Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.35015 * 2 1 4 4 C 1.54942 * 110.30571 * 237.86472 * 2 1 3 5 5 C 1.55450 * 100.98602 * 204.68598 * 4 2 1 6 6 H 1.09004 * 110.83831 * 275.88721 * 5 4 2 7 7 C 1.53007 * 110.92277 * 152.22898 * 5 4 2 8 8 C 1.54378 * 102.18660 * 34.04112 * 5 4 2 9 9 H 1.09004 * 109.83352 * 98.29987 * 8 5 4 10 10 C 1.50702 * 109.83118 * 219.17870 * 8 5 4 11 11 O 1.21286 * 119.99507 * 93.35542 * 10 8 5 12 12 N 1.34766 * 120.00126 * 273.35863 * 10 8 5 13 13 C 1.46930 * 120.63347 * 354.54450 * 12 10 8 14 14 C 1.53191 * 108.77527 * 126.41470 * 13 12 10 15 15 C 1.53035 * 109.31450 * 54.63893 * 14 13 12 16 16 C 1.53046 * 109.53529 * 298.63118 * 15 14 13 17 17 H 1.09002 * 109.49834 * 301.38132 * 16 15 14 18 18 C 1.50700 * 109.49623 * 181.31763 * 16 15 14 19 19 H 1.08002 * 120.00037 * 239.99878 * 18 16 15 20 20 C 1.37878 * 120.00084 * 60.00111 * 18 16 15 21 21 N 1.31518 * 119.99725 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00168 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47017 * 270.00192 * 22 20 18 24 24 H 1.48498 * 109.46924 * 30.00025 * 22 20 18 25 25 H 1.48496 * 109.47127 * 149.99854 * 22 20 18 26 26 C 1.46927 * 120.63137 * 174.56672 * 12 10 8 27 27 O 1.43232 * 107.66395 * 338.74006 * 8 5 4 28 28 H 1.09009 * 109.46919 * 299.30378 * 1 2 3 29 29 H 1.09002 * 109.47701 * 59.30412 * 1 2 3 30 30 H 1.09004 * 109.46837 * 179.30603 * 1 2 3 31 31 H 1.08993 * 111.12990 * 322.55461 * 4 2 1 32 32 H 1.08999 * 111.13116 * 86.67538 * 4 2 1 33 33 H 1.08998 * 109.47012 * 311.98380 * 7 5 4 34 34 H 1.08996 * 109.47435 * 71.99025 * 7 5 4 35 35 H 1.09003 * 109.47175 * 191.99283 * 7 5 4 36 36 H 1.08999 * 109.58495 * 6.62278 * 13 12 10 37 37 H 1.09006 * 109.58520 * 246.20381 * 13 12 10 38 38 H 1.08995 * 109.49472 * 294.68016 * 14 13 12 39 39 H 1.08998 * 109.51866 * 174.60756 * 14 13 12 40 40 H 1.08997 * 109.46310 * 178.61366 * 15 14 13 41 41 H 1.09000 * 109.46267 * 58.65136 * 15 14 13 42 42 H 0.97006 * 119.99560 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58894 * 113.79781 * 26 12 10 44 44 H 1.09004 * 109.58870 * 353.37397 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0677 -0.7729 -1.2305 5 6 3.4709 -1.2045 -0.7193 6 1 4.1992 -0.4068 -0.8660 7 6 3.9287 -2.4943 -1.4033 8 6 3.2113 -1.4419 0.7838 9 1 3.0631 -2.5057 0.9700 10 6 4.3814 -0.9402 1.5903 11 8 4.3708 0.1872 2.0372 12 7 5.4394 -1.7443 1.8147 13 6 5.4173 -3.1486 1.3833 14 6 6.6566 -3.4203 0.5249 15 6 7.9108 -3.0226 1.3064 16 6 7.8624 -1.5265 1.6249 17 1 7.7940 -0.9589 0.6968 18 6 9.1129 -1.1293 2.3663 19 1 9.0418 -0.7074 3.3579 20 6 10.3478 -1.3046 1.7786 21 7 10.4343 -1.8179 0.5708 22 14 11.8978 -0.8117 2.6973 23 1 12.2277 0.6028 2.3881 24 1 11.6758 -0.9603 4.1580 25 1 13.0219 -1.6857 2.2760 26 6 6.6367 -1.2333 2.4959 27 8 2.0287 -0.7169 1.1405 28 1 -0.3633 0.5030 0.8962 29 1 -0.3634 0.5246 -0.8837 30 1 -0.3633 -1.0276 -0.0124 31 1 1.4471 -1.6414 -1.4509 32 1 2.1488 -0.1204 -2.0998 33 1 3.1236 -3.2283 -1.3708 34 1 4.1867 -2.2835 -2.4411 35 1 4.8022 -2.8901 -0.8850 36 1 4.5180 -3.3366 0.7967 37 1 5.4284 -3.7996 2.2576 38 1 6.5989 -2.8350 -0.3928 39 1 6.7030 -4.4808 0.2776 40 1 8.7955 -3.2379 0.7073 41 1 7.9549 -3.5905 2.2358 42 1 11.3032 -1.9415 0.1575 43 1 6.7474 -1.7281 3.4608 44 1 6.5422 -0.1575 2.6434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = -93.093504 kcal Electronic energy + Delta-G solvation = -23644.680827 eV Core-core repulsion = 20368.402691 eV Total energy + Delta-G solvation = -3276.278136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56014 -38.63370 -36.64590 -34.03206 -33.23955 -32.21186 -31.36452 -30.22302 -27.11981 -26.95719 -25.08442 -24.07105 -21.74334 -21.45451 -21.08895 -19.66249 -18.35540 -17.58757 -16.42343 -16.01996 -15.96107 -14.89674 -14.64122 -14.57981 -14.38842 -13.87131 -13.57924 -13.35521 -13.07225 -12.76778 -12.60761 -12.44317 -12.31003 -12.19297 -12.10643 -11.94721 -11.43637 -11.37054 -11.00309 -10.93842 -10.84636 -10.72174 -10.55462 -10.32602 -10.07888 -9.93970 -9.77927 -9.46979 -8.97840 -8.74817 -8.39948 -7.89714 -6.03863 -4.10677 2.91993 3.29217 3.33327 3.36124 3.41349 3.95541 4.27948 4.41281 4.56486 4.62755 4.91758 5.04023 5.12695 5.18531 5.25144 5.30906 5.34926 5.45454 5.46442 5.58727 5.60594 5.66941 5.75475 5.78669 5.89743 5.98966 6.04785 6.12413 6.14820 6.30125 6.38125 6.46513 6.66441 6.78888 6.91454 7.00999 7.15362 7.31135 7.67149 7.89246 8.00245 8.05370 8.36047 8.66111 8.92928 9.54337 11.01627 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.004372 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.442788 B = 6402.839222 C = 6744.924195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.111 4.111 6 H 0.091 0.909 7 C -0.158 4.158 8 C 0.068 3.932 9 H 0.099 0.901 10 C 0.499 3.501 11 O -0.538 6.538 12 N -0.600 5.600 13 C 0.100 3.900 14 C -0.137 4.137 15 C -0.112 4.112 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.514 4.514 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.287 1.287 26 C 0.117 3.883 27 O -0.353 6.353 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.055 0.945 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 -3.834 -5.591 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.091 0.909 4 C -0.183 4.183 5 C -0.131 4.131 6 H 0.109 0.891 7 C -0.215 4.215 8 C 0.007 3.993 9 H 0.117 0.883 10 C 0.286 3.714 11 O -0.415 6.415 12 N -0.333 5.333 13 C -0.023 4.023 14 C -0.175 4.175 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.553 4.553 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.199 1.199 25 H -0.212 1.212 26 C -0.004 4.004 27 O -0.272 6.272 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.923 -3.274 -5.268 17.089 hybrid contribution 1.104 0.162 0.252 1.144 sum -14.819 -3.111 -5.016 15.951 Atomic orbital electron populations 1.21864 0.93599 1.02641 1.02413 1.23005 0.94675 0.96082 0.84664 0.90908 1.23442 0.95436 1.00881 0.98509 1.22620 0.98125 1.00176 0.92134 0.89101 1.22062 1.02460 0.95704 1.01268 1.22784 0.85498 0.96767 0.94251 0.88337 1.20765 0.83792 0.85892 0.80986 1.90656 1.80053 1.19606 1.51218 1.48271 1.16354 1.10862 1.57859 1.21969 0.99304 0.82227 0.98776 1.22068 0.96251 1.00116 0.99044 1.21625 0.96351 0.98404 0.98610 1.18972 0.90681 0.92994 0.95194 0.95323 1.21085 0.90552 1.41415 1.02204 0.92468 1.24928 0.98987 0.94967 0.94879 1.69872 1.24380 1.44584 1.13977 0.86577 0.82721 0.78457 0.80163 1.20669 1.19864 1.21249 1.22012 0.83436 0.99522 0.95405 1.88471 1.39625 1.64741 1.34324 0.91800 0.91252 0.91998 0.90010 0.89708 0.92168 0.91655 0.90249 0.90708 0.91768 0.92039 0.92355 0.88564 0.94517 0.92994 0.92645 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.62 37.16 0.36 -1.02 16 2 C 0.07 0.89 4.08 -25.70 -0.10 0.79 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.15 -1.47 6.04 -24.41 -0.15 -1.61 16 5 C -0.11 -1.40 3.12 -88.59 -0.28 -1.68 16 6 H 0.09 1.33 7.84 -51.93 -0.41 0.92 16 7 C -0.16 -1.65 8.64 37.16 0.32 -1.33 16 8 C 0.07 1.02 2.95 -27.16 -0.08 0.94 16 9 H 0.10 1.28 5.96 -51.93 -0.31 0.97 16 10 C 0.50 9.63 6.78 -10.99 -0.07 9.56 16 11 O -0.54 -12.54 16.13 -12.71 -0.20 -12.75 16 12 N -0.60 -11.32 2.97 -172.76 -0.51 -11.84 16 13 C 0.10 1.53 5.68 -3.71 -0.02 1.51 16 14 C -0.14 -2.31 5.38 -26.61 -0.14 -2.46 16 15 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 16 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.51 -13.87 8.56 -34.44 -0.29 -14.17 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -24.64 11.31 55.43 0.63 -24.02 16 22 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.12 2.58 5.64 -3.71 -0.02 2.56 16 27 O -0.35 -5.60 10.37 -53.49 -0.55 -6.16 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.52 7.99 -51.93 -0.42 0.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.93 3.55 -51.93 -0.18 0.75 16 36 H 0.07 0.93 3.55 -51.93 -0.18 0.74 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.07 6.86 -51.93 -0.36 0.71 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.86 7.04 -51.93 -0.37 1.49 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -30.98 332.92 -8.70 -39.68 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.13 Total: 1.12 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.92 Total: -7.07 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.11 Total: -35.85 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.76 Total: -18.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.98 -8.70 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.413 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds