Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.09003 * 110.55005 * 307.87207 * 3 2 1 5 5 C 1.54998 * 110.61753 * 184.99848 * 3 2 1 6 6 C 1.54809 * 102.09067 * 204.31315 * 5 3 2 7 7 C 1.54105 * 104.18799 * 20.88137 * 6 5 3 8 8 H 1.09002 * 109.87427 * 242.45600 * 7 6 5 9 9 C 1.50695 * 109.87911 * 121.45239 * 7 6 5 10 10 O 1.21282 * 120.00311 * 245.30851 * 9 7 6 11 11 N 1.34787 * 120.00131 * 65.30682 * 9 7 6 12 12 C 1.46928 * 120.62612 * 359.97438 * 11 9 7 13 13 C 1.53196 * 108.77179 * 233.60865 * 12 11 9 14 14 C 1.53034 * 109.31254 * 305.36568 * 13 12 11 15 15 C 1.53040 * 109.53997 * 61.37000 * 14 13 12 16 16 H 1.09006 * 109.49985 * 58.61328 * 15 14 13 17 17 C 1.50697 * 109.50310 * 178.68254 * 15 14 13 18 18 H 1.07991 * 120.00449 * 119.72162 * 17 15 14 19 19 C 1.37885 * 119.99686 * 299.99993 * 17 15 14 20 20 N 1.31514 * 120.00035 * 179.72339 * 19 17 15 21 21 Si 1.86803 * 119.99853 * 359.72191 * 19 17 15 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 C 1.46920 * 120.63255 * 180.02562 * 11 9 7 26 26 O 1.43740 * 107.41873 * 1.95466 * 7 6 5 27 27 H 1.09007 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47781 * 300.00673 * 1 2 3 29 29 H 1.09004 * 109.47161 * 60.00873 * 1 2 3 30 30 H 1.08998 * 109.47260 * 239.99340 * 2 1 3 31 31 H 1.09006 * 109.46604 * 119.99637 * 2 1 3 32 32 H 1.09001 * 110.90562 * 86.11706 * 5 3 2 33 33 H 1.09000 * 110.90790 * 322.51193 * 5 3 2 34 34 H 1.08996 * 110.48919 * 262.20367 * 6 5 3 35 35 H 1.09006 * 110.48637 * 139.55493 * 6 5 3 36 36 H 1.08999 * 109.57944 * 113.82298 * 12 11 9 37 37 H 1.08990 * 109.59091 * 353.39786 * 12 11 9 38 38 H 1.08997 * 109.49049 * 185.41680 * 13 12 11 39 39 H 1.08997 * 109.49509 * 65.32365 * 13 12 11 40 40 H 1.09005 * 109.46564 * 301.34805 * 14 13 12 41 41 H 1.09002 * 109.45061 * 181.38121 * 14 13 12 42 42 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58829 * 6.59992 * 25 11 9 44 44 H 1.09005 * 109.58662 * 246.17992 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0121 -0.8057 5 6 3.5844 1.4753 -0.1264 6 6 3.9329 2.8427 0.5104 7 6 2.7066 3.1770 1.3819 8 1 2.2326 4.0894 1.0201 9 6 3.1310 3.3544 2.8169 10 8 2.7438 2.5779 3.6643 11 7 3.9408 4.3762 3.1588 12 6 4.4185 5.3247 2.1435 13 6 5.9471 5.3969 2.2167 14 6 6.3696 5.7411 3.6467 15 6 5.8918 4.6432 4.6000 16 1 6.3164 3.6866 4.2953 17 6 6.3362 4.9668 6.0031 18 1 5.6028 5.1033 6.7839 19 6 7.6791 5.0941 6.2888 20 7 8.0668 5.3818 7.5121 21 14 8.9478 4.8578 4.9381 22 1 9.2184 6.1612 4.2798 23 1 10.2049 4.3301 5.5266 24 1 8.4286 3.8946 3.9342 25 6 4.3635 4.5619 4.5536 26 8 1.7901 2.0748 1.2759 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.8898 1.4442 -1.1723 33 1 4.0381 0.6582 0.4344 34 1 4.0697 3.5995 -0.2620 35 1 4.8279 2.7594 1.1270 36 1 3.9964 6.3107 2.3375 37 1 4.1158 4.9836 1.1536 38 1 6.3078 6.1673 1.5353 39 1 6.3707 4.4332 1.9341 40 1 5.9254 6.6931 3.9376 41 1 7.4558 5.8171 3.6959 42 1 9.0115 5.4709 7.7131 43 1 4.0244 3.7175 5.1538 44 1 3.9369 5.4856 4.9448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = -111.279118 kcal Electronic energy + Delta-G solvation = -23359.077720 eV Core-core repulsion = 20082.010996 eV Total energy + Delta-G solvation = -3277.066723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71303 -39.97010 -38.40248 -35.49780 -34.57624 -33.71224 -33.00128 -32.18406 -29.82258 -27.07651 -26.60125 -24.82510 -23.22531 -22.75898 -21.92646 -21.72989 -19.94246 -18.90607 -18.34964 -17.54705 -17.39041 -16.75401 -16.44479 -15.61541 -15.50300 -15.40205 -14.94349 -14.76021 -14.69963 -14.55588 -14.15866 -14.02983 -13.93560 -13.77615 -13.05891 -12.90209 -12.79898 -12.61684 -12.46322 -12.40038 -12.11374 -12.03554 -11.83373 -11.74492 -11.53119 -11.47950 -11.25180 -11.11101 -10.97507 -10.70181 -10.39349 -9.59163 -8.33254 -6.38993 1.26764 1.35042 1.45348 1.54607 1.83609 2.30085 2.91297 3.01492 3.36359 3.53309 3.83538 3.84910 3.97221 4.04805 4.18411 4.20154 4.23554 4.29605 4.31952 4.39175 4.51143 4.57568 4.63110 4.73962 4.76867 4.86274 4.87547 4.93006 4.96371 5.02514 5.08043 5.10248 5.13887 5.15751 5.24382 5.36893 5.40578 5.42664 5.63281 5.72536 5.91881 6.23641 6.47437 6.67373 7.15505 7.26689 8.83671 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.004298 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.092279 B = 6512.905330 C = 6712.052725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.066 3.934 4 H 0.099 0.901 5 C -0.146 4.146 6 C -0.146 4.146 7 C 0.067 3.933 8 H 0.125 0.875 9 C 0.499 3.501 10 O -0.588 6.588 11 N -0.605 5.605 12 C 0.101 3.899 13 C -0.132 4.132 14 C -0.122 4.122 15 C 0.010 3.990 16 H 0.012 0.988 17 C -0.525 4.525 18 H 0.030 0.970 19 C 0.011 3.989 20 N -0.949 5.949 21 Si 0.958 3.042 22 H -0.253 1.253 23 H -0.302 1.302 24 H -0.251 1.251 25 C 0.138 3.862 26 O -0.380 6.380 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.267 0.733 43 H 0.049 0.951 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 -3.057 -26.048 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.009 3.991 4 H 0.117 0.883 5 C -0.183 4.183 6 C -0.183 4.183 7 C 0.006 3.994 8 H 0.142 0.858 9 C 0.288 3.712 10 O -0.468 6.468 11 N -0.338 5.338 12 C -0.020 4.020 13 C -0.170 4.170 14 C -0.160 4.160 15 C -0.009 4.009 16 H 0.031 0.969 17 C -0.564 4.564 18 H 0.049 0.951 19 C -0.186 4.186 20 N -0.589 5.589 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.230 1.230 24 H -0.176 1.176 25 C 0.016 3.984 26 O -0.299 6.299 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.228 -3.490 -25.343 27.196 hybrid contribution 0.913 -0.098 1.047 1.393 sum -8.316 -3.588 -24.296 25.929 Atomic orbital electron populations 1.21723 0.95134 1.02032 1.01773 1.21610 0.96921 0.94208 1.02923 1.23611 0.95143 0.94813 0.85486 0.88315 1.23214 0.95187 0.96477 1.03464 1.23108 0.95897 0.99919 0.99393 1.22739 0.92706 0.93422 0.90512 0.85813 1.21441 0.78080 0.79872 0.91844 1.90663 1.57179 1.45411 1.53559 1.48310 1.47506 1.28351 1.09618 1.22199 0.94476 0.93416 0.91926 1.21999 0.95609 1.03027 0.96380 1.21865 0.99237 0.99499 0.95383 1.19314 0.92423 0.95107 0.94092 0.96948 1.21235 0.92609 1.48020 0.94525 0.95140 1.25925 1.00802 0.93947 0.97893 1.70058 1.16806 1.50316 1.21744 0.85714 0.77036 0.79703 0.79165 1.17861 1.23000 1.17562 1.21298 0.95367 1.00286 0.81483 1.89047 1.56517 1.45138 1.39247 0.91941 0.94536 0.91145 0.87849 0.93432 0.86234 0.92164 0.85010 0.91490 0.89387 0.86129 0.87274 0.92109 0.91693 0.94322 0.92426 0.93276 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.86 71.98 0.71 -1.76 16 2 C -0.12 -2.03 5.70 30.59 0.17 -1.86 16 3 C 0.07 1.17 3.28 31.28 0.10 1.28 16 4 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.15 -2.23 6.59 31.90 0.21 -2.02 16 6 C -0.15 -2.44 4.95 31.59 0.16 -2.28 16 7 C 0.07 1.62 2.95 30.22 0.09 1.71 16 8 H 0.12 2.13 7.74 -2.39 -0.02 2.11 16 9 C 0.50 17.80 6.89 87.65 0.60 18.41 16 10 O -0.59 -27.90 15.94 15.68 0.25 -27.65 16 11 N -0.60 -20.35 2.97 -819.06 -2.44 -22.78 16 12 C 0.10 2.25 5.85 86.36 0.50 2.75 16 13 C -0.13 -3.35 6.08 30.67 0.19 -3.17 16 14 C -0.12 -4.61 4.66 30.62 0.14 -4.47 16 15 C 0.01 0.48 1.84 -11.49 -0.02 0.46 16 16 H 0.01 0.62 7.19 -2.38 -0.02 0.60 16 17 C -0.53 -30.62 9.15 25.60 0.23 -30.38 16 18 H 0.03 1.98 7.99 -2.92 -0.02 1.96 16 19 C 0.01 0.67 5.45 84.66 0.46 1.13 16 20 N -0.95 -60.13 13.96 21.45 0.30 -59.84 16 21 Si 0.96 44.69 24.40 68.60 1.67 46.36 16 22 H -0.25 -10.75 6.85 99.48 0.68 -10.07 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 25 C 0.14 5.99 5.65 86.34 0.49 6.48 16 26 O -0.38 -10.73 10.32 -130.27 -1.34 -12.08 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.04 0.79 8.06 -2.39 -0.02 0.77 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 34 H 0.13 1.04 7.55 -2.39 -0.02 1.02 16 35 H 0.07 1.43 7.53 -2.38 -0.02 1.42 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.12 1.67 4.43 -2.39 -0.01 1.66 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.05 2.45 7.01 -2.39 -0.02 2.43 16 44 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -81.08 333.67 3.37 -77.70 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.89 Total: 12.00 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.04 Total: -13.73 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.14 Total: -82.62 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.09 Total: -39.72 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.67 Total: 46.36 kcal Total: -81.08 3.37 -77.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.574 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds