Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47389 * 2 1 4 4 C 1.53000 * 109.47235 * 239.99663 * 2 1 3 5 5 C 1.50703 * 109.46665 * 60.00311 * 4 2 1 6 6 O 1.21276 * 120.00313 * 359.97438 * 5 4 2 7 7 N 1.34787 * 119.99759 * 179.97438 * 5 4 2 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 4 9 9 C 1.53187 * 108.77642 * 126.66473 * 8 7 5 10 10 C 1.53041 * 109.31211 * 54.63373 * 9 8 7 11 11 C 1.53038 * 109.53768 * 298.63806 * 10 9 8 12 12 H 1.08999 * 109.49677 * 301.40907 * 11 10 9 13 13 C 1.50707 * 109.52149 * 181.33237 * 11 10 9 14 14 H 1.08000 * 119.99571 * 240.14401 * 13 11 10 15 15 C 1.37873 * 120.00168 * 60.14479 * 13 11 10 16 16 N 1.31519 * 119.99804 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00210 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46767 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46886 * 119.99592 * 17 15 13 20 20 H 1.48502 * 109.47125 * 239.99874 * 17 15 13 21 21 C 1.46926 * 120.62918 * 180.02562 * 7 5 4 22 22 C 1.53003 * 109.46719 * 120.00206 * 2 1 3 23 23 C 1.53001 * 117.50200 * 13.74244 * 22 2 1 24 24 C 1.52999 * 117.49925 * 305.08060 * 22 2 1 25 25 H 1.08998 * 109.47425 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47131 * 300.00583 * 1 2 3 27 27 H 1.09002 * 109.46591 * 59.99855 * 1 2 3 28 28 H 0.96698 * 114.00179 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47231 * 300.00507 * 4 2 1 30 30 H 1.09001 * 109.47359 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.58516 * 246.45674 * 8 7 5 32 32 H 1.09002 * 109.58479 * 6.87832 * 8 7 5 33 33 H 1.08999 * 109.49975 * 294.68379 * 9 8 7 34 34 H 1.08998 * 109.50042 * 174.58459 * 9 8 7 35 35 H 1.09003 * 109.46022 * 178.61192 * 10 9 8 36 36 H 1.09007 * 109.44471 * 58.64946 * 10 9 8 37 37 H 0.97003 * 119.99699 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.58798 * 353.11768 * 21 7 5 39 39 H 1.08996 * 109.58781 * 113.40238 * 21 7 5 40 40 H 1.09001 * 115.55058 * 159.42061 * 22 2 1 41 41 H 1.09002 * 117.49398 * 0.02562 * 23 22 2 42 42 H 1.09000 * 117.49622 * 145.02051 * 23 22 2 43 43 H 1.09000 * 117.50405 * 214.98222 * 24 22 2 44 44 H 1.09007 * 117.49778 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 8 0.8402 0.9749 -2.3684 7 7 1.8638 -0.4711 -3.7038 8 6 2.7130 -1.6605 -3.8547 9 6 1.9984 -2.6644 -4.7648 10 6 1.6339 -1.9807 -6.0846 11 6 0.6820 -0.8141 -5.8109 12 1 -0.2132 -1.1844 -5.3114 13 6 0.2975 -0.1615 -7.1138 14 1 0.5285 0.8795 -7.2852 15 6 -0.3491 -0.8935 -8.0870 16 7 -0.6299 -2.1613 -7.8785 17 14 -0.8263 -0.0845 -9.7017 18 1 -0.4016 1.3384 -9.6869 19 1 -0.1580 -0.7893 -10.8250 20 1 -2.2991 -0.1592 -9.8765 21 6 1.3822 0.2111 -4.9127 22 6 2.0399 -0.7213 1.2493 23 6 1.0325 -1.5533 2.0454 24 6 1.5400 -0.2226 2.6065 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 2.9704 1.4235 0.0004 29 1 1.6767 -1.7489 -1.2492 30 1 3.1301 -0.7217 -1.2490 31 1 3.6653 -1.3752 -4.3019 32 1 2.8864 -2.1119 -2.8778 33 1 1.0908 -3.0173 -4.2751 34 1 2.6577 -3.5094 -4.9627 35 1 1.1472 -2.6997 -6.7436 36 1 2.5397 -1.6062 -6.5615 37 1 -1.0845 -2.6763 -8.5633 38 1 0.6774 0.9945 -4.6340 39 1 2.2257 0.6508 -5.4448 40 1 3.0646 -1.0889 1.1946 41 1 0.0065 -1.5871 1.6789 42 1 1.3945 -2.4681 2.5147 43 1 2.2355 -0.2624 3.4448 44 1 0.8474 0.6192 2.6094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = -67.651459 kcal Electronic energy + Delta-G solvation = -23195.318976 eV Core-core repulsion = 19920.144090 eV Total energy + Delta-G solvation = -3275.174886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16054 -38.65706 -36.69284 -35.36414 -33.50512 -31.72289 -31.28231 -30.14652 -27.87580 -25.12581 -24.73722 -23.45267 -22.51755 -21.67486 -19.98696 -19.53149 -18.24863 -17.17146 -16.53355 -16.16393 -15.86970 -15.33957 -14.81330 -14.54322 -14.32844 -13.87299 -13.50273 -13.25046 -13.03419 -12.80120 -12.51741 -12.36446 -12.25513 -11.99044 -11.70652 -11.53747 -11.20077 -10.99556 -10.92588 -10.78870 -10.71630 -10.62189 -10.35860 -10.26356 -9.97296 -9.86413 -9.73781 -9.42199 -9.08346 -8.79147 -8.38762 -7.83710 -6.02251 -4.09073 3.12894 3.28730 3.36875 3.40762 3.46433 3.63864 4.38624 4.43194 4.44810 4.64868 4.83019 4.84990 5.01816 5.14680 5.22469 5.27410 5.36712 5.45874 5.57741 5.62612 5.66974 5.77244 5.78353 5.87748 5.95040 6.03750 6.09943 6.16417 6.33227 6.40939 6.48698 6.60667 6.68755 6.82636 7.01134 7.18034 7.33890 7.69256 7.79361 7.92497 8.06231 8.08078 8.38202 8.75561 8.95191 9.55933 11.03312 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032123 B = 0.003853 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.432982 B = 7265.826172 C = 7528.193880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 O -0.537 6.537 4 C -0.165 4.165 5 C 0.509 3.491 6 O -0.529 6.529 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.118 3.882 22 C -0.188 4.188 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.366 0.634 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -2.028 16.564 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 O -0.340 6.340 4 C -0.205 4.205 5 C 0.296 3.704 6 O -0.406 6.406 7 N -0.340 5.340 8 C -0.014 4.014 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.003 4.003 22 C -0.206 4.206 23 C -0.215 4.215 24 C -0.203 4.203 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.211 0.789 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.906 -1.514 16.522 17.972 hybrid contribution 0.574 -0.119 -0.963 1.127 sum 7.480 -1.633 15.559 17.341 Atomic orbital electron populations 1.22108 0.92417 1.01928 1.04772 1.20276 0.95143 0.81471 0.89026 1.86719 1.25426 1.25156 1.96742 1.22416 1.02191 1.01579 0.94343 1.20278 0.81018 0.84861 0.84210 1.90638 1.37800 1.26319 1.85881 1.48332 1.50468 1.28758 1.06423 1.21716 0.93534 0.86386 0.99722 1.22000 0.99569 0.97026 0.98721 1.21625 0.98669 1.00401 0.94317 1.18976 0.93782 0.91469 0.93682 0.95310 1.21129 1.37419 0.96848 0.99744 0.92437 1.24940 0.95514 0.94865 0.98539 1.69887 1.41463 1.07258 1.34221 0.86526 0.78207 0.79672 0.83554 1.19712 1.21061 1.21023 1.21962 0.98259 0.96669 0.83404 1.23068 0.99331 1.04724 0.93516 1.23135 0.99795 0.94950 1.03611 1.22869 1.03745 0.98022 0.95659 0.91773 0.92493 0.88554 0.78867 0.88405 0.89348 0.92124 0.91330 0.92414 0.92556 0.88686 0.94635 0.93062 0.90342 0.92953 0.87906 0.87833 0.88953 0.89072 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 7.18 37.16 0.27 -1.89 16 2 C 0.18 2.26 0.80 -90.62 -0.07 2.18 16 3 O -0.54 -7.44 11.85 -53.48 -0.63 -8.08 16 4 C -0.16 -2.07 3.30 -27.88 -0.09 -2.16 16 5 C 0.51 8.96 7.26 -10.98 -0.08 8.88 16 6 O -0.53 -11.20 12.37 -12.69 -0.16 -11.36 16 7 N -0.61 -11.09 2.97 -172.75 -0.51 -11.60 16 8 C 0.11 1.66 6.34 -3.71 -0.02 1.64 16 9 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 10 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 11 C 0.04 0.98 2.25 -91.63 -0.21 0.78 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.94 11.32 55.43 0.63 -24.32 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.12 2.57 5.66 -3.69 -0.02 2.55 16 22 C -0.19 -1.80 5.32 -90.62 -0.48 -2.28 16 23 C -0.18 -1.57 9.66 -26.69 -0.26 -1.83 16 24 C -0.17 -1.51 9.86 -26.69 -0.26 -1.78 16 25 H 0.06 0.78 6.74 -51.93 -0.35 0.43 16 26 H 0.06 0.74 6.96 -51.93 -0.36 0.38 16 27 H 0.10 1.69 5.51 -51.93 -0.29 1.41 16 28 H 0.37 3.68 9.05 45.56 0.41 4.09 16 29 H 0.10 1.12 7.70 -51.93 -0.40 0.72 16 30 H 0.09 0.90 7.94 -51.93 -0.41 0.48 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 36 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 38 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.95 5.89 -51.93 -0.31 0.65 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.99 7.28 -51.92 -0.38 0.62 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -30.97 337.29 -8.94 -39.92 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.41 Total: 5.90 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.91 Total: -11.68 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.11 Total: -35.92 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.79 Total: -19.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.97 -8.94 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.735 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds