -28.78 362.47 -8.34 -37.12 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.56 Total: 10.67 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.35 Total: -13.10 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.40 Total: -37.60 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.27 Total: -17.70 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.78 -8.34 -37.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.575 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds