Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 O 1.42896 * 109.47385 * 135.00067 * 3 2 1 5 5 C 1.42900 * 114.00244 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47319 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47228 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47291 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00198 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.62810 * 359.72283 * 10 8 7 12 12 C 1.52763 * 109.00352 * 233.58157 * 11 10 8 13 13 C 1.53042 * 109.38233 * 305.58612 * 12 11 10 14 14 C 1.53037 * 109.53621 * 61.24674 * 13 12 11 15 15 H 1.09004 * 109.50034 * 58.58130 * 14 13 12 16 16 C 1.50703 * 109.52441 * 178.66608 * 14 13 12 17 17 H 1.07994 * 120.00458 * 119.85354 * 16 14 13 18 18 C 1.37876 * 119.99698 * 299.84984 * 16 14 13 19 19 N 1.31519 * 120.00096 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 120.00056 * 0.02562 * 18 16 14 21 21 H 1.48497 * 109.47514 * 90.00040 * 20 18 16 22 22 H 1.48506 * 109.47256 * 210.00189 * 20 18 16 23 23 H 1.48501 * 109.47218 * 329.99780 * 20 18 16 24 24 C 1.46921 * 120.63106 * 179.97438 * 10 8 7 25 25 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 27 27 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46916 * 255.00433 * 3 2 1 29 29 H 1.09005 * 109.46734 * 14.99511 * 3 2 1 30 30 H 1.08995 * 109.46951 * 299.99938 * 5 4 3 31 31 H 1.09003 * 109.46817 * 59.99963 * 5 4 3 32 32 H 1.09000 * 109.46745 * 299.99966 * 6 5 4 33 33 H 1.09005 * 109.46675 * 59.99625 * 6 5 4 34 34 H 1.08995 * 109.47108 * 300.00178 * 7 6 5 35 35 H 1.08997 * 109.47170 * 60.00360 * 7 6 5 36 36 H 1.08992 * 109.58477 * 353.41439 * 11 10 8 37 37 H 1.09004 * 109.58232 * 113.84324 * 11 10 8 38 38 H 1.08997 * 109.56061 * 185.55746 * 12 11 10 39 39 H 1.09000 * 109.36117 * 65.50036 * 12 11 10 40 40 H 1.08992 * 109.46484 * 301.22112 * 13 12 11 41 41 H 1.09005 * 109.45818 * 181.26058 * 13 12 11 42 42 H 0.96996 * 119.99815 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.59073 * 246.15878 * 24 10 8 44 44 H 1.09000 * 109.58514 * 6.58690 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9077 2.4354 1.0328 6 6 5.0099 2.2547 2.0785 7 6 5.8464 3.5328 2.1639 8 6 6.9324 3.3546 3.1934 9 8 7.0282 2.3081 3.7989 10 7 7.7979 4.3577 3.4406 11 6 7.6990 5.6287 2.7101 12 6 9.0538 5.9470 2.0800 13 6 10.1350 5.9265 3.1629 14 6 10.2069 4.5314 3.7878 15 1 10.4265 3.7966 3.0132 16 6 11.2938 4.5024 4.8313 17 1 11.0510 4.2703 5.8577 18 6 12.5983 4.7720 4.4756 19 7 13.5470 4.7462 5.3861 20 14 13.0183 5.1740 2.7003 21 1 12.9189 6.6404 2.4879 22 1 14.4023 4.7238 2.4048 23 1 12.0677 4.4774 1.7968 24 6 8.8615 4.1992 4.4417 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0044 27 1 1.8501 -0.9353 -0.0004 28 1 2.4755 1.4868 -0.9927 29 1 1.3854 2.1161 0.2659 30 1 4.3579 2.6409 0.0617 31 1 3.2677 3.2695 1.3205 32 1 4.5592 2.0494 3.0495 33 1 5.6499 1.4204 1.7912 34 1 6.2969 3.7377 1.1928 35 1 5.2066 4.3673 2.4509 36 1 6.9449 5.5429 1.9279 37 1 7.4236 6.4263 3.4002 38 1 9.0191 6.9343 1.6193 39 1 9.2842 5.1989 1.3215 40 1 9.8910 6.6575 3.9336 41 1 11.0987 6.1754 2.7185 42 1 14.4647 4.9363 5.1358 43 1 8.6827 4.8780 5.2755 44 1 8.8741 3.1704 4.8015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -73.044362 kcal Electronic energy + Delta-G solvation = -21866.995638 eV Core-core repulsion = 18591.586898 eV Total energy + Delta-G solvation = -3275.408740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86478 -38.43633 -37.12165 -34.66334 -33.62479 -33.07647 -31.76931 -30.63131 -27.85640 -25.95861 -25.05688 -24.52834 -22.00303 -21.69785 -20.27766 -19.82738 -18.49236 -17.13103 -16.87480 -16.66826 -16.57436 -15.70975 -15.31124 -15.09082 -14.76918 -14.22862 -13.81843 -13.62121 -13.55583 -13.13440 -12.81723 -12.70137 -12.54206 -12.38090 -12.20150 -11.99538 -11.46830 -11.37447 -11.19274 -11.13836 -11.02331 -10.68639 -10.34093 -10.16914 -10.14513 -9.85331 -9.65367 -9.59353 -9.31071 -9.02219 -8.57891 -8.09677 -6.10725 -4.10783 1.77521 2.94085 3.22168 3.24059 3.34581 3.36771 3.63026 4.37120 4.53059 4.67228 4.73432 4.80649 4.97873 5.01317 5.03925 5.12646 5.19683 5.20716 5.23264 5.29597 5.32984 5.47722 5.49285 5.53792 5.85543 5.95941 6.00756 6.04630 6.17085 6.17891 6.20154 6.27325 6.34311 6.51737 6.66896 6.71739 6.84642 6.94659 7.12567 7.44661 7.71265 7.84247 8.45435 8.53831 8.92712 9.50713 11.02259 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.002804 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.535732 B = 9984.017896 C =10146.483166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.383 6.383 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.137 4.137 8 C 0.509 3.491 9 O -0.545 6.545 10 N -0.609 5.609 11 C 0.111 3.889 12 C -0.140 4.140 13 C -0.122 4.122 14 C 0.005 3.995 15 H 0.030 0.970 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.062 0.938 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.257 0.040 -12.999 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.013 4.013 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.423 6.423 10 N -0.342 5.342 11 C -0.012 4.012 12 C -0.178 4.178 13 C -0.160 4.160 14 C -0.015 4.015 15 H 0.048 0.952 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.006 3.994 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.971 -0.652 -12.508 25.290 hybrid contribution 0.447 0.720 -1.192 1.463 sum -21.524 0.069 -13.700 25.515 Atomic orbital electron populations 1.23837 0.95562 1.02260 1.00318 1.22780 0.95664 0.98349 1.00012 1.21531 0.89018 0.95790 0.92547 1.87931 1.44556 1.37391 1.60375 1.22543 0.92838 0.86982 0.98973 1.21219 0.95722 0.97595 0.99588 1.21564 0.96868 0.99653 0.99585 1.20447 0.82642 0.83482 0.83718 1.90693 1.73296 1.26927 1.51355 1.48351 1.31379 1.14133 1.40348 1.21600 0.97991 0.85968 0.95644 1.21939 0.95638 1.00967 0.99299 1.21986 0.96352 1.00967 0.96685 1.19478 0.92963 0.92410 0.96620 0.95220 1.20910 0.90533 1.48075 0.95723 0.90584 1.24995 0.96301 0.94738 0.97079 1.69895 1.00997 1.49295 1.33422 0.86818 0.76846 0.78313 0.86076 1.20608 1.22505 1.19134 1.21777 0.85650 1.02651 0.89327 0.87781 0.88462 0.86495 0.92374 0.92857 0.93227 0.93283 0.90259 0.90214 0.88984 0.89050 0.90637 0.91467 0.91694 0.92146 0.91913 0.93210 0.92597 0.91972 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 14.31 29.01 0.42 -0.76 16 2 C -0.15 -1.19 9.89 -36.03 -0.36 -1.55 16 3 C 0.09 0.73 6.35 36.01 0.23 0.96 16 4 O -0.38 -4.31 10.33 -35.23 -0.36 -4.68 16 5 C 0.06 0.60 5.94 37.16 0.22 0.82 16 6 C -0.10 -1.21 4.87 -26.74 -0.13 -1.35 16 7 C -0.14 -1.53 4.05 -27.88 -0.11 -1.64 16 8 C 0.51 8.46 7.70 -10.98 -0.08 8.37 16 9 O -0.54 -11.28 15.39 5.56 0.09 -11.19 16 10 N -0.61 -10.32 2.98 -173.00 -0.52 -10.83 16 11 C 0.11 1.47 6.31 -3.93 -0.02 1.45 16 12 C -0.14 -2.14 6.06 -26.83 -0.16 -2.31 16 13 C -0.12 -2.46 4.66 -26.69 -0.12 -2.58 16 14 C 0.00 0.11 1.84 -91.63 -0.17 -0.06 16 15 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 16 C -0.51 -14.24 9.15 -34.44 -0.31 -14.56 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 19 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 20 Si 0.89 21.72 24.39 -169.99 -4.15 17.58 16 21 H -0.28 -6.54 6.86 56.52 0.39 -6.16 16 22 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 24 C 0.13 2.62 5.66 -3.69 -0.02 2.60 16 25 H 0.10 0.54 8.06 -52.48 -0.42 0.12 16 26 H 0.10 0.53 7.90 -52.49 -0.41 0.11 16 27 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.38 7.86 -51.93 -0.41 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.09 0.87 7.68 -51.93 -0.40 0.47 16 35 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 36 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.09 1.95 7.00 -51.93 -0.36 1.58 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -32.86 348.33 -7.17 -40.03 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.52 Total: -0.93 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.73 Total: -8.69 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.26 Total: -37.36 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.28 Total: -15.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.15 Total: 17.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.86 -7.17 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.017 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds