Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.27219 * 2 1 4 4 C 1.54941 * 110.31118 * 237.91336 * 2 1 3 5 5 C 1.55308 * 100.93928 * 204.54069 * 4 2 1 6 6 H 1.09004 * 110.84751 * 275.73366 * 5 4 2 7 7 C 1.50704 * 110.84578 * 152.32536 * 5 4 2 8 8 O 1.21282 * 119.99243 * 264.84037 * 7 5 4 9 9 N 1.34776 * 120.00421 * 84.84502 * 7 5 4 10 10 C 1.46921 * 120.62872 * 4.57054 * 9 7 5 11 11 C 1.52763 * 109.00657 * 233.58515 * 10 9 7 12 12 C 1.53040 * 109.37906 * 305.58702 * 11 10 9 13 13 C 1.50705 * 109.44716 * 181.25762 * 12 11 10 14 14 H 1.08005 * 119.99572 * 239.94057 * 13 12 11 15 15 C 1.37876 * 120.00436 * 59.93592 * 13 12 11 16 16 N 1.31518 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00092 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47416 * 60.00046 * 17 15 13 19 19 H 1.48505 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47255 * 299.99914 * 17 15 13 21 21 C 1.53039 * 109.54020 * 61.24146 * 12 11 10 22 22 C 1.46929 * 120.62863 * 184.84544 * 9 7 5 23 23 C 1.54371 * 102.25650 * 34.12932 * 5 4 2 24 24 H 1.09003 * 109.83104 * 98.24789 * 23 5 4 25 25 C 1.53000 * 109.83508 * 219.13238 * 23 5 4 26 26 O 1.43244 * 107.58895 * 338.64744 * 23 5 4 27 27 H 1.08997 * 109.46538 * 180.70088 * 1 2 3 28 28 H 1.09001 * 109.47315 * 300.69647 * 1 2 3 29 29 H 1.08998 * 109.47192 * 60.69919 * 1 2 3 30 30 H 1.09004 * 111.12361 * 322.45564 * 4 2 1 31 31 H 1.08995 * 111.13081 * 86.57713 * 4 2 1 32 32 H 1.09007 * 109.58878 * 353.41409 * 10 9 7 33 33 H 1.08997 * 109.59138 * 113.84202 * 10 9 7 34 34 H 1.08997 * 109.56339 * 185.55272 * 11 10 9 35 35 H 1.08996 * 109.36074 * 65.49903 * 11 10 9 36 36 H 1.09008 * 109.46072 * 301.21574 * 12 11 10 37 37 H 0.96997 * 119.99896 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.49310 * 178.68183 * 21 12 11 39 39 H 1.08999 * 109.52226 * 58.60479 * 21 12 11 40 40 H 1.09002 * 109.58364 * 246.15541 * 22 9 7 41 41 H 1.08998 * 109.58591 * 6.44300 * 22 9 7 42 42 H 1.09000 * 109.47167 * 59.99477 * 25 23 5 43 43 H 1.08991 * 109.47362 * 180.02562 * 25 23 5 44 44 H 1.09001 * 109.46988 * 299.99822 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0226 0.0000 4 6 2.0679 -0.7719 -1.2311 5 6 3.4710 -1.1995 -0.7209 6 1 4.1981 -0.4013 -0.8706 7 6 3.9239 -2.4679 -1.3971 8 8 3.7388 -3.5400 -0.8612 9 7 4.5347 -2.4108 -2.5972 10 6 4.8557 -1.1160 -3.2129 11 6 4.2690 -1.0764 -4.6228 12 6 4.7652 -2.2891 -5.4135 13 6 4.2121 -2.2352 -6.8144 14 1 3.5875 -3.0371 -7.1795 15 6 4.5032 -1.1623 -7.6298 16 7 5.2642 -0.1860 -7.1853 17 14 3.8170 -1.0952 -9.3658 18 1 2.3331 -1.1130 -9.3126 19 1 4.2741 0.1514 -10.0310 20 1 4.2989 -2.2710 -10.1344 21 6 4.2946 -3.5742 -4.7286 22 6 4.8866 -3.6422 -3.3174 23 6 3.2140 -1.4398 0.7822 24 1 3.0684 -2.5041 0.9670 25 6 4.4018 -0.9289 1.6001 26 8 2.0306 -0.7164 1.1400 27 1 -0.3632 -1.0276 0.0126 28 1 -0.3634 0.5246 0.8837 29 1 -0.3633 0.5029 -0.8962 30 1 1.4482 -1.6412 -1.4512 31 1 2.1473 -0.1190 -2.1003 32 1 4.4253 -0.3112 -2.6168 33 1 5.9376 -0.9952 -3.2668 34 1 4.5846 -0.1614 -5.1239 35 1 3.1810 -1.1019 -4.5623 36 1 5.8545 -2.2762 -5.4526 37 1 5.4687 0.5690 -7.7588 38 1 4.6285 -4.4369 -5.3051 39 1 3.2064 -3.5768 -4.6672 40 1 5.9712 -3.7315 -3.3799 41 1 4.4788 -4.5038 -2.7888 42 1 4.5324 0.1387 1.4232 43 1 4.2145 -1.1017 2.6598 44 1 5.3050 -1.4600 1.2999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -100.108176 kcal Electronic energy + Delta-G solvation = -23431.735914 eV Core-core repulsion = 20155.153599 eV Total energy + Delta-G solvation = -3276.582315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57576 -38.81496 -36.82702 -33.62942 -32.81021 -32.60110 -31.11088 -30.14957 -28.86495 -26.38935 -24.72690 -23.15052 -22.53291 -21.69622 -21.00952 -19.56385 -18.22669 -17.61072 -16.49633 -16.18969 -15.80195 -15.04392 -14.82323 -14.58995 -14.27228 -13.80525 -13.48730 -13.18129 -13.03218 -12.89315 -12.75988 -12.62369 -12.49522 -12.20057 -11.88092 -11.83536 -11.54435 -11.35805 -11.18206 -10.97466 -10.88691 -10.77741 -10.70833 -10.44108 -10.16123 -9.76833 -9.55656 -9.34900 -9.24061 -8.98548 -8.43513 -8.08361 -6.08715 -4.14938 2.81925 3.25953 3.30926 3.33373 3.34391 3.68872 4.36250 4.44887 4.60584 4.66840 4.97363 5.01471 5.11792 5.21217 5.27863 5.35442 5.44246 5.52597 5.55466 5.64035 5.68402 5.76244 5.87716 5.89128 5.94731 6.01666 6.07159 6.09057 6.11690 6.21522 6.23335 6.39249 6.59010 6.82195 6.96775 7.03723 7.06433 7.19902 7.59856 7.83989 7.85058 7.97288 8.34016 8.45442 8.88215 9.50497 10.96847 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.004524 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.476749 B = 6187.284511 C = 6770.914054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 H 0.072 0.928 4 C -0.136 4.136 5 C -0.142 4.142 6 H 0.107 0.893 7 C 0.523 3.477 8 O -0.555 6.555 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.124 4.124 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.123 4.123 22 C 0.111 3.889 23 C 0.089 3.911 24 H 0.101 0.899 25 C -0.160 4.160 26 O -0.375 6.375 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 2.261 12.615 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 H 0.089 0.911 4 C -0.174 4.174 5 C -0.164 4.164 6 H 0.125 0.875 7 C 0.310 3.690 8 O -0.435 6.435 9 N -0.327 5.327 10 C -0.021 4.021 11 C -0.162 4.162 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.161 4.161 22 C -0.011 4.011 23 C 0.031 3.969 24 H 0.118 0.882 25 C -0.217 4.217 26 O -0.295 6.295 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.416 1.874 13.012 13.583 hybrid contribution -0.133 0.246 -1.385 1.413 sum -3.549 2.120 11.626 12.340 Atomic orbital electron populations 1.21883 0.93598 1.02970 1.02341 1.22928 0.94977 0.95412 0.84605 0.91052 1.23280 0.93807 1.01429 0.98915 1.22895 0.99487 0.97692 0.96305 0.87520 1.20053 0.77530 0.90127 0.81242 1.90631 1.57438 1.30780 1.64638 1.48215 1.57624 1.08705 1.18188 1.22023 1.00345 0.82879 0.96870 1.21950 0.98482 1.04799 0.91016 1.18630 0.96376 0.88665 0.93295 1.21164 1.31000 1.05532 0.97406 0.92754 1.24947 0.94972 0.95677 0.98268 1.69819 1.37239 1.09639 1.36435 0.86675 0.79402 0.77344 0.84698 1.20326 1.21282 1.20287 1.22009 0.99963 1.01101 0.93058 1.21721 0.99440 0.86250 0.93662 1.22658 0.85413 0.97810 0.90974 0.88174 1.22128 0.97358 1.01457 1.00777 1.88421 1.42118 1.64950 1.34017 0.91835 0.91931 0.91068 0.89736 0.88861 0.91430 0.91832 0.87675 0.94242 0.95440 0.92888 0.92069 0.92987 0.92135 0.90363 0.92293 0.91771 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.62 37.16 0.36 -1.15 16 2 C 0.08 0.91 4.07 -25.70 -0.10 0.80 16 3 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 4 C -0.14 -1.73 5.92 -24.48 -0.14 -1.88 16 5 C -0.14 -1.95 1.90 -89.83 -0.17 -2.12 16 6 H 0.11 1.30 6.28 -51.93 -0.33 0.98 16 7 C 0.52 8.87 6.93 -10.98 -0.08 8.79 16 8 O -0.56 -10.90 14.93 5.56 0.08 -10.82 16 9 N -0.60 -10.33 2.98 -173.03 -0.52 -10.85 16 10 C 0.10 1.71 6.26 -3.93 -0.02 1.68 16 11 C -0.12 -2.60 5.14 -26.83 -0.14 -2.74 16 12 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 13 C -0.51 -13.32 8.56 -34.44 -0.29 -13.62 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -23.83 11.31 55.43 0.63 -23.20 16 17 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 22 C 0.11 1.99 6.42 -3.71 -0.02 1.97 16 23 C 0.09 1.21 3.70 -26.01 -0.10 1.12 16 24 H 0.10 1.56 6.71 -51.93 -0.35 1.22 16 25 C -0.16 -1.82 9.44 37.16 0.35 -1.47 16 26 O -0.38 -5.18 10.70 -35.23 -0.38 -5.55 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 31 H 0.09 1.11 7.98 -51.93 -0.41 0.70 16 32 H 0.07 0.97 5.34 -51.93 -0.28 0.69 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.11 2.46 6.03 -51.93 -0.31 2.15 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.40 7.03 -51.93 -0.37 1.04 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -28.32 340.63 -8.36 -36.67 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.49 Total: 1.94 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.79 Total: -8.73 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.11 Total: -34.05 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.29 Total: -16.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.32 -8.36 -36.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.434 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds