Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99795 * 2 1 4 4 O 1.42901 * 109.46671 * 135.00182 * 3 2 1 5 5 C 1.42905 * 113.99526 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46900 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47351 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47497 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99508 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.62932 * 359.97291 * 10 8 7 12 12 C 1.53187 * 108.77625 * 126.41524 * 11 10 8 13 13 C 1.53046 * 109.31363 * 54.63376 * 12 11 10 14 14 C 1.53046 * 109.53579 * 298.63645 * 13 12 11 15 15 H 1.08995 * 109.49499 * 301.40973 * 14 13 12 16 16 C 1.50700 * 109.49623 * 181.31259 * 14 13 12 17 17 H 1.07996 * 120.00534 * 240.00313 * 16 14 13 18 18 C 1.37878 * 119.99817 * 59.99951 * 16 14 13 19 19 N 1.31514 * 120.00036 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00058 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47162 * 60.00019 * 20 18 16 22 22 H 1.48499 * 109.47439 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47051 * 299.99823 * 20 18 16 24 24 C 1.46921 * 120.63131 * 179.97438 * 10 8 7 25 25 H 1.08000 * 119.99761 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99907 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.99907 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47184 * 15.00319 * 3 2 1 29 29 H 1.09002 * 109.47161 * 255.00335 * 3 2 1 30 30 H 1.08996 * 109.47131 * 60.00519 * 5 4 3 31 31 H 1.08997 * 109.46972 * 299.99639 * 5 4 3 32 32 H 1.09003 * 109.47401 * 60.00110 * 6 5 4 33 33 H 1.08995 * 109.47279 * 300.00363 * 6 5 4 34 34 H 1.09001 * 109.47130 * 60.00090 * 7 6 5 35 35 H 1.09003 * 109.47096 * 300.00170 * 7 6 5 36 36 H 1.09000 * 109.58351 * 246.20638 * 11 10 8 37 37 H 1.09002 * 109.58642 * 6.48295 * 11 10 8 38 38 H 1.09001 * 109.49833 * 294.68424 * 12 11 10 39 39 H 1.08996 * 109.49835 * 174.58430 * 12 11 10 40 40 H 1.08993 * 109.46296 * 178.61734 * 13 12 11 41 41 H 1.09000 * 109.45696 * 58.65290 * 13 12 11 42 42 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.58905 * 113.79723 * 24 10 8 44 44 H 1.09008 * 109.58585 * 353.36923 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4353 1.0329 6 6 5.0099 2.2545 2.0786 7 6 5.8465 3.5326 2.1640 8 6 6.9325 3.3544 3.1936 9 8 7.0276 2.3081 3.7996 10 7 7.7973 4.3579 3.4415 11 6 7.6945 5.6312 2.7158 12 6 7.6226 6.7742 3.7332 13 6 8.8218 6.6854 4.6799 14 6 8.7763 5.3580 5.4404 15 1 7.8423 5.2902 5.9981 16 6 9.9397 5.2855 6.3956 17 1 10.6658 4.4914 6.3030 18 6 10.0771 6.2329 7.3878 19 7 9.1926 7.1997 7.5009 20 14 11.5195 6.1435 8.5713 21 1 12.7910 6.2345 7.8098 22 1 11.4384 7.2690 9.5366 23 1 11.4753 4.8553 9.3090 24 6 8.8609 4.1992 4.4426 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2660 29 1 2.4755 1.4869 -0.9927 30 1 3.2678 3.2694 1.3206 31 1 4.3579 2.6408 0.0617 32 1 5.6500 1.4203 1.7913 33 1 4.5593 2.0491 3.0495 34 1 5.2067 4.3672 2.4511 35 1 6.2971 3.7376 1.1929 36 1 8.5708 5.7617 2.0808 37 1 6.7946 5.6296 2.1007 38 1 6.6994 6.6930 4.3070 39 1 7.6429 7.7296 3.2091 40 1 8.7863 7.5118 5.3895 41 1 9.7448 6.7417 4.1028 42 1 9.2891 7.8660 8.1992 43 1 9.8325 4.2128 3.9488 44 1 8.7293 3.2537 4.9689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -81.397070 kcal Electronic energy + Delta-G solvation = -21769.366953 eV Core-core repulsion = 18493.596013 eV Total energy + Delta-G solvation = -3275.770940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68856 -38.37019 -36.83442 -34.60472 -33.56648 -33.03362 -31.32968 -30.26124 -27.66916 -25.81403 -25.04882 -24.16144 -21.98690 -21.60985 -20.22816 -19.69411 -18.26474 -17.04175 -16.76334 -16.55367 -16.14496 -15.58746 -15.16126 -15.03238 -14.54654 -14.16988 -13.67012 -13.49519 -13.22778 -12.94942 -12.77136 -12.51184 -12.45877 -12.06916 -11.89153 -11.88025 -11.36804 -11.14623 -10.98064 -10.94038 -10.83061 -10.75159 -10.31404 -10.09829 -9.96337 -9.81223 -9.60934 -9.47803 -9.26535 -8.83675 -8.38838 -7.89212 -6.02288 -4.09392 1.81228 3.06512 3.31356 3.33748 3.35732 3.39833 3.73774 4.42359 4.59251 4.76159 4.79151 4.87584 5.02838 5.08560 5.16142 5.21469 5.27352 5.32559 5.33322 5.39796 5.51935 5.60728 5.62184 5.77571 6.08675 6.10457 6.21222 6.24956 6.31684 6.32209 6.39937 6.47680 6.66037 6.80662 6.97500 6.99877 7.16038 7.32622 7.68384 7.91355 8.02355 8.07037 8.37185 8.66550 8.94116 9.55419 11.03199 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037393 B = 0.002655 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.618805 B =10545.573530 C =10815.639407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.383 6.383 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.508 3.492 9 O -0.550 6.550 10 N -0.605 5.605 11 C 0.109 3.891 12 C -0.135 4.135 13 C -0.113 4.113 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 -4.760 -16.694 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.013 4.013 6 C -0.141 4.141 7 C -0.176 4.176 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.005 4.005 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.509 -5.305 -16.144 21.101 hybrid contribution 0.718 0.457 0.442 0.960 sum -11.791 -4.847 -15.701 20.225 Atomic orbital electron populations 1.23839 0.95570 1.02262 1.00301 1.22777 0.95662 0.98335 1.00030 1.21530 0.89063 0.95792 0.92518 1.87932 1.44545 1.37424 1.60379 1.22552 0.92888 0.86994 0.98908 1.21215 0.95685 0.97546 0.99616 1.21557 0.97013 0.99633 0.99425 1.20429 0.82537 0.83672 0.83782 1.90675 1.73312 1.27406 1.51486 1.48320 1.31668 1.13558 1.40137 1.21745 1.00996 0.84172 0.94500 1.22004 1.01649 0.95928 0.97765 1.21633 0.93356 1.03201 0.96879 1.18960 0.97851 0.89369 0.91723 0.95310 1.21043 1.09528 1.11392 1.13323 0.92524 1.24942 0.96273 0.95327 0.97318 1.69861 1.35139 1.14554 1.33267 0.86630 0.82817 0.77603 0.80795 1.20260 1.21321 1.20211 1.21985 0.87286 1.01959 0.89239 0.87803 0.88440 0.86536 0.92825 0.92412 0.93208 0.93276 0.90364 0.90232 0.88964 0.89183 0.91965 0.91126 0.92377 0.92474 0.88622 0.94595 0.92925 0.92761 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.31 29.01 0.42 -0.83 16 2 C -0.15 -1.25 9.89 -36.03 -0.36 -1.60 16 3 C 0.09 0.76 6.35 36.01 0.23 0.99 16 4 O -0.38 -4.52 10.33 -35.23 -0.36 -4.88 16 5 C 0.06 0.64 5.94 37.16 0.22 0.86 16 6 C -0.10 -1.29 4.87 -26.73 -0.13 -1.42 16 7 C -0.14 -1.67 4.05 -27.88 -0.11 -1.79 16 8 C 0.51 9.04 7.70 -10.99 -0.08 8.95 16 9 O -0.55 -11.94 15.40 5.55 0.09 -11.86 16 10 N -0.60 -11.07 2.97 -172.79 -0.51 -11.59 16 11 C 0.11 1.63 6.34 -3.71 -0.02 1.60 16 12 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 13 C -0.11 -2.50 4.96 -26.68 -0.13 -2.63 16 14 C 0.04 0.99 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -13.96 8.56 -34.44 -0.29 -14.26 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.96 11.31 55.43 0.63 -24.33 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.12 2.53 5.65 -3.73 -0.02 2.51 16 25 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 26 H 0.10 0.58 7.90 -52.49 -0.41 0.16 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.05 0.41 7.86 -51.93 -0.41 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 35 H 0.09 0.89 7.94 -51.93 -0.41 0.47 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.86 7.01 -51.92 -0.36 1.50 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -31.04 355.14 -8.24 -39.28 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.65 Total: -0.39 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.75 Total: -7.72 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.11 Total: -35.92 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.28 Total: -16.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.04 -8.24 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.119 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds