Wall clock time and date at job start Tue Mar 31 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.82402 * 2 1 4 4 C 1.54376 * 109.83248 * 239.11302 * 2 1 3 5 5 C 1.55305 * 102.25437 * 219.03939 * 4 2 1 6 6 H 1.09006 * 111.12410 * 152.09428 * 5 4 2 7 7 C 1.50700 * 111.12464 * 276.21487 * 5 4 2 8 8 O 1.21274 * 120.00192 * 81.60019 * 7 5 4 9 9 N 1.34777 * 119.99511 * 261.59810 * 7 5 4 10 10 C 1.46924 * 120.63446 * 359.97438 * 9 7 5 11 11 C 1.53189 * 108.77677 * 233.60849 * 10 9 7 12 12 C 1.53037 * 109.31497 * 305.36720 * 11 10 9 13 13 C 1.50699 * 109.46044 * 181.38500 * 12 11 10 14 14 H 1.07994 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99936 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99689 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00061 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47335 * 89.99624 * 17 15 13 19 19 H 1.48499 * 109.47355 * 210.00134 * 17 15 13 20 20 H 1.48502 * 109.46919 * 329.99878 * 17 15 13 21 21 C 1.53038 * 109.54034 * 61.36410 * 12 11 10 22 22 C 1.46929 * 120.62604 * 179.97438 * 9 7 5 23 23 C 1.54950 * 100.93911 * 34.13196 * 5 4 2 24 24 H 1.09002 * 110.30799 * 82.46964 * 23 5 4 25 25 C 1.52996 * 110.30784 * 204.64077 * 23 5 4 26 26 O 1.43237 * 109.90347 * 120.93226 * 2 1 3 27 27 H 1.08999 * 109.47586 * 180.88472 * 1 2 3 28 28 H 1.09000 * 109.47280 * 300.88868 * 1 2 3 29 29 H 1.09005 * 109.46765 * 60.88607 * 1 2 3 30 30 H 1.09000 * 110.84802 * 100.84839 * 4 2 1 31 31 H 1.09006 * 110.84570 * 337.23039 * 4 2 1 32 32 H 1.09006 * 109.58541 * 113.82166 * 10 9 7 33 33 H 1.09002 * 109.58775 * 353.40156 * 10 9 7 34 34 H 1.09006 * 109.49686 * 185.41493 * 11 10 9 35 35 H 1.09002 * 109.49769 * 65.31667 * 11 10 9 36 36 H 1.09004 * 109.46141 * 301.34670 * 12 11 10 37 37 H 0.97005 * 119.99481 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.49876 * 58.58549 * 21 12 11 39 39 H 1.09000 * 109.49967 * 178.68318 * 21 12 11 40 40 H 1.08997 * 109.58911 * 6.60581 * 22 9 7 41 41 H 1.08996 * 109.58702 * 246.17819 * 22 9 7 42 42 H 1.08994 * 109.47205 * 67.78708 * 25 23 5 43 43 H 1.09000 * 109.47141 * 187.78783 * 25 23 5 44 44 H 1.09006 * 109.47282 * 307.78355 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2745 -1.5197 -0.6784 6 1 3.4598 -2.4317 -1.2460 7 6 4.5025 -0.6469 -0.6430 8 8 4.6668 0.1318 0.2720 9 7 5.4182 -0.7320 -1.6282 10 6 5.2335 -1.6710 -2.7430 11 6 6.4840 -2.5478 -2.8616 12 6 7.7189 -1.6532 -2.9914 13 6 8.9477 -2.5125 -3.1424 14 1 8.8570 -3.5886 -3.1460 15 6 10.1877 -1.9247 -3.2772 16 7 11.2599 -2.6747 -3.4095 17 14 10.3445 -0.0634 -3.2718 18 1 10.5454 0.4125 -1.8795 19 1 11.5066 0.3379 -4.1046 20 1 9.1061 0.5393 -3.8270 21 6 7.8553 -0.7842 -1.7391 22 6 6.6202 0.1127 -1.6079 23 6 2.7776 -1.8430 0.7532 24 1 2.1440 -2.7299 0.7425 25 6 3.9664 -2.0495 1.6939 26 8 2.0176 -0.6923 1.1553 27 1 -0.3634 -1.0275 0.0159 28 1 -0.3634 0.5276 0.8819 29 1 -0.3633 0.5000 -0.8979 30 1 2.3657 -0.0409 -2.0172 31 1 1.3017 -1.4347 -1.6305 32 1 5.0881 -1.1147 -3.6691 33 1 4.3635 -2.2992 -2.5513 34 1 6.4007 -3.1831 -3.7435 35 1 6.5777 -3.1702 -1.9717 36 1 7.6135 -1.0134 -3.8676 37 1 12.1323 -2.2611 -3.5039 38 1 7.9360 -1.4232 -0.8598 39 1 8.7480 -0.1642 -1.8220 40 1 6.6654 0.6614 -0.6671 41 1 6.5879 0.8144 -2.4413 42 1 4.4896 -1.1032 1.8313 43 1 3.6083 -2.4100 2.6582 44 1 4.6482 -2.7824 1.2624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:55 Heat of formation + Delta-G solvation = -82.014807 kcal Electronic energy + Delta-G solvation = -23650.682286 eV Core-core repulsion = 20374.884559 eV Total energy + Delta-G solvation = -3275.797728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83772 -38.82566 -36.92239 -33.71786 -32.82260 -32.57105 -31.42246 -30.59473 -28.91367 -26.64048 -24.64018 -23.16693 -23.07353 -21.72023 -20.89828 -19.77669 -18.53632 -17.63302 -16.82940 -16.26754 -15.67828 -15.34745 -15.27866 -14.67021 -14.32658 -13.86911 -13.61908 -13.42055 -13.12483 -13.08552 -12.77685 -12.64047 -12.40366 -12.25093 -12.19782 -11.98696 -11.70557 -11.64468 -11.49582 -11.06261 -10.91622 -10.85788 -10.77953 -10.22305 -10.06334 -9.78819 -9.63325 -9.47218 -9.24410 -9.10653 -8.59237 -8.21059 -6.13197 -4.12901 2.71721 3.16846 3.23269 3.32002 3.35828 3.67397 4.33695 4.34932 4.44223 4.55585 4.74496 4.97723 5.02274 5.16780 5.17255 5.29866 5.33383 5.39923 5.44108 5.50072 5.52586 5.56496 5.69264 5.76038 5.79754 5.81626 5.89075 5.96809 6.02151 6.06469 6.16795 6.21298 6.45410 6.52481 6.62401 6.75144 6.84954 7.07687 7.11891 7.42305 7.66926 7.70727 8.39493 8.44939 8.90280 9.49017 11.00041 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033844 B = 0.004348 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.127923 B = 6438.517477 C = 6483.731559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 H 0.079 0.921 4 C -0.135 4.135 5 C -0.151 4.151 6 H 0.112 0.888 7 C 0.522 3.478 8 O -0.534 6.534 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.115 4.115 12 C 0.015 3.985 13 C -0.515 4.515 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.265 1.265 21 C -0.134 4.134 22 C 0.108 3.892 23 C 0.104 3.896 24 H 0.074 0.926 25 C -0.167 4.167 26 O -0.364 6.364 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.674 2.846 3.271 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 H 0.097 0.903 4 C -0.173 4.173 5 C -0.173 4.173 6 H 0.130 0.870 7 C 0.310 3.690 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.153 4.153 12 C -0.004 4.004 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.172 4.172 22 C -0.014 4.014 23 C 0.046 3.954 24 H 0.091 0.909 25 C -0.224 4.224 26 O -0.284 6.284 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.414 3.323 3.934 20.086 hybrid contribution 0.430 0.785 -0.401 0.981 sum -18.984 4.109 3.532 19.743 Atomic orbital electron populations 1.22154 0.95060 1.02405 1.02239 1.22635 0.93717 0.96799 0.84614 0.90306 1.23118 0.95889 0.99684 0.98564 1.23188 0.94386 1.00209 0.99481 0.87001 1.20048 0.83715 0.83529 0.81726 1.90639 1.77390 1.38901 1.34223 1.48168 1.21608 1.39904 1.23607 1.22020 0.99619 0.91752 0.88887 1.21840 0.93714 0.97854 1.01863 1.19123 0.94285 0.94218 0.92764 1.21021 0.89509 0.94565 1.50185 0.90846 1.25034 0.95859 0.97899 0.94428 1.69896 0.98585 1.35400 1.49921 0.86877 0.77361 0.86536 0.77648 1.20470 1.22440 1.19043 1.22363 0.94692 0.98291 1.01831 1.21760 0.84474 0.93081 1.02126 1.22705 0.92470 0.88948 0.91277 0.90857 1.22165 0.97004 1.04393 0.98866 1.88443 1.70081 1.40331 1.29522 0.92260 0.91932 0.91648 0.89820 0.89378 0.91600 0.90557 0.91220 0.92177 0.95433 0.92611 0.91712 0.92470 0.89896 0.92216 0.88961 0.92365 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.44 37.16 0.35 -1.05 16 2 C 0.08 0.92 3.86 -26.01 -0.10 0.82 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -1.33 6.04 -24.79 -0.15 -1.48 16 5 C -0.15 -1.80 2.74 -89.52 -0.25 -2.04 16 6 H 0.11 1.12 5.85 -51.93 -0.30 0.81 16 7 C 0.52 8.14 5.98 -10.99 -0.07 8.07 16 8 O -0.53 -9.96 13.17 4.23 0.06 -9.90 16 9 N -0.60 -9.57 2.97 -172.76 -0.51 -10.09 16 10 C 0.10 1.39 6.33 -3.71 -0.02 1.37 16 11 C -0.11 -2.00 5.30 -26.61 -0.14 -2.15 16 12 C 0.02 0.33 1.66 -91.73 -0.15 0.18 16 13 C -0.52 -13.83 9.14 -34.44 -0.31 -14.14 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.89 21.38 24.38 -169.99 -4.14 17.23 16 18 H -0.28 -6.59 6.86 56.52 0.39 -6.20 16 19 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 21 C -0.13 -2.79 4.85 -26.61 -0.13 -2.92 16 22 C 0.11 1.93 6.43 -3.70 -0.02 1.90 16 23 C 0.10 1.29 3.74 -25.70 -0.10 1.19 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.17 -2.25 8.78 37.16 0.33 -1.93 16 26 O -0.36 -5.11 10.41 -36.56 -0.38 -5.49 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 31 H 0.09 0.66 7.85 -51.93 -0.41 0.26 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.83 5.27 -51.93 -0.27 0.56 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.27 3.24 -51.93 -0.17 1.11 16 40 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.52 5.72 -51.93 -0.30 1.22 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -31.36 329.27 -7.39 -38.75 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.28 Total: 1.12 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.86 Total: -10.32 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.26 Total: -36.35 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.32 Total: -15.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.36 -7.39 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.263 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds