Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 5 5 C 1.50701 * 109.46986 * 60.00188 * 4 2 1 6 6 O 1.21276 * 119.99872 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99733 * 180.02562 * 5 4 2 8 8 C 1.46930 * 120.63181 * 359.70985 * 7 5 4 9 9 C 1.52760 * 109.01073 * 233.59012 * 8 7 5 10 10 C 1.53042 * 109.38252 * 305.58698 * 9 8 7 11 11 C 1.53042 * 109.53670 * 61.24174 * 10 9 8 12 12 H 1.08995 * 109.49911 * 58.58437 * 11 10 9 13 13 C 1.50700 * 109.49927 * 178.68431 * 11 10 9 14 14 H 1.07999 * 120.00300 * 119.83828 * 13 11 10 15 15 C 1.37884 * 119.99835 * 299.83830 * 13 11 10 16 16 N 1.31509 * 120.00035 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99749 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47137 * 90.00086 * 17 15 13 19 19 H 1.48507 * 109.47097 * 210.00102 * 17 15 13 20 20 H 1.48503 * 109.47336 * 330.00245 * 17 15 13 21 21 C 1.46927 * 120.63019 * 179.97438 * 7 5 4 22 22 C 1.53003 * 109.47142 * 119.99282 * 2 1 3 23 23 C 1.53001 * 117.49590 * 13.62452 * 22 2 1 24 24 C 1.53001 * 60.00026 * 252.50665 * 23 22 2 25 25 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 26 26 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 28 28 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47164 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47124 * 299.99757 * 4 2 1 31 31 H 1.08997 * 109.58911 * 353.42593 * 8 7 5 32 32 H 1.09003 * 109.58141 * 113.85104 * 8 7 5 33 33 H 1.09002 * 109.56433 * 185.55698 * 9 8 7 34 34 H 1.08994 * 109.38718 * 65.51221 * 9 8 7 35 35 H 1.09007 * 109.46311 * 301.22345 * 10 9 8 36 36 H 1.08997 * 109.45236 * 181.25635 * 10 9 8 37 37 H 0.96997 * 120.00072 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.58425 * 246.15193 * 21 7 5 39 39 H 1.09002 * 109.58644 * 6.43111 * 21 7 5 40 40 H 1.08995 * 115.55055 * 159.33140 * 22 2 1 41 41 H 1.09002 * 117.49999 * 0.02562 * 23 22 2 42 42 H 1.09000 * 117.49279 * 145.01624 * 23 22 2 43 43 H 1.08997 * 117.50020 * 252.50963 * 24 23 22 44 44 H 1.09001 * 117.51445 * 107.48018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8630 -0.4717 -3.7037 8 6 2.7115 -1.6617 -3.8545 9 6 3.8924 -1.3192 -4.7611 10 6 3.3701 -0.7478 -6.0813 11 6 2.5813 0.5348 -5.8074 12 1 3.2245 1.2573 -5.3051 13 6 2.0948 1.1141 -7.1108 14 1 1.0362 1.2387 -7.2847 15 6 3.0013 1.4852 -8.0812 16 7 2.5769 1.9913 -9.2184 17 14 4.8323 1.2704 -7.7800 18 1 5.2568 -0.0732 -8.2489 19 1 5.5822 2.3141 -8.5241 20 1 5.1136 1.3995 -6.3276 21 6 1.3805 0.2097 -4.9127 22 6 2.0400 -0.7211 1.2494 23 6 1.0319 -1.5507 2.0471 24 6 1.5415 -0.2210 2.6067 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.9703 1.4237 -0.0004 29 1 3.1300 -0.7217 -1.2489 30 1 1.6768 -1.7490 -1.2491 31 1 3.0811 -1.9732 -2.8776 32 1 2.1324 -2.4690 -4.3029 33 1 4.4737 -2.2197 -4.9592 34 1 4.5237 -0.5794 -4.2690 35 1 2.7194 -1.4788 -6.5613 36 1 4.2109 -0.5237 -6.7377 37 1 3.2145 2.2520 -9.9013 38 1 0.6907 -0.4422 -5.4489 39 1 0.8698 1.1313 -4.6335 40 1 3.0641 -1.0900 1.1941 41 1 0.0055 -1.5831 1.6817 42 1 1.3928 -2.4657 2.5167 43 1 2.2377 -0.2613 3.4445 44 1 0.8506 0.6220 2.6096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = -82.424758 kcal Electronic energy + Delta-G solvation = -23282.501341 eV Core-core repulsion = 20006.685837 eV Total energy + Delta-G solvation = -3275.815504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44241 -39.85034 -38.31312 -36.28702 -35.34848 -33.58537 -32.74878 -32.00207 -29.18787 -26.99102 -26.31067 -24.64056 -23.19681 -23.16270 -21.60990 -20.54736 -19.82667 -18.83201 -18.23077 -17.65248 -17.00214 -16.71683 -16.40598 -15.99884 -15.49879 -15.39176 -15.10078 -14.89727 -14.57194 -14.10778 -14.07883 -13.90666 -13.78239 -13.30721 -13.03115 -12.88501 -12.71347 -12.59520 -12.43295 -12.09401 -12.01451 -11.90007 -11.74198 -11.49736 -11.36458 -11.25075 -11.07191 -11.01839 -10.79153 -10.69541 -10.36435 -9.45678 -8.33126 -6.38439 1.26522 1.34617 1.44976 1.77867 2.12889 2.30033 2.84326 3.01789 3.45778 3.62564 3.65883 3.95988 4.00158 4.06993 4.09095 4.19887 4.22774 4.32060 4.35201 4.42058 4.55399 4.59381 4.67425 4.76757 4.81124 4.86449 4.91315 4.97149 4.98361 5.03907 5.07681 5.14669 5.14808 5.30526 5.33405 5.39218 5.44386 5.52432 5.66144 5.77176 6.24807 6.62872 6.68356 6.98023 7.26795 7.37391 8.83867 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032876 B = 0.004101 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.469867 B = 6826.392127 C = 7023.710238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 O -0.567 6.567 4 C -0.154 4.154 5 C 0.502 3.498 6 O -0.572 6.572 7 N -0.615 5.615 8 C 0.108 3.892 9 C -0.134 4.134 10 C -0.122 4.122 11 C 0.009 3.991 12 H 0.012 0.988 13 C -0.525 4.525 14 H 0.030 0.970 15 C 0.011 3.989 16 N -0.950 5.950 17 Si 0.958 3.042 18 H -0.256 1.256 19 H -0.301 1.301 20 H -0.252 1.252 21 C 0.140 3.860 22 C -0.184 4.184 23 C -0.169 4.169 24 C -0.174 4.174 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.380 0.620 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -14.270 23.061 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.137 3.863 3 O -0.373 6.373 4 C -0.193 4.193 5 C 0.292 3.708 6 O -0.452 6.452 7 N -0.348 5.348 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.159 4.159 11 C -0.010 4.010 12 H 0.030 0.970 13 C -0.563 4.563 14 H 0.049 0.951 15 C -0.186 4.186 16 N -0.590 5.590 17 Si 0.784 3.216 18 H -0.181 1.181 19 H -0.229 1.229 20 H -0.176 1.176 21 C 0.017 3.983 22 C -0.202 4.202 23 C -0.206 4.206 24 C -0.211 4.211 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.228 0.772 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.535 -13.576 22.967 26.912 hybrid contribution 0.907 0.674 -0.999 1.508 sum 4.442 -12.902 21.968 25.861 Atomic orbital electron populations 1.22082 0.94019 1.02488 1.02591 1.20363 0.94141 0.81221 0.90622 1.86699 1.26970 1.26731 1.96905 1.22474 1.04123 1.01972 0.90775 1.21314 0.80044 0.84313 0.85175 1.90660 1.39830 1.28169 1.86503 1.48429 1.51050 1.29972 1.05301 1.21924 0.91092 0.86166 1.02210 1.21924 0.98034 1.02099 0.95127 1.21859 0.98766 0.97851 0.97468 1.19335 0.94160 0.94136 0.93387 0.97007 1.21263 0.93625 1.41324 1.00086 0.95146 1.25917 1.04243 0.94048 0.94368 1.70054 1.36677 1.44566 1.07680 0.85714 0.79154 0.77629 0.79100 1.18102 1.22950 1.17623 1.21227 0.96269 0.96263 0.84581 1.22957 1.00564 1.04774 0.91897 1.23196 0.99304 0.95315 1.02763 1.22881 1.03992 0.98008 0.96244 0.92660 0.89655 0.92755 0.77238 0.86020 0.85281 0.86004 0.89984 0.87787 0.92364 0.91934 0.94579 0.92449 0.92497 0.93130 0.85558 0.88328 0.86954 0.87620 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 7.18 71.98 0.52 -3.25 16 2 C 0.18 3.68 0.80 -10.79 -0.01 3.67 16 3 O -0.57 -15.05 11.85 -131.53 -1.56 -16.61 16 4 C -0.15 -2.88 3.30 29.85 0.10 -2.78 16 5 C 0.50 15.77 7.26 87.66 0.64 16.41 16 6 O -0.57 -23.85 12.37 14.43 0.18 -23.67 16 7 N -0.61 -19.68 2.98 -819.64 -2.44 -22.12 16 8 C 0.11 2.36 6.31 86.22 0.54 2.90 16 9 C -0.13 -3.49 6.06 30.53 0.19 -3.30 16 10 C -0.12 -4.67 4.66 30.62 0.14 -4.53 16 11 C 0.01 0.44 1.84 -11.45 -0.02 0.42 16 12 H 0.01 0.59 7.19 -2.39 -0.02 0.58 16 13 C -0.52 -30.67 9.14 25.60 0.23 -30.44 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 15 C 0.01 0.67 5.45 84.66 0.46 1.13 16 16 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 17 Si 0.96 45.18 24.39 68.60 1.67 46.85 16 18 H -0.26 -11.04 6.86 99.48 0.68 -10.36 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 20 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 21 C 0.14 5.95 5.66 86.38 0.49 6.44 16 22 C -0.18 -2.55 5.32 -10.79 -0.06 -2.60 16 23 C -0.17 -2.03 9.65 30.59 0.30 -1.74 16 24 C -0.17 -2.53 9.85 30.60 0.30 -2.23 16 25 H 0.05 1.83 5.51 -2.39 -0.01 1.81 16 26 H 0.08 1.61 6.74 -2.39 -0.02 1.59 16 27 H 0.05 1.30 6.96 -2.39 -0.02 1.29 16 28 H 0.38 7.22 9.05 -74.06 -0.67 6.55 16 29 H 0.12 1.60 7.68 -2.39 -0.02 1.58 16 30 H 0.13 1.66 7.95 -2.39 -0.02 1.64 16 31 H 0.12 1.57 5.93 -2.39 -0.01 1.56 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.04 1.48 3.27 -2.39 -0.01 1.47 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.06 2.40 8.14 -2.38 -0.02 2.39 16 39 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 40 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.27 5.89 -2.39 -0.01 1.26 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.46 7.29 -2.39 -0.02 1.44 16 Total: -1.00 -78.90 330.45 2.22 -76.68 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.25 Total: 18.88 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.82 Total: -19.91 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.14 Total: -82.23 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.38 Total: -40.28 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -78.90 2.22 -76.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.746 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds