Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47209 * 2 1 4 4 C 1.52993 * 109.47412 * 120.00572 * 2 1 3 5 5 C 1.50697 * 109.47470 * 178.17675 * 4 2 1 6 6 O 1.21281 * 119.99723 * 5.15145 * 5 4 2 7 7 N 1.34772 * 120.00111 * 185.15664 * 5 4 2 8 8 C 1.46924 * 120.63249 * 359.97438 * 7 5 4 9 9 C 1.53195 * 108.77607 * 126.37006 * 8 7 5 10 10 C 1.53035 * 109.31070 * 54.63627 * 9 8 7 11 11 C 1.53047 * 109.53993 * 298.63379 * 10 9 8 12 12 H 1.08997 * 109.49392 * 301.41374 * 11 10 9 13 13 C 1.50703 * 109.49486 * 181.35122 * 11 10 9 14 14 H 1.07997 * 119.99786 * 239.99905 * 13 11 10 15 15 C 1.37869 * 120.00197 * 60.00493 * 13 11 10 16 16 N 1.31515 * 120.00067 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00044 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47162 * 89.99750 * 17 15 13 19 19 H 1.48497 * 109.47251 * 209.99700 * 17 15 13 20 20 H 1.48502 * 109.47257 * 329.99773 * 17 15 13 21 21 C 1.46935 * 120.62912 * 179.72017 * 7 5 4 22 22 C 1.53009 * 109.46647 * 240.00375 * 2 1 3 23 23 C 1.52996 * 117.51927 * 351.28342 * 22 2 1 24 24 C 1.53000 * 117.49986 * 59.91576 * 22 2 1 25 25 H 1.08996 * 109.47763 * 185.03612 * 1 2 3 26 26 H 1.09003 * 109.46842 * 305.03858 * 1 2 3 27 27 H 1.09006 * 109.47502 * 65.03118 * 1 2 3 28 28 H 0.96703 * 113.99738 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47164 * 298.17753 * 4 2 1 30 30 H 1.08997 * 109.47291 * 58.17221 * 4 2 1 31 31 H 1.08998 * 109.58742 * 246.15655 * 8 7 5 32 32 H 1.08997 * 109.58586 * 6.58292 * 8 7 5 33 33 H 1.08993 * 109.49829 * 174.59054 * 9 8 7 34 34 H 1.08999 * 109.49501 * 294.68324 * 9 8 7 35 35 H 1.09005 * 109.46334 * 58.65552 * 10 9 8 36 36 H 1.09006 * 109.45975 * 178.61448 * 10 9 8 37 37 H 0.97004 * 120.00359 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.58667 * 353.41630 * 21 7 5 39 39 H 1.09001 * 109.58127 * 113.84324 * 21 7 5 40 40 H 1.08999 * 115.54601 * 205.58252 * 22 2 1 41 41 H 1.08996 * 117.49958 * 214.96979 * 23 22 2 42 42 H 1.09005 * 117.49654 * 359.97438 * 23 22 2 43 43 H 1.09003 * 117.49971 * 359.97438 * 24 22 2 44 44 H 1.08993 * 117.50034 * 144.97091 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5463 -0.7606 1.2267 6 8 4.1551 -0.1808 0.3526 7 7 4.2169 -1.4401 2.1780 8 6 3.4935 -2.1471 3.2436 9 6 3.9635 -3.6048 3.2754 10 6 5.4867 -3.6424 3.4180 11 6 6.1308 -2.9534 2.2127 12 1 5.8193 -3.4560 1.2970 13 6 7.6312 -3.0202 2.3377 14 1 8.2106 -2.1098 2.3791 15 6 8.2641 -4.2435 2.3990 16 7 7.5585 -5.3522 2.3489 17 14 10.1239 -4.3262 2.5532 18 1 10.5015 -4.3378 3.9893 19 1 10.6201 -5.5646 1.9009 20 1 10.7286 -3.1421 1.8919 21 6 5.6853 -1.4926 2.1659 22 6 2.0399 -0.7212 -1.2494 23 6 1.0110 -1.4560 -2.1109 24 6 1.6339 -0.1506 -2.6097 25 1 -0.3634 -1.0236 0.0902 26 1 -0.3633 0.5900 0.8414 27 1 -0.3634 0.4338 -0.9316 28 1 2.9703 1.4236 -0.0004 29 1 1.7036 -0.1891 2.1389 30 1 1.6502 -1.7391 1.2656 31 1 3.7031 -1.6746 4.2032 32 1 2.4227 -2.1127 3.0432 33 1 3.5061 -4.1161 4.1223 34 1 3.6723 -4.1012 2.3497 35 1 5.7789 -3.1242 4.3314 36 1 5.8216 -4.6787 3.4656 37 1 8.0037 -6.2129 2.3924 38 1 6.0601 -1.0266 1.2547 39 1 6.0768 -0.9657 3.0361 40 1 3.0329 -1.1628 -1.1649 41 1 1.3270 -2.3809 -2.5933 42 1 -0.0296 -1.4260 -1.7875 43 1 1.0032 0.7385 -2.6146 44 1 2.3599 -0.2163 -3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -73.787579 kcal Electronic energy + Delta-G solvation = -23376.407866 eV Core-core repulsion = 20100.966898 eV Total energy + Delta-G solvation = -3275.440968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34167 -38.55197 -36.71687 -35.19135 -33.61886 -31.88498 -31.27672 -30.29378 -28.11130 -25.14109 -24.63253 -23.31882 -22.26497 -21.74273 -20.21212 -19.42645 -18.34011 -17.01841 -16.70369 -16.25833 -15.93094 -15.33834 -15.02425 -14.63585 -14.06549 -13.67007 -13.55547 -13.20396 -12.97964 -12.82537 -12.48066 -12.43419 -12.32571 -12.10711 -12.01618 -11.77185 -11.27566 -11.02823 -10.91377 -10.86659 -10.74280 -10.44856 -10.33589 -10.05562 -10.00456 -9.83146 -9.69735 -9.50663 -9.29283 -8.86919 -8.42912 -7.97371 -6.05940 -4.13288 2.93076 3.27019 3.34068 3.37105 3.46930 3.81351 4.39092 4.41876 4.58093 4.73051 4.77316 5.05138 5.12795 5.21281 5.24020 5.29010 5.44210 5.52488 5.57699 5.61222 5.68067 5.73010 5.81703 5.90468 5.99778 6.06119 6.13138 6.16927 6.27530 6.33451 6.42791 6.43797 6.60844 6.74704 6.89964 7.10588 7.27777 7.64526 7.82103 7.89754 7.97974 8.03353 8.32612 8.55832 8.90350 9.52030 10.99574 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.004244 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.011633 B = 6595.885316 C = 6888.325808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.181 3.819 3 O -0.564 6.564 4 C -0.167 4.167 5 C 0.512 3.488 6 O -0.554 6.554 7 N -0.599 5.599 8 C 0.107 3.893 9 C -0.135 4.135 10 C -0.113 4.113 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.515 4.515 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.116 3.884 22 C -0.178 4.178 23 C -0.187 4.187 24 C -0.166 4.166 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.389 0.611 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 6.179 -1.436 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.140 3.860 3 O -0.376 6.376 4 C -0.208 4.208 5 C 0.301 3.699 6 O -0.436 6.436 7 N -0.330 5.330 8 C -0.016 4.016 9 C -0.173 4.173 10 C -0.151 4.151 11 C 0.021 3.979 12 H 0.046 0.954 13 C -0.553 4.553 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.005 4.005 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.203 4.203 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.242 0.758 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.877 6.412 -1.870 16.307 hybrid contribution 1.670 -0.508 0.263 1.765 sum -13.207 5.904 -1.607 14.555 Atomic orbital electron populations 1.21872 0.92939 1.02158 1.02890 1.20216 0.93352 0.82075 0.90372 1.86350 1.29358 1.25047 1.96796 1.22460 0.93714 1.03517 1.01069 1.20482 0.89528 0.78698 0.81204 1.90541 1.70114 1.46412 1.36485 1.48336 1.08690 1.49408 1.26565 1.21787 0.95395 0.94015 0.90400 1.22006 1.00297 0.93932 1.01110 1.21640 0.89924 1.04939 0.98607 1.18895 0.95211 0.88754 0.95043 0.95371 1.21066 0.91120 0.92489 1.50650 0.92480 1.24929 0.98235 0.95684 0.94907 1.69868 1.35125 0.97405 1.50377 0.86578 0.85594 0.77586 0.78169 1.20662 1.21220 1.19835 1.21938 0.75922 1.01003 1.01630 1.23200 1.00567 1.03815 0.92014 1.23120 0.98525 0.96231 1.04508 1.22769 1.03481 0.96959 0.97060 0.90963 0.91849 0.91628 0.75791 0.88380 0.88281 0.91781 0.91047 0.92388 0.92372 0.94565 0.88590 0.92951 0.90210 0.92688 0.86374 0.89085 0.88405 0.88816 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.44 37.16 0.28 -1.16 16 2 C 0.18 2.33 0.92 -90.62 -0.08 2.25 16 3 O -0.56 -8.39 12.87 -53.68 -0.69 -9.08 16 4 C -0.17 -2.12 3.40 -27.89 -0.09 -2.22 16 5 C 0.51 8.58 6.97 -10.99 -0.08 8.50 16 6 O -0.55 -10.66 11.53 -12.89 -0.15 -10.80 16 7 N -0.60 -10.54 2.98 -173.01 -0.52 -11.05 16 8 C 0.11 1.58 6.35 -3.71 -0.02 1.56 16 9 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 10 C -0.11 -2.47 4.96 -26.69 -0.13 -2.61 16 11 C 0.04 0.96 2.24 -91.85 -0.21 0.76 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.51 -13.74 8.57 -34.44 -0.30 -14.04 16 14 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -24.65 11.31 55.43 0.63 -24.03 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.44 5.63 -3.91 -0.02 2.41 16 22 C -0.18 -2.43 4.70 -90.62 -0.43 -2.86 16 23 C -0.19 -2.10 9.57 -26.73 -0.26 -2.36 16 24 C -0.17 -2.02 9.78 -26.73 -0.26 -2.28 16 25 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.65 6.71 -51.93 -0.35 0.31 16 28 H 0.39 6.09 6.52 45.56 0.30 6.39 16 29 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 30 H 0.10 1.11 7.43 -51.93 -0.39 0.73 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.83 5.89 -51.93 -0.31 0.52 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.40 6.04 -51.93 -0.31 2.08 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.80 7.01 -51.93 -0.36 1.43 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.12 1.98 6.10 -51.93 -0.32 1.66 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 0.93 5.89 -51.93 -0.31 0.63 16 43 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -28.73 335.35 -9.13 -37.87 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.58 Total: 9.05 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.86 Total: -12.88 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.11 Total: -35.08 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.84 Total: -19.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.73 -9.13 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.920 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds