Wall clock time and date at job start Tue Mar 31 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.41854 * 2 1 4 4 C 1.54485 * 110.37052 * 237.69231 * 2 1 3 5 5 C 1.54506 * 104.05743 * 217.19152 * 4 2 1 6 6 H 1.09006 * 110.50820 * 241.35340 * 5 4 2 7 7 C 1.53001 * 110.51594 * 118.64610 * 5 4 2 8 8 C 1.54473 * 104.06789 * 359.97438 * 5 4 2 9 9 H 1.09008 * 110.46568 * 265.10512 * 8 5 4 10 10 C 1.50703 * 110.37604 * 142.81332 * 8 5 4 11 11 O 1.21282 * 119.99680 * 248.16701 * 10 8 5 12 12 N 1.34771 * 119.99806 * 68.16460 * 10 8 5 13 13 C 1.46920 * 120.63646 * 0.02562 * 12 10 8 14 14 C 1.53188 * 108.77632 * 233.61246 * 13 12 10 15 15 C 1.53038 * 109.31321 * 305.35754 * 14 13 12 16 16 C 1.53051 * 109.53502 * 61.36718 * 15 14 13 17 17 H 1.08997 * 109.49198 * 58.61894 * 16 15 14 18 18 C 1.50694 * 109.49748 * 178.68372 * 16 15 14 19 19 H 1.08002 * 120.00179 * 119.93344 * 18 16 15 20 20 C 1.37879 * 120.00472 * 299.93661 * 18 16 15 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47339 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00306 * 22 20 18 25 25 H 1.48504 * 109.46636 * 59.99865 * 22 20 18 26 26 C 1.46936 * 120.59923 * 180.02562 * 12 10 8 27 27 O 1.44423 * 110.37140 * 122.31301 * 2 1 3 28 28 H 1.08993 * 109.47524 * 299.14480 * 1 2 3 29 29 H 1.09003 * 109.47393 * 59.14765 * 1 2 3 30 30 H 1.09002 * 109.47511 * 179.14413 * 1 2 3 31 31 H 1.09002 * 110.50964 * 335.83256 * 4 2 1 32 32 H 1.08999 * 110.51166 * 98.40679 * 4 2 1 33 33 H 1.09001 * 109.46870 * 305.35851 * 7 5 4 34 34 H 1.09005 * 109.46784 * 65.34954 * 7 5 4 35 35 H 1.08991 * 109.47744 * 185.35293 * 7 5 4 36 36 H 1.08999 * 109.59115 * 113.82071 * 13 12 10 37 37 H 1.09004 * 109.69825 * 353.46535 * 13 12 10 38 38 H 1.09007 * 109.50056 * 185.41436 * 14 13 12 39 39 H 1.09000 * 109.53222 * 65.32865 * 14 13 12 40 40 H 1.09000 * 109.46417 * 301.34838 * 15 14 13 41 41 H 1.09002 * 109.46423 * 181.38573 * 15 14 13 42 42 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.61995 * 6.62276 * 26 12 10 44 44 H 1.08999 * 109.56019 * 246.19295 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3177 -1.5057 -0.6859 6 1 4.2109 -1.1773 -1.2175 7 6 3.1462 -3.0211 -0.8084 8 6 3.3877 -1.0867 0.7993 9 1 4.0533 -0.2324 0.9233 10 6 3.8534 -2.2411 1.6488 11 8 3.0897 -2.7638 2.4327 12 7 5.1183 -2.6925 1.5373 13 6 6.0551 -2.0692 0.5925 14 6 6.6433 -3.1585 -0.3097 15 6 7.2636 -4.2550 0.5592 16 6 6.1803 -4.8871 1.4363 17 1 5.3944 -5.2992 0.8033 18 6 6.7856 -5.9884 2.2679 19 1 6.7498 -5.9329 3.3459 20 6 7.3852 -7.0668 1.6528 21 7 7.4284 -7.1346 0.3401 22 14 8.1362 -8.4316 2.6837 23 1 8.7128 -9.4674 1.7894 24 1 9.2069 -7.8692 3.5453 25 1 7.0853 -9.0435 3.5360 26 6 5.5862 -3.8174 2.3586 27 8 2.0327 -0.7237 1.1442 28 1 -0.3634 0.5004 0.8975 29 1 -0.3634 0.5270 -0.8822 30 1 -0.3634 -1.0275 -0.0154 31 1 1.3275 -1.4919 -1.5773 32 1 2.3406 -0.0841 -2.0225 33 1 2.2242 -3.3237 -0.3119 34 1 3.0991 -3.2974 -1.8618 35 1 3.9929 -3.5218 -0.3389 36 1 6.8574 -1.5784 1.1435 37 1 5.5282 -1.3350 -0.0170 38 1 7.4108 -2.7248 -0.9508 39 1 5.8532 -3.5866 -0.9266 40 1 8.0372 -3.8219 1.1933 41 1 7.7046 -5.0194 -0.0806 42 1 7.8507 -7.8931 -0.0927 43 1 4.7482 -4.2384 2.9141 44 1 6.3499 -3.4689 3.0538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:42 Heat of formation + Delta-G solvation = -89.923739 kcal Electronic energy + Delta-G solvation = -23850.150315 eV Core-core repulsion = 20574.009630 eV Total energy + Delta-G solvation = -3276.140685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65625 -38.65688 -36.64308 -33.94735 -33.07799 -32.17286 -31.32168 -30.17963 -27.00296 -26.96269 -25.06860 -24.19883 -21.70984 -21.42642 -21.01821 -19.74747 -18.28867 -17.12771 -16.56190 -16.09505 -16.00149 -15.23537 -14.71169 -14.39036 -14.17414 -13.96786 -13.37170 -13.31765 -12.84060 -12.75377 -12.65090 -12.46144 -12.37448 -12.15969 -12.02324 -11.95395 -11.33852 -11.12112 -10.99349 -10.87045 -10.82671 -10.79520 -10.68969 -10.22863 -9.97754 -9.81997 -9.78555 -9.43353 -9.14897 -8.82996 -8.39197 -7.88714 -6.02924 -4.09793 3.01347 3.18861 3.31332 3.35635 3.39599 4.02705 4.39428 4.42080 4.55542 4.68687 4.86950 4.99504 5.13420 5.21940 5.25002 5.28179 5.35593 5.48780 5.54267 5.61477 5.67125 5.75935 5.77681 5.88061 5.99802 6.02909 6.08728 6.14308 6.28199 6.36991 6.46097 6.50305 6.67535 6.72383 6.83442 6.98189 7.15521 7.31694 7.67822 7.89528 7.99341 8.06038 8.36724 8.66010 8.93511 9.55117 11.02533 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.004428 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.155088 B = 6322.341800 C = 6526.473423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.112 4.112 6 H 0.091 0.909 7 C -0.160 4.160 8 C 0.061 3.939 9 H 0.087 0.913 10 C 0.521 3.479 11 O -0.531 6.531 12 N -0.602 5.602 13 C 0.103 3.897 14 C -0.137 4.137 15 C -0.112 4.112 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.288 1.288 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.118 3.882 27 O -0.341 6.341 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 14.922 -6.287 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.086 0.914 4 C -0.184 4.184 5 C -0.131 4.131 6 H 0.110 0.890 7 C -0.217 4.217 8 C -0.001 4.001 9 H 0.105 0.895 10 C 0.307 3.693 11 O -0.407 6.407 12 N -0.336 5.336 13 C -0.020 4.020 14 C -0.175 4.175 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.554 4.554 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.003 4.003 27 O -0.259 6.259 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.824 14.469 -5.795 17.015 hybrid contribution 0.711 -0.623 0.216 0.970 sum -6.114 13.846 -5.579 16.131 Atomic orbital electron populations 1.21779 0.93076 1.03126 1.02229 1.23031 0.95564 0.95250 0.85388 0.91406 1.23135 0.97531 0.99656 0.98084 1.22513 0.98898 0.97962 0.93705 0.89044 1.22092 1.04010 0.93359 1.02249 1.22945 0.86447 0.96561 0.94127 0.89530 1.19918 0.82087 0.84161 0.83141 1.90685 1.53511 1.58580 1.37943 1.48228 1.10228 1.34537 1.40580 1.21865 0.92668 0.95828 0.91594 1.22058 1.00034 0.97244 0.98129 1.21633 0.98715 0.96130 0.98553 1.18969 0.94132 0.91213 0.93443 0.95229 1.21042 1.37008 1.04355 0.92952 0.92531 1.24920 0.95942 0.97926 0.94920 1.69860 1.44440 1.30578 1.07895 0.86642 0.79524 0.81650 0.80107 1.21326 1.20266 1.20223 1.22028 0.98718 0.85812 0.93717 1.89281 1.25281 1.74112 1.37260 0.91840 0.91245 0.91609 0.90087 0.90412 0.92065 0.92139 0.90122 0.91872 0.91092 0.92477 0.91991 0.94570 0.88610 0.92940 0.90258 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.52 37.16 0.35 -1.03 16 2 C 0.07 0.73 3.92 -25.95 -0.10 0.63 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.48 6.28 -25.16 -0.16 -1.64 16 5 C -0.11 -1.38 2.70 -89.06 -0.24 -1.62 16 6 H 0.09 0.94 6.72 -51.93 -0.35 0.59 16 7 C -0.16 -2.37 8.03 37.16 0.30 -2.08 16 8 C 0.06 0.90 2.67 -27.11 -0.07 0.82 16 9 H 0.09 1.08 7.68 -51.92 -0.40 0.68 16 10 C 0.52 9.88 5.33 -10.99 -0.06 9.82 16 11 O -0.53 -12.37 15.97 -13.65 -0.22 -12.58 16 12 N -0.60 -11.07 2.16 -172.75 -0.37 -11.44 16 13 C 0.10 1.55 5.61 -3.72 -0.02 1.53 16 14 C -0.14 -2.30 5.90 -26.61 -0.16 -2.46 16 15 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 16 C 0.04 1.00 2.25 -91.63 -0.21 0.80 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 22 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 2.55 5.66 -3.69 -0.02 2.53 16 27 O -0.34 -5.43 10.60 -54.43 -0.58 -6.01 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.42 4.20 -51.93 -0.22 1.20 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.85 4.17 -51.93 -0.22 0.63 16 38 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.06 1.08 6.60 -51.93 -0.34 0.74 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 2.37 6.04 -51.93 -0.31 2.06 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -30.83 331.20 -8.68 -39.51 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.20 Total: 1.27 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.91 Total: -7.75 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.25 Total: -35.42 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.80 Total: -18.60 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.83 -8.68 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.411 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds