Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00398 * 2 1 4 4 N 1.46505 * 109.46936 * 125.00100 * 3 2 1 5 5 C 1.46499 * 119.99592 * 90.00563 * 4 3 2 6 6 C 1.50701 * 109.47260 * 90.00114 * 5 4 3 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27562 * 6 5 4 9 9 N 1.31523 * 119.99908 * 179.72112 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 359.71709 * 8 6 5 11 11 H 1.48500 * 109.47210 * 90.00069 * 10 8 6 12 12 H 1.48504 * 109.47424 * 210.00300 * 10 8 6 13 13 H 1.48502 * 109.46888 * 330.00390 * 10 8 6 14 14 C 1.34771 * 119.99877 * 269.99919 * 4 3 2 15 15 O 1.21279 * 120.00037 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00343 * 0.02562 * 14 4 3 17 17 H 1.09002 * 115.54934 * 34.41283 * 16 14 4 18 18 C 1.52998 * 117.49760 * 248.74547 * 16 14 4 19 19 C 1.52994 * 117.50025 * 180.08664 * 16 14 4 20 20 H 1.09007 * 117.49978 * 359.97438 * 19 16 14 21 21 O 1.42907 * 117.49789 * 214.98172 * 19 16 14 22 22 C 1.42899 * 113.99979 * 150.00102 * 21 19 16 23 23 C 1.53001 * 109.47596 * 59.99731 * 22 21 19 24 24 C 1.53003 * 109.47127 * 179.97438 * 22 21 19 25 25 C 1.53005 * 109.46849 * 299.99550 * 22 21 19 26 26 H 1.07997 * 120.00419 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99708 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99708 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46843 * 5.00452 * 3 2 1 30 30 H 1.08998 * 109.47394 * 245.00117 * 3 2 1 31 31 H 1.09000 * 109.47197 * 329.99120 * 5 4 3 32 32 H 1.09007 * 109.46342 * 209.99692 * 5 4 3 33 33 H 0.96995 * 120.00181 * 179.97438 * 9 8 6 34 34 H 1.09002 * 117.49784 * 359.97438 * 18 16 14 35 35 H 1.09007 * 117.49823 * 145.01721 * 18 16 14 36 36 H 1.08994 * 109.47053 * 59.99825 * 23 22 21 37 37 H 1.08994 * 109.47378 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.46851 * 300.00122 * 23 22 21 39 39 H 1.08997 * 109.47326 * 59.99158 * 24 22 21 40 40 H 1.08992 * 109.47084 * 180.02562 * 24 22 21 41 41 H 1.09004 * 109.46789 * 299.99625 * 24 22 21 42 42 H 1.08991 * 109.47238 * 60.00134 * 25 22 21 43 43 H 1.08996 * 109.46579 * 180.02562 * 25 22 21 44 44 H 1.08997 * 109.46761 * 300.00326 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1315 5 6 4.3590 0.8255 0.9693 6 6 5.2617 1.9478 0.5259 7 1 4.8586 2.9390 0.3791 8 6 6.6007 1.7078 0.3016 9 7 7.3874 2.6861 -0.0906 10 14 7.2976 -0.0067 0.5550 11 1 7.2028 -0.7721 -0.7140 12 1 8.7207 0.0934 0.9676 13 1 6.5234 -0.7043 1.6129 14 6 2.5938 1.8221 2.3213 15 8 3.3637 1.8438 3.2581 16 6 1.1893 2.3425 2.4882 17 1 0.4229 1.8187 1.9168 18 6 1.0135 3.8488 2.6910 19 6 0.7967 2.8879 3.8627 20 1 1.5541 2.8700 4.6464 21 8 -0.5469 2.6721 4.2989 22 6 -0.6873 2.5637 5.7169 23 6 -0.1999 3.8546 6.3779 24 6 -2.1590 2.3358 6.0678 25 6 0.1467 1.3850 6.2233 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4026 -0.9314 31 1 4.3666 0.0349 0.2190 32 1 4.7141 0.4275 1.9200 33 1 8.3295 2.5174 -0.2481 34 1 1.9137 4.4633 2.7041 35 1 0.1312 4.3159 2.2534 36 1 -0.7939 4.6942 6.0171 37 1 -0.3065 3.7717 7.4594 38 1 0.8486 4.0173 6.1279 39 1 -2.5067 1.4164 5.5968 40 1 -2.2661 2.2536 7.1493 41 1 -2.7527 3.1758 5.7071 42 1 1.1950 1.5477 5.9733 43 1 0.0392 1.3021 7.3047 44 1 -0.2006 0.4654 5.7523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -34.447009 kcal Electronic energy + Delta-G solvation = -22807.114856 eV Core-core repulsion = 19533.379823 eV Total energy + Delta-G solvation = -3273.735033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84428 -38.70032 -36.00752 -35.40085 -33.24224 -32.50284 -32.07945 -28.40902 -27.62223 -27.44721 -25.79326 -24.09262 -22.25698 -21.50313 -20.00321 -19.89935 -18.30318 -17.26299 -16.88843 -16.10183 -15.87031 -15.06456 -14.90467 -14.73374 -14.27405 -14.00056 -13.61886 -13.39805 -13.10069 -13.05617 -12.50322 -12.46711 -12.39184 -12.13207 -11.97516 -11.92470 -11.85646 -11.80569 -11.40112 -11.22773 -10.89624 -10.89110 -10.66014 -10.53935 -10.23416 -10.09058 -9.57536 -9.34636 -9.21357 -8.89373 -8.59413 -7.75060 -6.08992 -4.07737 2.34882 3.08731 3.26436 3.30648 3.36091 3.39365 3.92414 4.20969 4.39566 4.68951 4.72921 4.88495 4.96657 5.05386 5.08948 5.17617 5.24921 5.28830 5.33554 5.40774 5.43989 5.52087 5.58724 5.63905 5.70417 5.72366 5.82207 5.88885 5.96603 6.00040 6.13365 6.13671 6.16095 6.20967 6.65446 6.71040 6.84381 6.97800 7.29275 7.33490 7.60599 8.24025 8.46544 8.92178 8.98129 9.51347 11.04364 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.004483 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.665682 B = 6244.661869 C = 6858.076396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.135 3.865 4 N -0.584 5.584 5 C 0.216 3.784 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.542 3.458 15 O -0.542 6.542 16 C -0.189 4.189 17 H 0.125 0.875 18 C -0.158 4.158 19 C 0.049 3.951 20 H 0.125 0.875 21 O -0.345 6.345 22 C 0.108 3.892 23 C -0.178 4.178 24 C -0.136 4.136 25 C -0.180 4.180 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.912 -1.748 7.634 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.180 4.180 3 C 0.012 3.988 4 N -0.314 5.314 5 C 0.095 3.905 6 C -0.567 4.567 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.328 3.672 15 O -0.420 6.420 16 C -0.211 4.211 17 H 0.142 0.858 18 C -0.196 4.196 19 C -0.009 4.009 20 H 0.143 0.857 21 O -0.264 6.264 22 C 0.069 3.931 23 C -0.235 4.235 24 C -0.194 4.194 25 C -0.237 4.237 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.429 -1.716 7.952 20.145 hybrid contribution 0.702 -0.923 -0.048 1.161 sum -17.727 -2.640 7.903 19.588 Atomic orbital electron populations 1.23773 0.95689 1.01642 1.02056 1.23529 0.96165 0.99760 0.98529 1.20628 0.92378 0.94327 0.91510 1.47774 1.13553 1.60892 1.09187 1.19689 0.78123 0.95191 0.97488 1.21328 0.93031 0.96667 1.45652 0.90689 1.24846 0.96717 0.96942 0.94446 1.69897 1.05495 1.31771 1.46418 0.86879 0.78929 0.85108 0.79039 1.20071 1.20922 1.18860 1.19351 0.87093 0.77867 0.82843 1.90647 1.55251 1.56269 1.39822 1.22801 0.97219 0.98605 1.02461 0.85759 1.23427 1.03738 0.90886 1.01551 1.22550 0.85582 1.01641 0.91153 0.85732 1.87862 1.24894 1.91874 1.21768 1.21534 0.96258 0.94508 0.80798 1.22468 1.02337 0.97707 1.00981 1.21755 0.93543 1.02716 1.01348 1.22482 1.01177 0.98632 1.01451 0.88670 0.88564 0.87273 0.90493 0.88801 0.95630 0.94107 0.92564 0.87449 0.87635 0.91743 0.91658 0.91760 0.91832 0.91136 0.91870 0.91434 0.91684 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 13.48 29.02 0.39 -1.87 16 2 C -0.16 -2.25 9.68 -36.02 -0.35 -2.60 16 3 C 0.14 2.21 5.49 -5.19 -0.03 2.18 16 4 N -0.58 -12.25 2.44 -176.43 -0.43 -12.68 16 5 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 6 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 10 Si 0.87 21.58 27.46 -169.99 -4.67 16.91 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.26 -6.39 6.55 56.52 0.37 -6.02 16 14 C 0.54 11.37 7.45 -10.99 -0.08 11.29 16 15 O -0.54 -13.44 15.84 5.56 0.09 -13.35 16 16 C -0.19 -3.07 4.74 -91.77 -0.44 -3.50 16 17 H 0.12 1.82 6.09 -51.93 -0.32 1.51 16 18 C -0.16 -2.27 10.19 -26.70 -0.27 -2.54 16 19 C 0.05 0.73 4.48 -26.70 -0.12 0.61 16 20 H 0.13 1.98 5.15 -51.93 -0.27 1.71 16 21 O -0.35 -4.69 10.24 -35.23 -0.36 -5.05 16 22 C 0.11 1.19 1.11 -90.62 -0.10 1.09 16 23 C -0.18 -1.76 8.38 37.16 0.31 -1.45 16 24 C -0.14 -1.19 8.84 37.16 0.33 -0.87 16 25 C -0.18 -2.01 8.38 37.16 0.31 -1.70 16 26 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.10 1.02 7.68 -52.49 -0.40 0.62 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.08 1.11 6.29 -51.93 -0.33 0.78 16 30 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 31 H 0.03 0.59 7.49 -51.93 -0.39 0.20 16 32 H 0.04 1.09 6.49 -51.93 -0.34 0.75 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.88 6.53 -51.93 -0.34 0.54 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -33.15 358.84 -7.08 -40.24 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.39 Total: 3.00 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.51 Total: -7.58 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.34 Total: -39.57 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.27 Total: -18.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.15 -7.08 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.790 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds