Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 H 1.08997 * 109.82214 * 305.88968 * 3 2 1 5 5 C 1.54384 * 109.82852 * 185.00083 * 3 2 1 6 6 C 1.55309 * 102.25280 * 219.13317 * 5 3 2 7 7 C 1.54946 * 100.94207 * 34.13015 * 6 5 3 8 8 H 1.09004 * 110.30879 * 82.57035 * 7 6 5 9 9 C 1.50702 * 110.31196 * 204.64223 * 7 6 5 10 10 O 1.21279 * 119.99871 * 112.03951 * 9 7 6 11 11 N 1.34777 * 119.99763 * 292.04048 * 9 7 6 12 12 C 1.46928 * 120.62797 * 174.89173 * 11 9 7 13 13 C 1.53185 * 108.77678 * 126.41223 * 12 11 9 14 14 C 1.53043 * 109.31175 * 54.63451 * 13 12 11 15 15 C 1.53047 * 109.53879 * 298.63479 * 14 13 12 16 16 H 1.09000 * 109.52252 * 301.39730 * 15 14 13 17 17 C 1.50699 * 109.49626 * 181.31660 * 15 14 13 18 18 H 1.07999 * 119.99559 * 240.15789 * 17 15 14 19 19 C 1.37875 * 120.00110 * 60.16286 * 17 15 14 20 20 N 1.31510 * 120.00105 * 359.72571 * 19 17 15 21 21 Si 1.86805 * 119.99893 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47192 * 59.99613 * 21 19 17 23 23 H 1.48495 * 109.46834 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46857 * 299.99847 * 21 19 17 25 25 C 1.46917 * 120.63213 * 354.91548 * 11 9 7 26 26 O 1.43243 * 109.82676 * 66.86772 * 3 2 1 27 27 H 1.09007 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47470 * 299.99652 * 1 2 3 29 29 H 1.08994 * 109.47471 * 59.99763 * 1 2 3 30 30 H 1.08996 * 109.47168 * 240.00413 * 2 1 3 31 31 H 1.09003 * 109.47106 * 119.99728 * 2 1 3 32 32 H 1.08993 * 110.84968 * 100.94182 * 5 3 2 33 33 H 1.09002 * 110.84634 * 337.31528 * 5 3 2 34 34 H 1.08996 * 111.12164 * 276.21530 * 6 5 3 35 35 H 1.08989 * 111.12645 * 152.05061 * 6 5 3 36 36 H 1.09004 * 109.58290 * 246.20299 * 12 11 9 37 37 H 1.09003 * 109.58612 * 6.48158 * 12 11 9 38 38 H 1.08992 * 109.49980 * 174.58374 * 13 12 11 39 39 H 1.09000 * 109.50052 * 294.65122 * 13 12 11 40 40 H 1.08997 * 109.46289 * 178.61593 * 14 13 12 41 41 H 1.09001 * 109.46122 * 58.65830 * 14 13 12 42 42 H 0.96999 * 120.00329 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.59330 * 113.80006 * 25 11 9 44 44 H 1.09000 * 109.70550 * 353.44352 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9914 -0.8307 5 6 3.5785 1.4541 -0.1266 6 6 3.9797 2.6055 0.8354 7 6 2.8993 2.4589 1.9363 8 1 3.1872 1.6855 2.6484 9 6 2.6944 3.7723 2.6463 10 8 1.6497 4.3747 2.5177 11 7 3.6722 4.2774 3.4243 12 6 3.5326 5.6074 4.0331 13 6 3.7619 5.4852 5.5427 14 6 5.1149 4.8166 5.7966 15 6 5.1122 3.4102 5.1930 16 1 4.3070 2.8248 5.6370 17 6 6.4333 2.7407 5.4716 18 1 7.0582 2.4176 4.6523 19 6 6.8440 2.5407 6.7725 20 7 6.0854 2.9389 7.7702 21 14 8.4813 1.7102 7.1178 22 1 9.5782 2.5083 6.5139 23 1 8.6879 1.6144 8.5852 24 1 8.4788 0.3470 6.5287 25 6 4.8981 3.5090 3.6793 26 8 1.7027 2.0771 1.2392 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8820 1.6793 -1.1489 33 1 4.0022 0.5062 0.2052 34 1 3.9075 3.5740 0.3405 35 1 4.9786 2.4477 1.2419 36 1 4.2715 6.2846 3.6047 37 1 2.5307 5.9926 3.8435 38 1 3.7564 6.4777 5.9930 39 1 2.9688 4.8813 5.9835 40 1 5.2917 4.7506 6.8701 41 1 5.9050 5.4086 5.3345 42 1 6.3745 2.7986 8.6854 43 1 5.7485 4.0150 3.2223 44 1 4.7990 2.5085 3.2583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -100.102706 kcal Electronic energy + Delta-G solvation = -23290.353731 eV Core-core repulsion = 20013.771653 eV Total energy + Delta-G solvation = -3276.582078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33057 -38.72594 -36.65612 -33.62963 -33.39143 -32.41371 -31.41031 -30.19036 -28.53641 -25.24626 -24.95708 -23.67899 -21.85286 -21.67971 -20.90464 -19.81627 -18.42921 -17.47056 -16.49835 -16.08961 -15.67283 -15.43742 -14.69688 -14.37321 -14.21301 -13.89480 -13.44283 -13.35917 -13.16614 -12.95765 -12.84895 -12.57319 -12.17875 -11.91518 -11.88571 -11.84231 -11.52558 -11.03684 -11.02055 -10.95137 -10.88885 -10.82255 -10.70623 -10.31228 -10.01811 -9.79352 -9.74638 -9.57485 -8.99168 -8.89616 -8.45228 -7.93267 -6.08693 -4.17846 2.96089 3.23759 3.25029 3.31071 3.32644 4.01575 4.34236 4.40661 4.58908 4.75084 5.03844 5.05531 5.08351 5.20540 5.23346 5.34526 5.43529 5.62342 5.66412 5.71198 5.73502 5.77514 5.82980 5.84974 5.88265 5.99282 6.04128 6.18666 6.19607 6.26491 6.29539 6.47759 6.53789 6.75714 6.90342 7.06625 7.14678 7.31523 7.61164 7.84115 7.90578 8.02551 8.28495 8.62593 8.85568 9.47874 10.96371 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.004809 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.678332 B = 5820.745044 C = 6750.518519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.077 3.923 4 H 0.079 0.921 5 C -0.150 4.150 6 C -0.144 4.144 7 C 0.066 3.934 8 H 0.098 0.902 9 C 0.513 3.487 10 O -0.543 6.543 11 N -0.600 5.600 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.109 3.891 26 O -0.348 6.348 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -2.190 -13.433 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.019 3.981 4 H 0.097 0.903 5 C -0.187 4.187 6 C -0.182 4.182 7 C 0.005 3.995 8 H 0.116 0.884 9 C 0.300 3.700 10 O -0.421 6.421 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.049 0.951 17 C -0.558 4.558 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.012 4.012 26 O -0.266 6.266 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.499 -1.832 -13.229 14.092 hybrid contribution 1.229 -0.529 0.301 1.371 sum -3.270 -2.361 -12.928 13.542 Atomic orbital electron populations 1.21708 0.95332 1.01214 1.02427 1.21911 0.97024 0.95743 1.02367 1.22841 0.94276 0.93496 0.87494 0.90337 1.23192 0.95296 0.99502 1.00745 1.23265 0.99552 0.99785 0.95628 1.22810 0.85996 0.95407 0.95296 0.88438 1.20306 0.83572 0.86633 0.79474 1.90641 1.26322 1.61445 1.63683 1.48214 1.18981 1.18640 1.47569 1.21575 1.01721 0.83186 0.94164 1.21994 1.00993 1.00399 0.93851 1.21624 0.92139 0.96342 1.04874 1.18989 0.97424 0.93831 0.87801 0.95138 1.20997 1.03772 1.38953 0.92127 0.92507 1.24936 0.97082 0.95373 0.96268 1.69862 1.37232 1.46263 0.99005 0.86652 0.84090 0.80035 0.77183 1.20233 1.21282 1.20245 1.22218 0.84014 0.94034 1.00957 1.88542 1.27688 1.77840 1.32520 0.93047 0.91786 0.93017 0.91170 0.91289 0.89849 0.89923 0.90082 0.88529 0.92242 0.90261 0.92499 0.92407 0.88640 0.94564 0.92788 0.92180 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.83 37.16 0.37 -1.19 16 2 C -0.13 -1.36 5.50 -26.73 -0.15 -1.51 16 3 C 0.08 0.92 3.51 -26.00 -0.09 0.82 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.51 6.54 -24.78 -0.16 -1.67 16 6 C -0.14 -1.79 5.95 -24.48 -0.15 -1.93 16 7 C 0.07 1.04 2.90 -26.86 -0.08 0.96 16 8 H 0.10 1.52 7.18 -51.93 -0.37 1.15 16 9 C 0.51 9.81 7.07 -10.98 -0.08 9.73 16 10 O -0.54 -12.11 15.97 -13.76 -0.22 -12.33 16 11 N -0.60 -11.17 2.97 -172.77 -0.51 -11.68 16 12 C 0.12 2.08 6.44 -3.71 -0.02 2.05 16 13 C -0.13 -2.56 6.08 -26.61 -0.16 -2.72 16 14 C -0.11 -2.48 4.96 -26.68 -0.13 -2.61 16 15 C 0.04 0.89 2.25 -91.65 -0.21 0.68 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.09 8.56 -34.44 -0.29 -13.38 16 18 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 19 C 0.07 1.71 5.31 -17.82 -0.09 1.61 16 20 N -0.89 -24.10 11.31 55.43 0.63 -23.47 16 21 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 C 0.11 2.05 4.81 -3.71 -0.02 2.04 16 26 O -0.35 -5.67 9.90 -54.55 -0.54 -6.21 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 35 H 0.10 1.11 6.91 -51.93 -0.36 0.75 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.20 4.92 -51.93 -0.26 0.95 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -29.50 340.33 -9.32 -38.82 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.51 Total: 1.79 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.27 Total: -7.12 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.11 Total: -35.15 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.76 Total: -18.54 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.50 -9.32 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.281 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds