Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 O 1.42896 * 109.47385 * 135.00067 * 3 2 1 5 5 C 1.42900 * 114.00244 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47319 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47228 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47291 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00198 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.62810 * 359.72283 * 10 8 7 12 12 C 1.52763 * 109.00352 * 233.58157 * 11 10 8 13 13 C 1.53042 * 109.38233 * 305.58612 * 12 11 10 14 14 C 1.53037 * 109.53621 * 61.24674 * 13 12 11 15 15 H 1.09004 * 109.50034 * 58.58130 * 14 13 12 16 16 C 1.50703 * 109.52441 * 178.66608 * 14 13 12 17 17 H 1.07994 * 120.00458 * 119.85354 * 16 14 13 18 18 C 1.37876 * 119.99698 * 299.84984 * 16 14 13 19 19 N 1.31519 * 120.00096 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 120.00056 * 0.02562 * 18 16 14 21 21 H 1.48497 * 109.47514 * 90.00040 * 20 18 16 22 22 H 1.48506 * 109.47256 * 210.00189 * 20 18 16 23 23 H 1.48501 * 109.47218 * 329.99780 * 20 18 16 24 24 C 1.46921 * 120.63106 * 179.97438 * 10 8 7 25 25 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 27 27 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46916 * 255.00433 * 3 2 1 29 29 H 1.09005 * 109.46734 * 14.99511 * 3 2 1 30 30 H 1.08995 * 109.46951 * 299.99938 * 5 4 3 31 31 H 1.09003 * 109.46817 * 59.99963 * 5 4 3 32 32 H 1.09000 * 109.46745 * 299.99966 * 6 5 4 33 33 H 1.09005 * 109.46675 * 59.99625 * 6 5 4 34 34 H 1.08995 * 109.47108 * 300.00178 * 7 6 5 35 35 H 1.08997 * 109.47170 * 60.00360 * 7 6 5 36 36 H 1.08992 * 109.58477 * 353.41439 * 11 10 8 37 37 H 1.09004 * 109.58232 * 113.84324 * 11 10 8 38 38 H 1.08997 * 109.56061 * 185.55746 * 12 11 10 39 39 H 1.09000 * 109.36117 * 65.50036 * 12 11 10 40 40 H 1.08992 * 109.46484 * 301.22112 * 13 12 11 41 41 H 1.09005 * 109.45818 * 181.26058 * 13 12 11 42 42 H 0.96996 * 119.99815 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.59073 * 246.15878 * 24 10 8 44 44 H 1.09000 * 109.58514 * 6.58690 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9077 2.4354 1.0328 6 6 5.0099 2.2547 2.0785 7 6 5.8464 3.5328 2.1639 8 6 6.9324 3.3546 3.1934 9 8 7.0282 2.3081 3.7989 10 7 7.7979 4.3577 3.4406 11 6 7.6990 5.6287 2.7101 12 6 9.0538 5.9470 2.0800 13 6 10.1350 5.9265 3.1629 14 6 10.2069 4.5314 3.7878 15 1 10.4265 3.7966 3.0132 16 6 11.2938 4.5024 4.8313 17 1 11.0510 4.2703 5.8577 18 6 12.5983 4.7720 4.4756 19 7 13.5470 4.7462 5.3861 20 14 13.0183 5.1740 2.7003 21 1 12.9189 6.6404 2.4879 22 1 14.4023 4.7238 2.4048 23 1 12.0677 4.4774 1.7968 24 6 8.8615 4.1992 4.4417 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0044 27 1 1.8501 -0.9353 -0.0004 28 1 2.4755 1.4868 -0.9927 29 1 1.3854 2.1161 0.2659 30 1 4.3579 2.6409 0.0617 31 1 3.2677 3.2695 1.3205 32 1 4.5592 2.0494 3.0495 33 1 5.6499 1.4204 1.7912 34 1 6.2969 3.7377 1.1928 35 1 5.2066 4.3673 2.4509 36 1 6.9449 5.5429 1.9279 37 1 7.4236 6.4263 3.4002 38 1 9.0191 6.9343 1.6193 39 1 9.2842 5.1989 1.3215 40 1 9.8910 6.6575 3.9336 41 1 11.0987 6.1754 2.7185 42 1 14.4647 4.9363 5.1358 43 1 8.6827 4.8780 5.2755 44 1 8.8741 3.1704 4.8015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -95.398063 kcal Electronic energy + Delta-G solvation = -21867.964967 eV Core-core repulsion = 18591.586898 eV Total energy + Delta-G solvation = -3276.378069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19118 -39.17988 -38.55331 -35.46136 -35.26269 -34.04611 -33.42913 -32.19911 -28.84116 -27.04763 -26.56341 -25.71751 -23.21583 -22.91954 -21.43722 -20.75924 -19.82125 -18.85820 -18.16404 -17.63787 -17.36825 -16.84157 -16.55084 -16.39733 -15.96948 -15.40868 -15.21207 -14.94724 -14.77600 -14.44202 -14.18403 -13.97144 -13.75723 -13.47482 -13.20268 -13.02961 -12.90140 -12.76043 -12.36860 -12.12360 -12.08520 -11.91505 -11.88105 -11.78018 -11.50121 -11.26914 -11.09336 -10.77601 -10.69640 -10.66184 -10.21815 -9.52704 -8.32913 -6.38274 1.24715 1.26806 1.34943 1.45236 1.68451 2.07929 2.30123 2.86751 3.01778 3.59048 3.96379 4.01117 4.01478 4.09294 4.18707 4.20207 4.29116 4.33114 4.38471 4.47555 4.54184 4.55519 4.57421 4.60321 4.65495 4.75579 4.79050 4.92782 4.98536 4.99402 5.12855 5.14617 5.16096 5.28813 5.39354 5.45064 5.65535 5.66842 5.73413 5.75318 6.24549 6.32033 6.56811 6.68196 7.24044 7.27954 8.83825 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.002804 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.535732 B = 9984.017896 C =10146.483166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 C 0.085 3.915 4 O -0.416 6.416 5 C 0.066 3.934 6 C -0.101 4.101 7 C -0.121 4.121 8 C 0.500 3.500 9 O -0.600 6.600 10 N -0.611 5.611 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.123 4.123 14 C 0.008 3.992 15 H 0.012 0.988 16 C -0.524 4.524 17 H 0.031 0.969 18 C 0.010 3.990 19 N -0.949 5.949 20 Si 0.958 3.042 21 H -0.255 1.255 22 H -0.302 1.302 23 H -0.252 1.252 24 C 0.137 3.863 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.266 0.734 43 H 0.060 0.940 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.031 2.550 -16.717 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.336 6.336 5 C -0.010 4.010 6 C -0.139 4.139 7 C -0.161 4.161 8 C 0.290 3.710 9 O -0.481 6.481 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.160 4.160 14 C -0.011 4.011 15 H 0.030 0.970 16 C -0.562 4.562 17 H 0.049 0.951 18 C -0.187 4.187 19 N -0.589 5.589 20 Si 0.784 3.216 21 H -0.181 1.181 22 H -0.230 1.230 23 H -0.176 1.176 24 C 0.014 3.986 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.787 1.892 -16.251 29.700 hybrid contribution 1.263 -0.154 0.104 1.277 sum -23.524 1.738 -16.148 28.586 Atomic orbital electron populations 1.24052 0.95095 1.03411 0.98098 1.22850 0.96367 0.98209 1.02131 1.21684 0.88633 0.96258 0.92524 1.87893 1.45616 1.38622 1.61488 1.22551 0.92363 0.87088 0.98951 1.21147 0.96225 0.97238 0.99338 1.21588 0.95185 1.00425 0.98874 1.21556 0.83208 0.82293 0.83943 1.90676 1.74729 1.29209 1.53526 1.48424 1.30119 1.16022 1.39771 1.21993 0.98303 0.84247 0.96961 1.21935 0.94500 1.03381 0.97441 1.21865 0.97934 0.97918 0.98303 1.19353 0.92434 0.94481 0.94871 0.96979 1.21246 0.92525 1.47293 0.95154 0.95087 1.25932 0.96031 0.94661 1.02102 1.70059 1.01543 1.51179 1.36090 0.85707 0.76267 0.79450 0.80128 1.18093 1.23035 1.17580 1.21284 0.86422 1.00452 0.90468 0.86810 0.87125 0.87515 0.91253 0.91380 0.91187 0.90886 0.92631 0.93073 0.85725 0.85077 0.85523 0.89697 0.87617 0.92327 0.91827 0.94557 0.92475 0.92148 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.31 67.78 0.97 -0.89 16 2 C -0.18 -2.62 9.89 25.64 0.25 -2.37 16 3 C 0.08 1.23 6.35 71.24 0.45 1.68 16 4 O -0.42 -8.72 10.33 -148.98 -1.54 -10.26 16 5 C 0.07 1.04 5.94 71.98 0.43 1.47 16 6 C -0.10 -2.22 4.87 30.59 0.15 -2.07 16 7 C -0.12 -2.22 4.05 29.85 0.12 -2.10 16 8 C 0.50 15.87 7.70 87.66 0.67 16.55 16 9 O -0.60 -25.67 15.39 -3.03 -0.05 -25.72 16 10 N -0.61 -19.51 2.98 -819.65 -2.44 -21.95 16 11 C 0.11 2.25 6.31 86.22 0.54 2.79 16 12 C -0.13 -3.44 6.06 30.53 0.19 -3.25 16 13 C -0.12 -4.65 4.66 30.62 0.14 -4.51 16 14 C 0.01 0.38 1.84 -11.45 -0.02 0.36 16 15 H 0.01 0.60 7.20 -2.38 -0.02 0.59 16 16 C -0.52 -30.47 9.15 25.60 0.23 -30.24 16 17 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 18 C 0.01 0.58 5.45 84.65 0.46 1.04 16 19 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 20 Si 0.96 45.04 24.39 68.60 1.67 46.71 16 21 H -0.26 -10.99 6.86 99.48 0.68 -10.31 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 23 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 24 C 0.14 5.80 5.66 86.38 0.49 6.28 16 25 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 26 H 0.11 0.90 7.90 -2.91 -0.02 0.87 16 27 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.75 7.86 -2.38 -0.02 0.74 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 34 H 0.12 1.57 7.68 -2.39 -0.02 1.55 16 35 H 0.13 1.45 7.95 -2.39 -0.02 1.43 16 36 H 0.13 1.48 5.93 -2.39 -0.01 1.46 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.47 3.27 -2.38 -0.01 1.46 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 Total: -1.00 -79.36 348.33 3.90 -75.46 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.87 Total: 10.83 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 5.08 Total: -15.25 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.14 Total: -81.77 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.59 Total: -35.97 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.67 Total: 46.71 kcal Total: -79.36 3.90 -75.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.943 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds