Wall clock time and date at job start Tue Mar 31 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.89727 * 2 1 4 4 C 1.54387 * 109.82577 * 239.06490 * 2 1 3 5 5 C 1.55301 * 102.24957 * 219.13158 * 4 2 1 6 6 H 1.09010 * 111.12723 * 276.21482 * 5 4 2 7 7 C 1.53003 * 111.12745 * 152.05650 * 5 4 2 8 8 C 1.54944 * 100.94711 * 34.13630 * 5 4 2 9 9 H 1.08996 * 110.31050 * 82.46553 * 8 5 4 10 10 C 1.50698 * 110.39641 * 204.59930 * 8 5 4 11 11 O 1.21285 * 120.00177 * 91.92404 * 10 8 5 12 12 N 1.34771 * 120.00052 * 271.92192 * 10 8 5 13 13 C 1.46934 * 120.62966 * 4.46992 * 12 10 8 14 14 C 1.52750 * 109.01219 * 233.58555 * 13 12 10 15 15 C 1.53049 * 109.38362 * 305.59038 * 14 13 12 16 16 C 1.53037 * 109.53691 * 61.23646 * 15 14 13 17 17 H 1.08996 * 109.52232 * 58.60891 * 16 15 14 18 18 C 1.50701 * 109.49396 * 178.68791 * 16 15 14 19 19 H 1.07994 * 120.00128 * 119.84185 * 18 16 15 20 20 C 1.37880 * 119.99763 * 299.83497 * 18 16 15 21 21 N 1.31523 * 119.99642 * 180.02562 * 20 18 16 22 22 Si 1.86797 * 120.00226 * 0.02562 * 20 18 16 23 23 H 1.48499 * 109.47548 * 89.99585 * 22 20 18 24 24 H 1.48502 * 109.47002 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46975 * 329.99256 * 22 20 18 26 26 C 1.46924 * 120.63540 * 184.75389 * 12 10 8 27 27 O 1.43237 * 109.82649 * 120.93809 * 2 1 3 28 28 H 1.09001 * 109.47490 * 180.92902 * 1 2 3 29 29 H 1.08999 * 109.47077 * 300.93259 * 1 2 3 30 30 H 1.09000 * 109.47466 * 60.93162 * 1 2 3 31 31 H 1.08996 * 110.84825 * 337.32133 * 4 2 1 32 32 H 1.09002 * 110.84169 * 100.94216 * 4 2 1 33 33 H 1.09000 * 109.46772 * 55.12080 * 7 5 4 34 34 H 1.09000 * 109.47453 * 175.12185 * 7 5 4 35 35 H 1.08993 * 109.46805 * 295.12531 * 7 5 4 36 36 H 1.09007 * 109.58321 * 353.42348 * 13 12 10 37 37 H 1.08999 * 109.58390 * 113.84343 * 13 12 10 38 38 H 1.09005 * 109.56951 * 185.55234 * 14 13 12 39 39 H 1.09004 * 109.38961 * 65.51329 * 14 13 12 40 40 H 1.09002 * 109.45665 * 301.21725 * 15 14 13 41 41 H 1.08994 * 109.45888 * 181.25948 * 15 14 13 42 42 H 0.96996 * 119.99499 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.58390 * 246.15578 * 26 12 10 44 44 H 1.08997 * 109.58286 * 6.43429 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0248 0.0000 4 6 2.0536 -0.7466 -1.2458 5 6 3.2729 -1.5223 -0.6768 6 1 4.1620 -0.8922 -0.6507 7 6 3.5314 -2.8035 -1.4722 8 6 2.7747 -1.8446 0.7545 9 1 2.1400 -2.7306 0.7436 10 6 3.9433 -2.0506 1.6834 11 8 4.3891 -1.1153 2.3138 12 7 4.4929 -3.2742 1.8137 13 6 4.0286 -4.3956 0.9855 14 6 3.6472 -5.5617 1.8954 15 6 4.8279 -5.9008 2.8084 16 6 5.1613 -4.6912 3.6845 17 1 4.2872 -4.4174 4.2754 18 6 6.3029 -5.0367 4.6056 19 1 7.2234 -4.4738 4.5592 20 6 6.1721 -6.0713 5.5075 21 7 7.1683 -6.3725 6.3116 22 14 4.5802 -7.0453 5.5872 23 1 4.6577 -8.1981 4.6544 24 1 4.3724 -7.5417 6.9713 25 1 3.4447 -6.1703 5.1996 26 6 5.5636 -3.5138 2.7909 27 8 2.0158 -0.6927 1.1557 28 1 -0.3634 -1.0275 0.0167 29 1 -0.3633 0.5282 0.8815 30 1 -0.3634 0.4993 -0.8982 31 1 1.3011 -1.4349 -1.6303 32 1 2.3671 -0.0425 -2.0166 33 1 3.6485 -2.5583 -2.5278 34 1 4.4408 -3.2806 -1.1069 35 1 2.6891 -3.4840 -1.3485 36 1 3.1586 -4.0861 0.4062 37 1 4.8267 -4.7072 0.3118 38 1 3.3953 -6.4313 1.2883 39 1 2.7869 -5.2805 2.5028 40 1 5.6949 -6.1586 2.2001 41 1 4.5650 -6.7473 3.4427 42 1 7.0765 -7.1007 6.9458 43 1 6.4895 -3.7521 2.2674 44 1 5.7079 -2.6220 3.4008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:45 Heat of formation + Delta-G solvation = -84.743963 kcal Electronic energy + Delta-G solvation = -23625.153727 eV Core-core repulsion = 20349.237655 eV Total energy + Delta-G solvation = -3275.916073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67935 -38.89138 -36.90428 -34.24323 -33.25406 -32.25316 -31.72809 -30.58691 -27.42388 -27.19295 -25.06984 -24.50672 -21.74700 -21.46431 -21.29407 -19.79873 -18.67790 -17.72415 -16.72719 -16.23506 -15.96395 -15.25177 -14.68321 -14.63890 -14.49411 -13.95892 -13.84722 -13.69518 -13.34638 -12.99921 -12.73822 -12.68986 -12.61191 -12.43481 -12.28673 -12.12407 -11.64451 -11.55941 -11.39989 -11.14756 -10.97350 -10.78181 -10.66860 -10.32836 -10.16882 -9.92377 -9.83821 -9.49743 -9.16456 -8.94942 -8.57157 -8.10411 -6.10120 -4.10216 2.72594 3.19165 3.23072 3.36131 3.38094 3.87065 4.11479 4.38143 4.43993 4.46628 4.78428 4.89278 4.90431 5.04195 5.12469 5.17214 5.20768 5.27822 5.32174 5.34429 5.45259 5.49434 5.51491 5.61734 5.75822 5.80933 5.88872 5.93847 5.95836 6.02312 6.04399 6.17695 6.34502 6.51499 6.64911 6.71356 6.81505 6.89923 7.13262 7.45238 7.71804 7.80674 8.45764 8.52745 8.93228 9.51413 11.02908 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.004543 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.826803 B = 6162.161171 C = 6250.121714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.114 4.114 6 H 0.093 0.907 7 C -0.150 4.150 8 C 0.067 3.933 9 H 0.091 0.909 10 C 0.512 3.488 11 O -0.528 6.528 12 N -0.604 5.604 13 C 0.104 3.896 14 C -0.142 4.142 15 C -0.122 4.122 16 C 0.005 3.995 17 H 0.031 0.969 18 C -0.514 4.514 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.888 3.112 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.266 1.266 26 C 0.129 3.871 27 O -0.350 6.350 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 6.300 -19.023 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.099 0.901 4 C -0.182 4.182 5 C -0.133 4.133 6 H 0.111 0.889 7 C -0.207 4.207 8 C 0.006 3.994 9 H 0.108 0.892 10 C 0.298 3.702 11 O -0.404 6.404 12 N -0.338 5.338 13 C -0.019 4.019 14 C -0.181 4.181 15 C -0.159 4.159 16 C -0.015 4.015 17 H 0.049 0.951 18 C -0.553 4.553 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.191 1.191 26 C 0.008 3.992 27 O -0.268 6.268 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.151 6.769 -18.318 23.000 hybrid contribution -0.818 -0.877 -0.021 1.199 sum -12.969 5.892 -18.338 23.221 Atomic orbital electron populations 1.22140 0.94751 1.02641 1.02346 1.22770 0.94328 0.96594 0.84784 0.90081 1.23273 0.97301 0.99608 0.98062 1.22791 0.99315 0.98406 0.92786 0.88890 1.21969 1.02652 0.96016 1.00110 1.22991 0.92264 0.90873 0.93271 0.89201 1.20241 0.84012 0.82941 0.82967 1.90688 1.62570 1.40620 1.46571 1.48267 1.38381 1.08017 1.39142 1.21929 0.99347 0.87367 0.93269 1.21973 1.00202 0.97153 0.98733 1.21982 0.96100 1.00121 0.97723 1.19475 0.98065 0.90612 0.93342 0.95139 1.20902 1.00156 1.16833 1.17375 0.90561 1.24978 0.96121 0.96896 0.94983 1.69896 1.31430 1.30056 1.22257 0.86833 0.84914 0.80423 0.76012 1.20570 1.22477 1.19086 1.21789 0.87440 1.00369 0.89593 1.88553 1.69242 1.39645 1.29406 0.92155 0.91774 0.91505 0.90000 0.89721 0.91656 0.91206 0.91809 0.90268 0.91181 0.91621 0.92066 0.91869 0.93162 0.92586 0.91856 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.44 37.16 0.35 -1.03 16 2 C 0.07 0.78 4.16 -26.00 -0.11 0.67 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.14 -1.19 6.03 -24.78 -0.15 -1.34 16 5 C -0.11 -1.18 3.10 -88.37 -0.27 -1.45 16 6 H 0.09 1.09 8.05 -51.92 -0.42 0.67 16 7 C -0.15 -1.20 7.91 37.16 0.29 -0.91 16 8 C 0.07 0.93 2.78 -26.86 -0.07 0.85 16 9 H 0.09 1.10 6.25 -51.93 -0.32 0.77 16 10 C 0.51 9.31 6.96 -10.99 -0.08 9.23 16 11 O -0.53 -11.87 16.13 -12.43 -0.20 -12.07 16 12 N -0.60 -10.58 2.98 -173.03 -0.52 -11.09 16 13 C 0.10 1.41 4.66 -3.93 -0.02 1.39 16 14 C -0.14 -2.22 6.06 -26.83 -0.16 -2.38 16 15 C -0.12 -2.46 4.66 -26.69 -0.12 -2.58 16 16 C 0.00 0.11 1.84 -91.66 -0.17 -0.06 16 17 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 18 C -0.51 -14.29 9.14 -34.44 -0.31 -14.61 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 21 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 22 Si 0.89 21.81 24.39 -169.99 -4.15 17.66 16 23 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16 24 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 26 C 0.13 2.69 5.65 -3.71 -0.02 2.67 16 27 O -0.35 -5.37 10.37 -53.21 -0.55 -5.92 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.56 7.74 -51.93 -0.40 0.16 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 35 H 0.06 0.44 7.05 -51.93 -0.37 0.07 16 36 H 0.08 0.85 3.35 -51.93 -0.17 0.67 16 37 H 0.07 0.85 7.50 -51.93 -0.39 0.46 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.97 7.03 -51.93 -0.37 1.61 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -33.42 327.49 -7.78 -41.20 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.13 Total: -0.53 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.94 Total: -7.58 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.26 Total: -37.69 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.75 Total: -17.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.42 -7.78 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.540 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds