Wall clock time and date at job start Tue Mar 31 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47186 * 2 1 4 4 H 1.09002 * 110.55028 * 307.87799 * 3 2 1 5 5 C 1.54994 * 110.61660 * 184.99908 * 3 2 1 6 6 C 1.54808 * 102.08943 * 204.47492 * 5 3 2 7 7 C 1.54096 * 104.18838 * 20.88238 * 6 5 3 8 8 H 1.08997 * 109.88115 * 242.44902 * 7 6 5 9 9 C 1.50702 * 109.87912 * 121.45261 * 7 6 5 10 10 O 1.21283 * 120.00262 * 245.00277 * 9 7 6 11 11 N 1.34777 * 119.99928 * 64.72183 * 9 7 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 7 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49533 * 301.37974 * 15 14 13 17 17 C 1.50699 * 109.49909 * 181.31298 * 15 14 13 18 18 H 1.07997 * 120.00195 * 240.00020 * 17 15 14 19 19 C 1.37875 * 119.99513 * 60.00100 * 17 15 14 20 20 N 1.31512 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47422 * 89.99746 * 21 19 17 23 23 H 1.48495 * 109.47581 * 210.00119 * 21 19 17 24 24 H 1.48503 * 109.46891 * 329.99989 * 21 19 17 25 25 C 1.46929 * 120.63092 * 179.97438 * 11 9 7 26 26 O 1.43740 * 107.29510 * 2.03212 * 7 6 5 27 27 H 1.09003 * 109.46914 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46701 * 299.99818 * 1 2 3 30 30 H 1.08999 * 109.46701 * 240.00182 * 2 1 3 31 31 H 1.08996 * 109.47240 * 120.00086 * 2 1 3 32 32 H 1.09007 * 110.90396 * 86.28189 * 5 3 2 33 33 H 1.08996 * 110.91183 * 322.67698 * 5 3 2 34 34 H 1.09005 * 110.48773 * 262.20583 * 6 5 3 35 35 H 1.09000 * 110.60041 * 139.61819 * 6 5 3 36 36 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 37 37 H 1.08997 * 109.58518 * 6.57129 * 12 11 9 38 38 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 39 39 H 1.09004 * 109.49155 * 294.68607 * 13 12 11 40 40 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 41 41 H 1.08996 * 109.45855 * 178.61688 * 14 13 12 42 42 H 0.97000 * 120.00560 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.58730 * 353.42298 * 25 11 9 44 44 H 1.09003 * 109.58586 * 113.84896 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5768 2.0122 -0.8056 5 6 3.5845 1.4754 -0.1264 6 6 3.9333 2.8408 0.5142 7 6 2.7073 3.1729 1.3867 8 1 2.2334 4.0865 1.0277 9 6 3.1318 3.3462 2.8222 10 8 2.7401 2.5706 3.6683 11 7 3.9514 4.3598 3.1649 12 6 4.4343 5.3075 2.1513 13 6 4.1100 6.7316 2.6134 14 6 4.6922 6.9552 4.0109 15 6 4.0546 5.9713 4.9945 16 1 2.9740 6.1141 5.0029 17 6 4.6048 6.2137 6.3764 18 1 5.1303 5.4251 6.8944 19 6 4.4373 7.4423 6.9792 20 7 3.7979 8.4028 6.3481 21 14 5.1199 7.7432 8.6918 22 1 6.5077 8.2612 8.5877 23 1 4.2716 8.7386 9.3951 24 1 5.1232 6.4689 9.4543 25 6 4.3735 4.5421 4.5604 26 8 1.7933 2.0690 1.2772 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8898 1.4471 -1.1725 33 1 4.0380 0.6565 0.4320 34 1 4.0702 3.5998 -0.2562 35 1 4.8288 2.7579 1.1301 36 1 5.5124 5.1983 2.0332 37 1 3.9387 5.1099 1.2009 38 1 4.5473 7.4481 1.9181 39 1 3.0288 6.8667 2.6438 40 1 5.7702 6.7956 3.9849 41 1 4.4841 7.9758 4.3319 42 1 3.6804 9.2673 6.7721 43 1 3.8377 3.8397 5.1990 44 1 5.4465 4.3691 4.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:45 Heat of formation + Delta-G solvation = -97.918132 kcal Electronic energy + Delta-G solvation = -23121.014111 eV Core-core repulsion = 19844.526763 eV Total energy + Delta-G solvation = -3276.487348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41058 -38.68215 -36.63097 -33.88170 -33.49720 -32.23194 -31.27400 -30.38336 -28.58082 -25.20438 -25.03914 -23.58023 -21.94127 -21.62151 -21.12084 -19.91209 -18.44078 -17.07566 -16.62825 -16.21116 -16.13324 -15.14580 -14.69363 -14.28074 -14.08157 -13.91267 -13.71750 -13.52109 -13.25070 -13.04855 -12.86074 -12.67609 -12.13199 -12.07051 -11.81604 -11.77380 -11.58884 -11.12941 -10.98184 -10.92937 -10.87888 -10.78445 -10.70362 -10.30371 -9.99023 -9.95345 -9.79948 -9.44691 -9.08196 -8.80687 -8.39012 -7.90735 -6.02226 -4.09362 2.98403 3.23471 3.29673 3.36754 3.41185 3.93331 4.35007 4.42512 4.50312 4.69180 4.77651 4.93995 5.07741 5.11596 5.16002 5.26531 5.32355 5.45141 5.50879 5.56105 5.60363 5.65882 5.73716 5.78376 5.82555 5.88686 6.01546 6.08356 6.18531 6.31216 6.37925 6.47115 6.64968 6.74653 6.85077 6.99399 7.15897 7.32432 7.68643 7.90563 7.99762 8.07148 8.37073 8.66139 8.94358 9.55584 11.03316 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.003775 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.907496 B = 7416.391044 C = 7773.279033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.062 3.938 8 H 0.091 0.909 9 C 0.509 3.491 10 O -0.531 6.531 11 N -0.602 5.602 12 C 0.107 3.893 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.119 3.881 26 O -0.341 6.341 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -9.735 -17.185 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.001 3.999 8 H 0.108 0.892 9 C 0.295 3.705 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.002 4.002 26 O -0.259 6.259 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.646 -10.043 -16.533 19.355 hybrid contribution 0.552 0.559 0.704 1.055 sum -0.093 -9.485 -15.829 18.454 Atomic orbital electron populations 1.21740 0.95235 1.01546 1.02360 1.21545 0.96808 0.94309 1.02736 1.23262 0.94115 0.94539 0.86678 0.91126 1.23187 0.96241 0.97679 1.01592 1.22977 0.98283 0.97955 0.99151 1.22601 0.91085 0.92071 0.94188 0.89157 1.20292 0.79076 0.81346 0.89798 1.90678 1.54976 1.43704 1.51391 1.48247 1.47491 1.27236 1.10584 1.21828 0.98987 0.90424 0.90338 1.22021 1.01448 0.93939 1.00037 1.21629 0.97573 1.04810 0.91000 1.18898 0.97062 0.88008 0.94054 0.95264 1.21071 1.36225 0.97915 1.00035 0.92457 1.24936 0.95017 0.96123 0.97742 1.69867 1.41663 1.03743 1.37501 0.86571 0.78784 0.78088 0.84441 1.20702 1.21240 1.19835 1.21906 0.98481 1.01053 0.78740 1.89028 1.56381 1.44366 1.36150 0.92967 0.92786 0.91770 0.90784 0.90812 0.89996 0.90211 0.89662 0.89807 0.91781 0.91260 0.92402 0.92331 0.94557 0.88584 0.92972 0.90294 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.86 37.16 0.37 -1.07 16 2 C -0.12 -1.12 5.69 -26.73 -0.15 -1.27 16 3 C 0.07 0.78 3.29 -25.67 -0.08 0.69 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.41 6.59 -24.73 -0.16 -1.58 16 6 C -0.15 -1.56 5.07 -25.21 -0.13 -1.69 16 7 C 0.06 0.90 2.96 -27.31 -0.08 0.82 16 8 H 0.09 1.18 7.50 -51.93 -0.39 0.79 16 9 C 0.51 9.73 6.89 -10.98 -0.08 9.66 16 10 O -0.53 -12.47 15.94 -14.02 -0.22 -12.70 16 11 N -0.60 -11.23 2.98 -173.05 -0.52 -11.75 16 12 C 0.11 1.61 5.59 -3.71 -0.02 1.59 16 13 C -0.14 -2.37 6.08 -26.61 -0.16 -2.54 16 14 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 0.96 2.24 -91.89 -0.21 0.75 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 18 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.12 2.61 5.63 -3.95 -0.02 2.58 16 26 O -0.34 -5.33 10.30 -54.81 -0.56 -5.89 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 35 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.82 4.84 -51.93 -0.25 0.57 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.88 7.01 -51.93 -0.36 1.52 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -31.58 340.56 -9.37 -40.95 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.56 Total: -0.25 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.25 Total: -7.29 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.11 Total: -36.09 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.79 Total: -18.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.58 -9.37 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.967 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds