Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47270 * 2 1 4 4 H 1.09009 * 110.35235 * 304.30972 * 3 2 1 5 5 C 1.54946 * 110.31140 * 182.17038 * 3 2 1 6 6 C 1.55300 * 100.94264 * 204.63833 * 5 3 2 7 7 C 1.54387 * 102.25430 * 34.13347 * 6 5 3 8 8 H 1.08998 * 109.91038 * 98.19579 * 7 6 5 9 9 C 1.50700 * 109.83037 * 219.13039 * 7 6 5 10 10 O 1.21283 * 119.99803 * 114.58267 * 9 7 6 11 11 N 1.34777 * 119.99675 * 294.86142 * 9 7 6 12 12 C 1.46921 * 120.63392 * 359.43977 * 11 9 7 13 13 C 1.52760 * 109.00994 * 233.58899 * 12 11 9 14 14 C 1.53036 * 109.38235 * 305.58739 * 13 12 11 15 15 C 1.53035 * 109.53955 * 61.24292 * 14 13 12 16 16 H 1.08998 * 109.52797 * 58.59747 * 15 14 13 17 17 C 1.50701 * 109.50156 * 178.68122 * 15 14 13 18 18 H 1.08000 * 120.00073 * 119.83153 * 17 15 14 19 19 C 1.37879 * 119.99944 * 299.84134 * 17 15 14 20 20 N 1.31513 * 119.99682 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99938 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47500 * 59.99678 * 21 19 17 23 23 H 1.48499 * 109.47417 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.47190 * 299.99663 * 21 19 17 25 25 C 1.46924 * 120.62813 * 179.72946 * 11 9 7 26 26 O 1.43239 * 107.58540 * 338.64109 * 7 6 5 27 27 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46568 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.46941 * 59.99888 * 1 2 3 30 30 H 1.09007 * 109.46590 * 240.00164 * 2 1 3 31 31 H 1.08993 * 109.47249 * 120.00311 * 2 1 3 32 32 H 1.09004 * 111.12494 * 322.55876 * 5 3 2 33 33 H 1.09004 * 111.12632 * 86.67653 * 5 3 2 34 34 H 1.09002 * 110.85198 * 275.94098 * 6 5 3 35 35 H 1.09005 * 110.84703 * 152.31795 * 6 5 3 36 36 H 1.09004 * 109.58490 * 353.42409 * 12 11 9 37 37 H 1.09002 * 109.58518 * 113.84767 * 12 11 9 38 38 H 1.09005 * 109.56000 * 185.55371 * 13 12 11 39 39 H 1.09001 * 109.36136 * 65.50440 * 13 12 11 40 40 H 1.09002 * 109.46377 * 301.22063 * 14 13 12 41 41 H 1.09001 * 109.45993 * 181.26248 * 14 13 12 42 42 H 0.97005 * 119.99706 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.58353 * 246.15683 * 25 11 9 44 44 H 1.09004 * 109.59032 * 6.43097 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6233 1.9919 -0.8442 5 6 3.5884 1.4655 -0.0550 6 6 3.8857 2.8475 0.5879 7 6 2.7562 2.9725 1.6330 8 1 3.1270 2.6841 2.6166 9 6 2.2516 4.3919 1.6731 10 8 1.1162 4.6418 1.3273 11 7 3.0637 5.3844 2.0878 12 6 4.4395 5.0965 2.5155 13 6 4.6594 5.6799 3.9101 14 6 4.3022 7.1680 3.9002 15 6 2.8269 7.3378 3.5309 16 1 2.2073 6.8005 4.2488 17 6 2.4680 8.8013 3.5530 18 1 2.1059 9.2822 2.6563 19 6 2.6021 9.5265 4.7180 20 7 3.0427 8.9408 5.8100 21 14 2.1580 11.3406 4.7452 22 1 0.7274 11.5056 4.3826 23 1 2.3891 11.8865 6.1068 24 1 3.0038 12.0721 3.7680 25 6 2.5880 6.7739 2.1267 26 8 1.6989 2.0919 1.2350 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.0146 0.6564 0.5381 33 1 3.9456 1.4252 -1.0841 34 1 3.8176 3.6433 -0.1539 35 1 4.8629 2.8485 1.0709 36 1 4.5954 4.0180 2.5433 37 1 5.1420 5.5514 1.8172 38 1 5.7042 5.5583 4.1959 39 1 4.0231 5.1577 4.6247 40 1 4.9218 7.6853 3.1677 41 1 4.4800 7.5906 4.8891 42 1 3.1367 9.4509 6.6297 43 1 3.1364 7.3685 1.3959 44 1 1.5231 6.8023 1.8955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -98.377219 kcal Electronic energy + Delta-G solvation = -23142.533963 eV Core-core repulsion = 19866.026708 eV Total energy + Delta-G solvation = -3276.507255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43357 -38.66630 -36.61798 -33.86714 -33.48050 -32.26140 -31.28717 -30.37111 -28.57634 -25.20467 -25.04133 -23.52763 -22.00877 -21.62812 -21.12129 -19.78533 -18.40806 -17.45927 -16.47762 -16.24046 -16.05170 -15.20932 -14.71826 -14.27752 -14.11606 -13.83069 -13.54800 -13.40137 -13.19891 -13.01136 -12.91607 -12.69679 -12.11697 -12.06543 -11.94023 -11.79767 -11.57685 -11.16949 -10.98085 -10.95881 -10.87655 -10.78854 -10.69472 -10.29800 -10.04340 -9.95178 -9.78487 -9.44465 -8.99251 -8.76888 -8.38403 -7.89385 -6.01823 -4.08948 2.98607 3.31029 3.31931 3.36104 3.40091 3.86123 4.28492 4.42691 4.47146 4.64931 4.87990 4.96722 5.01962 5.12166 5.22862 5.28464 5.32474 5.37655 5.51430 5.59784 5.60301 5.64724 5.76285 5.77970 5.81024 5.88141 6.06052 6.09876 6.23969 6.31630 6.38509 6.47137 6.65501 6.78604 6.90553 7.02172 7.16535 7.32775 7.68736 7.91419 8.01148 8.07141 8.37572 8.67355 8.94492 9.55849 11.03746 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033747 B = 0.003817 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.506411 B = 7334.153780 C = 7769.510796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.076 3.924 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.103 0.897 9 C 0.496 3.504 10 O -0.534 6.534 11 N -0.601 5.601 12 C 0.107 3.893 13 C -0.137 4.137 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.118 3.882 26 O -0.346 6.346 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -16.273 -9.792 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.089 0.911 5 C -0.188 4.188 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.120 0.880 9 C 0.283 3.717 10 O -0.411 6.411 11 N -0.335 5.335 12 C -0.016 4.016 13 C -0.175 4.175 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.003 4.003 26 O -0.264 6.264 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.583 -16.132 -9.682 19.365 hybrid contribution 0.112 1.134 0.098 1.144 sum 4.695 -14.998 -9.584 18.408 Atomic orbital electron populations 1.21720 0.95149 1.01235 1.02759 1.21638 0.97068 0.94531 1.02356 1.23102 0.93487 0.93685 0.87919 0.91108 1.23329 0.96091 0.97263 1.02144 1.23173 0.98617 0.98248 0.98253 1.22616 0.87881 0.89094 0.99882 0.87990 1.20805 0.85915 0.86925 0.78104 1.90670 1.18539 1.83679 1.48212 1.48285 1.12970 1.08607 1.63677 1.21757 0.82977 0.99526 0.97324 1.21949 1.00252 1.00347 0.94962 1.21622 0.98387 0.90917 1.04053 1.18967 0.93221 0.95627 0.90095 0.95239 1.21042 1.43906 0.94083 0.96325 0.92534 1.24935 0.94983 0.98379 0.95502 1.69864 1.46147 1.36135 1.00637 0.86633 0.79099 0.85133 0.76990 1.20212 1.21312 1.20264 1.21996 0.99864 0.77900 1.00565 1.88531 1.41126 1.57381 1.39333 0.92977 0.91692 0.92825 0.90913 0.91253 0.89997 0.89732 0.89943 0.88931 0.91209 0.91854 0.92379 0.92341 0.94569 0.88630 0.92918 0.92727 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.83 37.16 0.37 -1.16 16 2 C -0.12 -1.10 5.68 -26.73 -0.15 -1.25 16 3 C 0.08 0.87 3.43 -25.71 -0.09 0.78 16 4 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 5 C -0.15 -1.32 6.57 -24.48 -0.16 -1.48 16 6 C -0.15 -1.52 5.39 -24.79 -0.13 -1.65 16 7 C 0.07 0.96 3.06 -27.16 -0.08 0.87 16 8 H 0.10 1.32 7.46 -51.93 -0.39 0.94 16 9 C 0.50 9.42 6.97 -10.98 -0.08 9.35 16 10 O -0.53 -12.46 15.94 -14.10 -0.22 -12.69 16 11 N -0.60 -11.20 2.98 -173.03 -0.52 -11.72 16 12 C 0.11 1.61 5.68 -3.94 -0.02 1.58 16 13 C -0.14 -2.38 6.06 -26.84 -0.16 -2.55 16 14 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.12 2.58 5.66 -3.71 -0.02 2.56 16 26 O -0.35 -5.35 9.90 -54.88 -0.54 -5.90 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.09 0.76 6.98 -51.93 -0.36 0.40 16 36 H 0.07 0.82 4.50 -51.93 -0.23 0.59 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -31.60 339.96 -9.33 -40.93 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.51 Total: -0.07 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.26 Total: -7.46 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.11 Total: -36.11 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.77 Total: -18.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.60 -9.33 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.450 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds