Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.09003 * 110.55005 * 307.87207 * 3 2 1 5 5 C 1.54998 * 110.61753 * 184.99848 * 3 2 1 6 6 C 1.54809 * 102.09067 * 204.31315 * 5 3 2 7 7 C 1.54105 * 104.18799 * 20.88137 * 6 5 3 8 8 H 1.09002 * 109.87427 * 242.45600 * 7 6 5 9 9 C 1.50695 * 109.87911 * 121.45239 * 7 6 5 10 10 O 1.21282 * 120.00311 * 245.30851 * 9 7 6 11 11 N 1.34787 * 120.00131 * 65.30682 * 9 7 6 12 12 C 1.46928 * 120.62612 * 359.97438 * 11 9 7 13 13 C 1.53196 * 108.77179 * 233.60865 * 12 11 9 14 14 C 1.53034 * 109.31254 * 305.36568 * 13 12 11 15 15 C 1.53040 * 109.53997 * 61.37000 * 14 13 12 16 16 H 1.09006 * 109.49985 * 58.61328 * 15 14 13 17 17 C 1.50697 * 109.50310 * 178.68254 * 15 14 13 18 18 H 1.07991 * 120.00449 * 119.72162 * 17 15 14 19 19 C 1.37885 * 119.99686 * 299.99993 * 17 15 14 20 20 N 1.31514 * 120.00035 * 179.72339 * 19 17 15 21 21 Si 1.86803 * 119.99853 * 359.72191 * 19 17 15 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 C 1.46920 * 120.63255 * 180.02562 * 11 9 7 26 26 O 1.43740 * 107.41873 * 1.95466 * 7 6 5 27 27 H 1.09007 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47781 * 300.00673 * 1 2 3 29 29 H 1.09004 * 109.47161 * 60.00873 * 1 2 3 30 30 H 1.08998 * 109.47260 * 239.99340 * 2 1 3 31 31 H 1.09006 * 109.46604 * 119.99637 * 2 1 3 32 32 H 1.09001 * 110.90562 * 86.11706 * 5 3 2 33 33 H 1.09000 * 110.90790 * 322.51193 * 5 3 2 34 34 H 1.08996 * 110.48919 * 262.20367 * 6 5 3 35 35 H 1.09006 * 110.48637 * 139.55493 * 6 5 3 36 36 H 1.08999 * 109.57944 * 113.82298 * 12 11 9 37 37 H 1.08990 * 109.59091 * 353.39786 * 12 11 9 38 38 H 1.08997 * 109.49049 * 185.41680 * 13 12 11 39 39 H 1.08997 * 109.49509 * 65.32365 * 13 12 11 40 40 H 1.09005 * 109.46564 * 301.34805 * 14 13 12 41 41 H 1.09002 * 109.45061 * 181.38121 * 14 13 12 42 42 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58829 * 6.59992 * 25 11 9 44 44 H 1.09005 * 109.58662 * 246.17992 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0121 -0.8057 5 6 3.5844 1.4753 -0.1264 6 6 3.9329 2.8427 0.5104 7 6 2.7066 3.1770 1.3819 8 1 2.2326 4.0894 1.0201 9 6 3.1310 3.3544 2.8169 10 8 2.7438 2.5779 3.6643 11 7 3.9408 4.3762 3.1588 12 6 4.4185 5.3247 2.1435 13 6 5.9471 5.3969 2.2167 14 6 6.3696 5.7411 3.6467 15 6 5.8918 4.6432 4.6000 16 1 6.3164 3.6866 4.2953 17 6 6.3362 4.9668 6.0031 18 1 5.6028 5.1033 6.7839 19 6 7.6791 5.0941 6.2888 20 7 8.0668 5.3818 7.5121 21 14 8.9478 4.8578 4.9381 22 1 9.2184 6.1612 4.2798 23 1 10.2049 4.3301 5.5266 24 1 8.4286 3.8946 3.9342 25 6 4.3635 4.5619 4.5536 26 8 1.7901 2.0748 1.2759 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.8898 1.4442 -1.1723 33 1 4.0381 0.6582 0.4344 34 1 4.0697 3.5995 -0.2620 35 1 4.8279 2.7594 1.1270 36 1 3.9964 6.3107 2.3375 37 1 4.1158 4.9836 1.1536 38 1 6.3078 6.1673 1.5353 39 1 6.3707 4.4332 1.9341 40 1 5.9254 6.6931 3.9376 41 1 7.4558 5.8171 3.6959 42 1 9.0115 5.4709 7.7131 43 1 4.0244 3.7175 5.1538 44 1 3.9369 5.4856 4.9448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = -89.009654 kcal Electronic energy + Delta-G solvation = -23358.112043 eV Core-core repulsion = 20082.010996 eV Total energy + Delta-G solvation = -3276.101047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53070 -38.81279 -36.88785 -33.95074 -33.53799 -32.26860 -31.71259 -30.67398 -28.78631 -25.49852 -25.08353 -23.76298 -21.93213 -21.71620 -21.15838 -20.14991 -18.53535 -17.30092 -16.79290 -16.51606 -16.22872 -15.29447 -14.88828 -14.41197 -14.17056 -13.99228 -13.82631 -13.75244 -13.49876 -13.20146 -12.98772 -12.59892 -12.53338 -12.40228 -11.90083 -11.84830 -11.63177 -11.42421 -11.22917 -11.13022 -10.97559 -10.81758 -10.67652 -10.34328 -10.17602 -10.05433 -9.85269 -9.50136 -9.19375 -8.98860 -8.58608 -8.10635 -6.11335 -4.11415 2.88552 3.08210 3.21314 3.33431 3.35820 3.86031 4.29246 4.36342 4.44594 4.63639 4.68467 4.89397 4.99662 5.03112 5.10831 5.14111 5.19660 5.28157 5.37382 5.45136 5.50930 5.54503 5.61630 5.74900 5.78124 5.82065 5.85971 5.95055 5.99549 6.02658 6.14050 6.17215 6.33001 6.50888 6.61729 6.69086 6.76403 6.85461 7.12344 7.43467 7.70704 7.80920 8.45030 8.53658 8.92298 9.50023 11.01725 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.004298 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.092279 B = 6512.905330 C = 6712.052725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.063 3.937 8 H 0.090 0.910 9 C 0.509 3.491 10 O -0.526 6.526 11 N -0.606 5.606 12 C 0.106 3.894 13 C -0.139 4.139 14 C -0.122 4.122 15 C 0.005 3.995 16 H 0.030 0.970 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.129 3.871 26 O -0.341 6.341 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.086 0.914 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -3.986 -20.444 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.015 3.985 4 H 0.089 0.911 5 C -0.187 4.187 6 C -0.186 4.186 7 C 0.001 3.999 8 H 0.107 0.893 9 C 0.296 3.704 10 O -0.402 6.402 11 N -0.341 5.341 12 C -0.017 4.017 13 C -0.177 4.177 14 C -0.160 4.160 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.553 4.553 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.192 1.192 25 C 0.008 3.992 26 O -0.260 6.260 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.579 -4.445 -19.688 22.341 hybrid contribution 1.130 0.237 -0.823 1.417 sum -8.449 -4.208 -20.511 22.579 Atomic orbital electron populations 1.21738 0.95243 1.01589 1.02263 1.21549 0.96775 0.94281 1.02875 1.23295 0.94172 0.94518 0.86519 0.91134 1.23191 0.96107 0.97716 1.01705 1.23011 0.98409 0.97972 0.99216 1.22591 0.91130 0.92137 0.94038 0.89280 1.20335 0.79146 0.81062 0.89901 1.90696 1.54932 1.43223 1.51307 1.48272 1.47761 1.27535 1.10537 1.21807 0.95440 0.93310 0.91190 1.22008 0.94614 1.01587 0.99491 1.21990 1.00119 1.01117 0.92774 1.19453 0.91240 0.94683 0.96034 0.95225 1.20909 0.93104 1.48498 0.92766 0.90557 1.24987 0.98396 0.94357 0.95293 1.69893 1.16164 1.48432 1.19125 0.86824 0.80691 0.78392 0.82192 1.20570 1.22489 1.19162 1.21766 0.96621 1.01902 0.78900 1.89059 1.55954 1.44292 1.36664 0.92746 0.91835 0.92991 0.90705 0.90733 0.89918 0.90078 0.89599 0.89520 0.91304 0.90577 0.91658 0.92134 0.91850 0.93169 0.92578 0.89575 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.86 37.16 0.37 -0.99 16 2 C -0.12 -1.10 5.70 -26.73 -0.15 -1.25 16 3 C 0.07 0.76 3.28 -25.68 -0.08 0.67 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -1.43 6.59 -24.72 -0.16 -1.60 16 6 C -0.15 -1.59 4.95 -25.20 -0.12 -1.71 16 7 C 0.06 0.85 2.95 -27.31 -0.08 0.76 16 8 H 0.09 1.00 7.74 -51.93 -0.40 0.59 16 9 C 0.51 9.17 6.89 -10.98 -0.08 9.10 16 10 O -0.53 -11.84 15.94 -14.01 -0.22 -12.06 16 11 N -0.61 -10.53 2.97 -172.82 -0.51 -11.05 16 12 C 0.11 1.42 5.85 -3.71 -0.02 1.40 16 13 C -0.14 -2.10 6.08 -26.61 -0.16 -2.26 16 14 C -0.12 -2.44 4.66 -26.69 -0.12 -2.57 16 15 C 0.01 0.13 1.84 -91.69 -0.17 -0.04 16 16 H 0.03 0.73 7.19 -51.93 -0.37 0.36 16 17 C -0.51 -14.23 9.15 -34.44 -0.31 -14.54 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 20 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 21 Si 0.89 21.60 24.40 -169.99 -4.15 17.45 16 22 H -0.28 -6.49 6.85 56.52 0.39 -6.11 16 23 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 25 C 0.13 2.68 5.65 -3.76 -0.02 2.66 16 26 O -0.34 -5.04 10.32 -54.80 -0.57 -5.61 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.09 0.67 7.55 -51.93 -0.39 0.28 16 35 H 0.09 1.08 7.53 -51.93 -0.39 0.69 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.78 4.43 -51.93 -0.23 0.55 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 1.97 7.01 -51.93 -0.36 1.61 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -33.17 333.67 -8.28 -41.46 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.41 Total: -0.28 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.22 Total: -8.43 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.26 Total: -37.55 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.79 Total: -17.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.17 -8.28 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.552 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds