Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99006 * 2 1 4 4 C 1.54097 * 109.87630 * 238.91425 * 2 1 3 5 5 C 1.54811 * 104.18925 * 238.54451 * 4 2 1 6 6 H 1.09001 * 110.90631 * 97.34971 * 5 4 2 7 7 C 1.50695 * 110.91129 * 220.92566 * 5 4 2 8 8 O 1.21274 * 120.00413 * 118.81668 * 7 5 4 9 9 N 1.34784 * 119.99635 * 298.54626 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.53629 * 108.54410 * 126.36956 * 10 9 7 12 12 C 1.53042 * 109.24095 * 54.85227 * 11 10 9 13 13 C 1.50697 * 109.45080 * 178.49917 * 12 11 10 14 14 H 1.07998 * 119.99928 * 120.06664 * 13 12 11 15 15 C 1.37884 * 119.99880 * 300.06480 * 13 12 11 16 16 N 1.31512 * 120.00087 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99738 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47079 * 60.00573 * 17 15 13 19 19 H 1.48500 * 109.46709 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47098 * 299.99821 * 17 15 13 21 21 C 1.53042 * 109.54144 * 298.51747 * 12 11 10 22 22 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 23 23 C 1.55002 * 102.09126 * 339.12277 * 5 4 2 24 24 H 1.09006 * 110.61727 * 278.52239 * 23 5 4 25 25 C 1.52999 * 110.61778 * 155.52422 * 23 5 4 26 26 O 1.43747 * 109.87696 * 121.08236 * 2 1 3 27 27 H 1.09001 * 109.47629 * 181.08817 * 1 2 3 28 28 H 1.09003 * 109.47364 * 301.08416 * 1 2 3 29 29 H 1.08993 * 109.47545 * 61.08334 * 1 2 3 30 30 H 1.09006 * 110.48467 * 119.87157 * 4 2 1 31 31 H 1.09001 * 110.48989 * 357.22139 * 4 2 1 32 32 H 1.08995 * 109.59003 * 246.20126 * 10 9 7 33 33 H 1.08997 * 109.58851 * 6.63324 * 10 9 7 34 34 H 1.09001 * 109.63104 * 294.86584 * 11 10 9 35 35 H 1.09002 * 109.43669 * 174.72493 * 11 10 9 36 36 H 1.09006 * 109.45415 * 58.53401 * 12 11 10 37 37 H 0.97001 * 119.99686 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.49049 * 301.40836 * 21 12 11 39 39 H 1.08996 * 109.52462 * 181.32960 * 21 12 11 40 40 H 1.08994 * 109.58636 * 353.37407 * 22 9 7 41 41 H 1.09001 * 109.57902 * 113.79870 * 22 9 7 42 42 H 1.08997 * 109.47202 * 60.00122 * 25 23 5 43 43 H 1.09004 * 109.46861 * 180.02562 * 25 23 5 44 44 H 1.08996 * 109.47005 * 299.99815 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0539 -0.7482 -1.2411 5 6 2.9195 -1.8915 -0.6576 6 1 2.3540 -2.8222 -0.6104 7 6 4.1826 -2.0726 -1.4592 8 8 5.2634 -1.9182 -0.9311 9 7 4.1113 -2.4115 -2.7618 10 6 2.8097 -2.6137 -3.4124 11 6 2.7472 -1.7279 -4.6661 12 6 3.9508 -2.0339 -5.5603 13 6 3.8746 -1.1938 -6.8091 14 1 4.6684 -0.4995 -7.0421 15 6 2.7915 -1.3116 -7.6542 16 7 1.8252 -2.1574 -7.3707 17 14 2.6968 -0.2697 -9.2018 18 1 3.8637 -0.5669 -10.0708 19 1 1.4424 -0.5821 -9.9327 20 1 2.7084 1.1684 -8.8318 21 6 5.2434 -1.7114 -4.8070 22 6 5.3340 -2.5911 -3.5566 23 6 3.2379 -1.3641 0.7648 24 1 4.0685 -0.6588 0.7356 25 6 3.5475 -2.5244 1.7128 26 8 2.0187 -0.6979 1.1577 27 1 -0.3634 -1.0275 0.0195 28 1 -0.3634 0.5306 0.8801 29 1 -0.3634 0.4969 -0.8995 30 1 2.6619 -0.0859 -1.8574 31 1 1.2245 -1.1549 -1.8197 32 1 2.7015 -3.6607 -3.6958 33 1 2.0106 -2.3344 -2.7258 34 1 2.7685 -0.6780 -4.3740 35 1 1.8266 -1.9357 -5.2115 36 1 3.9425 -3.0896 -5.8317 37 1 1.0631 -2.2400 -7.9651 38 1 5.2412 -0.6616 -4.5137 39 1 6.0997 -1.9071 -5.4523 40 1 6.2008 -2.2968 -2.9650 41 1 5.4278 -3.6362 -3.8513 42 1 4.4095 -3.0778 1.3403 43 1 3.7679 -2.1332 2.7060 44 1 2.6852 -3.1888 1.7675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = -96.984006 kcal Electronic energy + Delta-G solvation = -23571.382292 eV Core-core repulsion = 20294.935451 eV Total energy + Delta-G solvation = -3276.446841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59413 -38.74998 -36.81888 -33.68239 -32.73521 -32.66957 -31.07210 -30.06220 -28.79438 -26.38969 -24.64161 -23.06404 -22.53171 -21.49520 -21.18832 -19.83341 -18.30989 -17.20744 -16.41751 -16.05410 -15.83668 -15.16940 -14.76802 -14.59985 -14.42398 -13.89902 -13.51552 -13.17899 -13.03152 -12.83705 -12.59474 -12.55866 -12.25801 -12.18309 -11.95122 -11.78077 -11.56477 -11.27993 -11.15891 -10.96892 -10.86481 -10.72752 -10.64093 -10.43061 -10.14165 -9.75438 -9.61494 -9.40771 -9.22550 -8.97550 -8.42834 -8.05951 -6.08020 -4.14256 2.87274 3.26321 3.31278 3.34204 3.35760 3.74092 4.36745 4.49388 4.58284 4.75447 4.87403 5.09450 5.15247 5.21613 5.28451 5.36592 5.50413 5.53197 5.56891 5.69522 5.75764 5.82397 5.90148 5.92438 5.96310 6.04848 6.07623 6.10169 6.10806 6.18234 6.23752 6.40390 6.60181 6.83210 6.92959 6.97896 7.08073 7.21636 7.60861 7.85724 7.86318 7.98238 8.34881 8.47357 8.88901 9.51112 10.97421 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.004806 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.884730 B = 5824.613171 C = 6675.389572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.144 4.144 5 C -0.139 4.139 6 H 0.108 0.892 7 C 0.522 3.478 8 O -0.557 6.557 9 N -0.596 5.596 10 C 0.093 3.907 11 C -0.122 4.122 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.123 4.123 22 C 0.111 3.889 23 C 0.095 3.905 24 H 0.082 0.918 25 C -0.141 4.141 26 O -0.373 6.373 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.104 0.896 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 0.026 12.985 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.181 4.181 5 C -0.160 4.160 6 H 0.126 0.874 7 C 0.309 3.691 8 O -0.436 6.436 9 N -0.327 5.327 10 C -0.029 4.029 11 C -0.160 4.160 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.161 4.161 22 C -0.011 4.011 23 C 0.037 3.963 24 H 0.099 0.901 25 C -0.199 4.199 26 O -0.293 6.293 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.723 0.030 13.366 13.477 hybrid contribution -0.128 0.537 -1.318 1.429 sum -1.850 0.567 12.048 12.202 Atomic orbital electron populations 1.21935 0.93553 1.02861 1.02382 1.22709 0.95167 0.95797 0.84744 0.91355 1.23174 1.00091 0.96721 0.98158 1.22873 0.95772 1.01123 0.96236 0.87403 1.20158 0.90142 0.76685 0.82113 1.90637 1.29945 1.52689 1.70355 1.48219 1.08721 1.66896 1.08905 1.22364 0.82986 1.00965 0.96591 1.22086 1.04709 0.96358 0.92865 1.18631 0.88692 0.97148 0.92514 1.21165 1.05443 1.22603 1.05915 0.92772 1.24947 0.95727 0.95322 0.97846 1.69820 1.09650 1.36034 1.37589 0.86682 0.77331 0.80803 0.83341 1.20291 1.21283 1.20334 1.21997 1.01055 0.98405 0.94656 1.21705 0.86569 0.99819 0.93005 1.22887 0.87745 0.94460 0.91179 0.90062 1.21739 1.02130 0.96886 0.99103 1.88870 1.39940 1.67411 1.33074 0.91829 0.92073 0.91026 0.89791 0.88860 0.91985 0.90750 0.94224 0.87776 0.95483 0.92898 0.93012 0.92127 0.90338 0.92186 0.90602 0.91904 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.36 37.16 0.35 -1.16 16 2 C 0.07 0.88 4.06 -26.16 -0.11 0.78 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.14 -1.84 4.84 -25.20 -0.12 -1.96 16 5 C -0.14 -1.90 2.01 -89.76 -0.18 -2.08 16 6 H 0.11 1.35 7.95 -51.93 -0.41 0.93 16 7 C 0.52 8.77 6.99 -10.98 -0.08 8.69 16 8 O -0.56 -10.72 15.09 5.56 0.08 -10.63 16 9 N -0.60 -10.31 2.97 -172.54 -0.51 -10.83 16 10 C 0.09 1.58 5.98 -3.49 -0.02 1.56 16 11 C -0.12 -2.55 5.17 -26.38 -0.14 -2.69 16 12 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 13 C -0.51 -13.36 8.56 -34.44 -0.29 -13.65 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -23.84 11.31 55.43 0.63 -23.22 16 17 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.12 -2.46 5.30 -26.63 -0.14 -2.60 16 22 C 0.11 1.99 6.43 -3.73 -0.02 1.96 16 23 C 0.09 1.29 3.02 -25.67 -0.08 1.21 16 24 H 0.08 1.22 7.53 -51.93 -0.39 0.83 16 25 C -0.14 -1.68 9.66 37.16 0.36 -1.32 16 26 O -0.37 -5.09 10.89 -35.23 -0.38 -5.47 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 31 H 0.09 1.11 6.18 -51.93 -0.32 0.79 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.08 3.92 -51.93 -0.20 0.88 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 2.44 6.03 -51.93 -0.31 2.13 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -28.10 338.08 -8.31 -36.41 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.44 Total: 1.98 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.76 Total: -8.77 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.11 Total: -34.04 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.30 Total: -16.10 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.10 -8.31 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.577 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds