Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.67298 * 2 1 4 4 C 1.54998 * 110.61585 * 237.03668 * 2 1 3 5 5 C 1.54812 * 102.09340 * 204.47074 * 4 2 1 6 6 H 1.08990 * 110.48731 * 262.07421 * 5 4 2 7 7 C 1.50699 * 110.48693 * 139.55192 * 5 4 2 8 8 O 1.21279 * 120.00075 * 334.95907 * 7 5 4 9 9 N 1.34775 * 119.99903 * 154.94594 * 7 5 4 10 10 C 1.46924 * 120.63382 * 175.23083 * 9 7 5 11 11 C 1.53194 * 108.77984 * 233.59581 * 10 9 7 12 12 C 1.53037 * 109.31133 * 305.36672 * 11 10 9 13 13 C 1.50698 * 109.46035 * 181.38754 * 12 11 10 14 14 H 1.08005 * 119.99892 * 359.96652 * 13 12 11 15 15 C 1.37876 * 120.00021 * 180.24719 * 13 12 11 16 16 N 1.31508 * 120.00048 * 359.71957 * 15 13 12 17 17 Si 1.86798 * 119.99885 * 179.72032 * 15 13 12 18 18 H 1.48509 * 109.47376 * 60.00165 * 17 15 13 19 19 H 1.48500 * 109.47309 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47300 * 300.00016 * 17 15 13 21 21 C 1.53039 * 109.52965 * 61.37269 * 12 11 10 22 22 C 1.46924 * 120.63093 * 355.22182 * 9 7 5 23 23 C 1.54104 * 104.30097 * 20.81843 * 5 4 2 24 24 H 1.09005 * 109.87590 * 242.67234 * 23 5 4 25 25 C 1.52993 * 109.87972 * 121.51856 * 23 5 4 26 26 O 1.44050 * 107.13547 * 2.12641 * 23 5 4 27 27 H 1.09000 * 109.46867 * 182.96916 * 1 2 3 28 28 H 1.09002 * 109.46890 * 302.96368 * 1 2 3 29 29 H 1.08995 * 109.47553 * 62.96345 * 1 2 3 30 30 H 1.09006 * 110.90674 * 86.27692 * 4 2 1 31 31 H 1.08999 * 110.93589 * 322.68618 * 4 2 1 32 32 H 1.08998 * 109.58762 * 113.80212 * 10 9 7 33 33 H 1.09002 * 109.70266 * 353.45401 * 10 9 7 34 34 H 1.08993 * 109.49738 * 185.41010 * 11 10 9 35 35 H 1.09004 * 109.49444 * 65.31604 * 11 10 9 36 36 H 1.09003 * 109.45732 * 301.35422 * 12 11 10 37 37 H 0.97003 * 119.99877 * 179.97438 * 16 15 13 38 38 H 1.08992 * 109.50091 * 58.57426 * 21 12 11 39 39 H 1.08996 * 109.49733 * 178.68205 * 21 12 11 40 40 H 1.09005 * 109.58685 * 246.19467 * 22 9 7 41 41 H 1.09003 * 109.58934 * 6.47319 * 22 9 7 42 42 H 1.09000 * 109.47212 * 64.77531 * 25 23 5 43 43 H 1.09002 * 109.47172 * 184.77473 * 25 23 5 44 44 H 1.08997 * 109.47319 * 304.77365 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4796 -1.2167 -0.7237 6 1 4.2408 -0.5345 -1.1018 7 6 3.7809 -2.6303 -1.1502 8 8 2.8731 -3.4043 -1.3688 9 7 5.0591 -3.0343 -1.2890 10 6 5.3716 -4.4353 -1.6022 11 6 6.3634 -4.9641 -0.5612 12 6 7.5848 -4.0434 -0.5125 13 6 8.5780 -4.5793 0.4862 14 1 8.3597 -5.4854 1.0319 15 6 9.7628 -3.9098 0.7074 16 7 10.0287 -2.8065 0.0429 17 14 10.9904 -4.5698 1.9511 18 1 11.4188 -5.9335 1.5481 19 1 12.1741 -3.6745 2.0015 20 1 10.3547 -4.6268 3.2919 21 6 7.1493 -2.6372 -0.0941 22 6 6.1666 -2.0821 -1.1301 23 6 3.3875 -1.1247 0.8119 24 1 4.0893 -0.3768 1.1811 25 6 3.6995 -2.4871 1.4342 26 8 2.0385 -0.7353 1.1336 27 1 -0.3633 -1.0263 0.0532 28 1 -0.3633 0.5592 0.8623 29 1 -0.3634 0.4671 -0.9153 30 1 2.1509 -0.1475 -2.0951 31 1 1.4551 -1.6606 -1.4265 32 1 5.8165 -4.4973 -2.5953 33 1 4.4591 -5.0308 -1.5730 34 1 6.6773 -5.9709 -0.8363 35 1 5.8854 -4.9864 0.4182 36 1 8.0478 -4.0019 -1.4985 37 1 10.8621 -2.3353 0.1989 38 1 6.6638 -2.6817 0.8807 39 1 8.0227 -1.9877 -0.0369 40 1 6.6765 -1.9520 -2.0847 41 1 5.7775 -1.1223 -0.7900 42 1 4.7349 -2.7545 1.2230 43 1 3.5501 -2.4366 2.5128 44 1 3.0359 -3.2407 1.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -94.137962 kcal Electronic energy + Delta-G solvation = -23764.026301 eV Core-core repulsion = 20487.702874 eV Total energy + Delta-G solvation = -3276.323427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70049 -38.67303 -36.76621 -33.63340 -32.83433 -32.43438 -31.04893 -30.06392 -28.83025 -26.38843 -24.56829 -23.21590 -22.38449 -21.65327 -21.25749 -19.45094 -18.11613 -17.33279 -16.60131 -16.09212 -15.72062 -15.52912 -14.81633 -14.60116 -14.33637 -13.75287 -13.37925 -13.09664 -12.97960 -12.75506 -12.70330 -12.46932 -12.18959 -12.04290 -11.84369 -11.80066 -11.49075 -11.34688 -10.96472 -10.93128 -10.88089 -10.74534 -10.68557 -10.42488 -10.12437 -9.79044 -9.65833 -9.31095 -9.21576 -8.95852 -8.40944 -8.03591 -6.07099 -4.13288 2.88329 3.27456 3.32356 3.35488 3.39192 3.74428 4.37813 4.46540 4.60827 4.82942 4.88672 5.03340 5.16400 5.23014 5.28276 5.41835 5.45785 5.54402 5.58296 5.70313 5.75195 5.80501 5.90733 5.98045 6.00806 6.05370 6.11401 6.14407 6.17570 6.23403 6.41313 6.42440 6.63026 6.84746 6.94457 6.99839 7.10109 7.22478 7.61796 7.87251 7.87980 7.99308 8.35757 8.51834 8.89904 9.52179 10.98306 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.004485 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.223058 B = 6241.233074 C = 6603.758873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.148 4.148 6 H 0.104 0.896 7 C 0.529 3.471 8 O -0.555 6.555 9 N -0.599 5.599 10 C 0.112 3.888 11 C -0.123 4.123 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.124 4.124 22 C 0.099 3.901 23 C 0.096 3.904 24 H 0.077 0.923 25 C -0.169 4.169 26 O -0.369 6.369 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.041 0.959 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 6.927 -2.233 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.087 0.913 4 C -0.176 4.176 5 C -0.169 4.169 6 H 0.122 0.878 7 C 0.317 3.683 8 O -0.434 6.434 9 N -0.331 5.331 10 C -0.010 4.010 11 C -0.162 4.162 12 C 0.031 3.969 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.163 4.163 22 C -0.023 4.023 23 C 0.038 3.962 24 H 0.095 0.905 25 C -0.226 4.226 26 O -0.288 6.288 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.888 6.597 -2.178 14.641 hybrid contribution 1.115 -0.153 0.495 1.229 sum -11.773 6.444 -1.683 13.526 Atomic orbital electron populations 1.21754 0.93159 1.03156 1.02116 1.23086 0.95266 0.95012 0.85167 0.91331 1.23206 0.94620 1.01563 0.98167 1.22845 0.99936 0.96272 0.97872 0.87822 1.19981 0.82574 0.89124 0.76636 1.90624 1.44972 1.55632 1.52172 1.48236 1.05477 1.10763 1.68612 1.21693 0.99529 0.81060 0.98725 1.22015 0.97009 0.99885 0.97247 1.18621 0.90739 0.90300 0.97244 1.21166 1.01821 1.09380 1.22742 0.92751 1.24941 0.97919 0.94950 0.96030 1.69816 1.24677 1.17016 1.41576 0.86685 0.80696 0.78870 0.81918 1.20315 1.21307 1.20311 1.22057 0.97739 1.01475 0.94991 1.22123 0.87861 0.91104 1.01172 1.22560 0.84739 0.97668 0.91245 0.90502 1.22221 1.03510 0.95340 1.01550 1.88954 1.27772 1.73424 1.38691 0.91562 0.91994 0.91213 0.90221 0.88427 0.92264 0.90411 0.92126 0.92932 0.95474 0.92909 0.94005 0.87717 0.91860 0.91458 0.89620 0.91734 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.66 37.16 0.36 -1.04 16 2 C 0.07 0.83 3.98 -25.67 -0.10 0.73 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.69 6.08 -24.72 -0.15 -1.84 16 5 C -0.15 -2.05 2.60 -90.24 -0.24 -2.28 16 6 H 0.10 1.25 6.18 -51.93 -0.32 0.93 16 7 C 0.53 8.96 4.64 -10.99 -0.05 8.91 16 8 O -0.55 -10.89 14.44 5.56 0.08 -10.81 16 9 N -0.60 -10.31 2.46 -172.76 -0.42 -10.73 16 10 C 0.11 2.00 6.41 -3.71 -0.02 1.97 16 11 C -0.12 -2.44 5.30 -26.61 -0.14 -2.59 16 12 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 13 C -0.51 -13.31 8.56 -34.44 -0.29 -13.60 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -23.83 11.30 55.43 0.63 -23.21 16 17 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.12 -2.59 5.07 -26.61 -0.13 -2.72 16 22 C 0.10 1.68 6.06 -3.71 -0.02 1.66 16 23 C 0.10 1.37 4.07 -26.16 -0.11 1.26 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 C -0.17 -2.67 8.44 37.15 0.31 -2.36 16 26 O -0.37 -5.40 10.90 -35.23 -0.38 -5.78 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.40 6.77 -51.93 -0.35 1.05 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.04 0.88 6.53 -51.93 -0.34 0.54 16 39 H 0.10 2.46 6.02 -51.93 -0.31 2.14 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.97 5.44 -51.93 -0.28 0.69 16 42 H 0.09 1.45 5.48 -51.93 -0.28 1.17 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -28.42 332.15 -8.21 -36.64 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.22 Total: 2.81 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.87 Total: -9.41 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.20 Total: -33.94 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.30 Total: -16.59 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.42 -8.21 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.502 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds