Wall clock time and date at job start Tue Mar 31 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46838 * 2 1 4 4 C 1.53001 * 109.47209 * 178.92610 * 3 2 1 5 5 H 1.08994 * 109.47448 * 305.28042 * 4 3 2 6 6 C 1.53001 * 109.47344 * 185.27454 * 4 3 2 7 7 N 1.46901 * 109.47082 * 174.63364 * 6 4 3 8 8 C 1.46898 * 110.99735 * 199.15474 * 7 6 4 9 9 C 1.50706 * 109.46689 * 164.30749 * 8 7 6 10 10 H 1.08002 * 120.00386 * 3.03677 * 9 8 7 11 11 C 1.37880 * 119.99883 * 183.04588 * 9 8 7 12 12 N 1.31505 * 119.99966 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99760 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47266 * 90.00062 * 13 11 9 15 15 H 1.48503 * 109.46886 * 209.99749 * 13 11 9 16 16 H 1.48498 * 109.47505 * 329.99529 * 13 11 9 17 17 C 1.46902 * 110.99720 * 75.20395 * 7 6 4 18 18 C 1.50698 * 109.47290 * 58.11239 * 17 7 6 19 19 C 1.34517 * 125.78551 * 90.00106 * 18 17 7 20 20 C 1.41385 * 106.83838 * 180.02562 * 19 18 17 21 21 C 1.34515 * 106.84081 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42048 * 359.73737 * 21 20 19 23 23 O 1.42907 * 109.46978 * 65.27818 * 4 3 2 24 24 C 1.42897 * 113.99831 * 259.70282 * 23 4 3 25 25 H 1.09002 * 109.47582 * 60.00117 * 1 2 3 26 26 H 1.09002 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47806 * 300.00208 * 1 2 3 28 28 H 1.08995 * 109.47597 * 240.00302 * 2 1 3 29 29 H 1.08994 * 109.46868 * 119.99471 * 2 1 3 30 30 H 1.08998 * 109.47485 * 58.92841 * 3 2 1 31 31 H 1.09001 * 109.47415 * 298.92992 * 3 2 1 32 32 H 1.09000 * 109.47058 * 294.64153 * 6 4 3 33 33 H 1.09004 * 109.46977 * 54.63814 * 6 4 3 34 34 H 1.09000 * 109.47334 * 284.30409 * 8 7 6 35 35 H 1.08996 * 109.47286 * 44.31152 * 8 7 6 36 36 H 0.97004 * 120.00355 * 180.02562 * 12 11 9 37 37 H 1.08994 * 109.47116 * 178.11645 * 17 7 6 38 38 H 1.09001 * 109.47231 * 298.11569 * 17 7 6 39 39 H 1.08001 * 126.58121 * 359.95928 * 19 18 17 40 40 H 1.08002 * 126.57851 * 179.97438 * 20 19 18 41 41 H 1.08003 * 125.78250 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47052 * 304.46920 * 24 23 4 43 43 H 1.09006 * 109.47502 * 64.46787 * 24 23 4 44 44 H 1.09001 * 109.47336 * 184.47059 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5697 1.4427 0.0270 5 1 3.9182 0.8545 0.8759 6 6 4.0773 2.8800 0.1597 7 7 5.5381 2.8710 0.3147 8 6 6.0143 4.1369 0.8878 9 6 7.4256 3.9627 1.3872 10 1 7.9366 3.0220 1.2447 11 6 8.0642 5.0043 2.0262 12 7 7.4421 6.1499 2.1995 13 14 9.8131 4.7881 2.6458 14 1 10.7684 5.1840 1.5799 15 1 10.0238 5.6430 3.8417 16 1 10.0376 3.3657 3.0084 17 6 6.2016 2.5900 -0.9655 18 6 5.7921 3.6251 -1.9813 19 6 6.4205 4.7918 -2.2126 20 6 5.7026 5.4470 -3.2394 21 6 4.6789 4.6413 -3.5745 22 8 4.7417 3.5365 -2.8135 23 8 4.0675 0.8717 -1.1847 24 6 4.4793 -0.4909 -1.0588 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8899 29 1 1.8932 -0.5137 0.8900 30 1 1.6610 1.9619 0.8802 31 1 1.6923 1.9509 -0.8994 32 1 3.8101 3.4436 -0.7342 33 1 3.6221 3.3469 1.0331 34 1 5.9929 4.9130 0.1228 35 1 5.3687 4.4261 1.7170 36 1 7.8915 6.8828 2.6487 37 1 7.2825 2.6223 -0.8292 38 1 5.9090 1.6006 -1.3169 39 1 7.3032 5.1582 -1.7097 40 1 5.9321 6.4098 -3.6718 41 1 3.9355 4.8460 -4.3308 42 1 5.2192 -0.5748 -0.2628 43 1 3.6154 -1.1108 -0.8186 44 1 4.9172 -0.8265 -1.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:08 Heat of formation + Delta-G solvation = -35.764336 kcal Electronic energy + Delta-G solvation = -23434.528773 eV Core-core repulsion = 20160.736616 eV Total energy + Delta-G solvation = -3273.792157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92989 -38.67484 -36.19895 -34.42051 -32.57614 -32.31021 -30.72604 -29.24810 -27.12035 -26.33946 -25.70842 -23.97347 -21.76079 -21.02394 -20.75423 -20.72089 -19.33255 -16.93933 -16.67227 -16.03685 -15.66522 -15.59475 -14.80579 -14.69348 -14.42658 -13.77459 -13.72905 -13.65183 -13.30434 -12.90562 -12.37091 -12.24294 -12.17292 -12.08579 -11.85984 -11.68671 -11.38565 -11.36687 -11.05001 -10.89551 -10.74453 -10.71658 -10.54221 -10.42485 -10.27578 -9.92310 -9.40412 -9.20100 -8.85758 -8.41870 -7.81994 -7.33400 -5.99942 -4.01048 2.37339 3.28530 3.32606 3.39224 3.42990 3.68409 4.11553 4.43014 4.72725 5.02063 5.07840 5.20321 5.34812 5.37066 5.42612 5.53090 5.62803 5.63177 5.64229 5.72263 5.74547 5.81262 5.84071 5.90906 5.99460 6.08369 6.14301 6.24260 6.27906 6.33168 6.45382 6.50647 6.61323 6.69169 6.81187 7.18245 7.24015 7.43315 7.57110 7.77524 7.88111 8.08188 8.20894 8.54138 9.05783 9.62441 11.10554 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005584 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.759187 B = 5013.315981 C = 6039.454344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.137 4.137 4 C 0.097 3.903 5 H 0.067 0.933 6 C 0.047 3.953 7 N -0.518 5.518 8 C 0.180 3.820 9 C -0.504 4.504 10 H 0.062 0.938 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.132 3.868 18 C -0.021 4.021 19 C -0.202 4.202 20 C -0.215 4.215 21 C -0.070 4.070 22 O -0.168 6.168 23 O -0.371 6.371 24 C 0.026 3.974 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.190 0.810 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 -9.585 -7.864 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.175 4.175 4 C 0.039 3.961 5 H 0.086 0.914 6 C -0.082 4.082 7 N -0.240 5.240 8 C 0.055 3.945 9 C -0.542 4.542 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.198 1.198 17 C 0.003 3.997 18 C -0.073 4.073 19 C -0.222 4.222 20 C -0.234 4.234 21 C -0.138 4.138 22 O -0.064 6.064 23 O -0.289 6.289 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.167 0.833 40 H 0.155 0.845 41 H 0.207 0.793 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.667 -9.929 -7.591 15.801 hybrid contribution 0.796 1.001 0.017 1.279 sum -8.871 -8.928 -7.574 14.689 Atomic orbital electron populations 1.21766 0.96138 1.01181 1.01723 1.21602 0.95621 0.97213 1.01839 1.22063 0.95966 0.96896 1.02582 1.22250 0.91646 0.95089 0.87109 0.91444 1.22345 0.90623 0.94393 1.00790 1.62517 1.02700 1.38077 1.20709 1.19948 0.95951 0.84279 0.94273 1.21123 0.97981 0.98543 1.36596 0.91998 1.24950 0.98060 0.95211 0.96221 1.69960 1.37254 1.03206 1.43255 0.86562 0.84827 0.78075 0.78333 1.20785 1.21363 1.19811 1.21199 0.99996 0.95013 0.83452 1.23868 0.88109 1.00278 0.95023 1.21789 1.03930 0.95820 1.00663 1.21793 0.98281 1.01714 1.01627 1.23816 1.02414 0.87598 0.99990 1.84134 1.43182 1.38375 1.40676 1.87975 1.82553 1.25116 1.33278 1.22848 0.98463 0.83850 1.01948 0.92846 0.93114 0.92853 0.91587 0.92350 0.91248 0.91355 0.93931 0.90511 0.97414 0.95400 0.93012 0.88246 0.88804 0.83326 0.84453 0.79317 0.93709 0.94418 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.35 5.09 -26.73 -0.14 -1.49 16 3 C -0.14 -1.75 4.92 -26.73 -0.13 -1.88 16 4 C 0.10 1.48 2.49 -26.73 -0.07 1.41 16 5 H 0.07 1.04 7.62 -51.93 -0.40 0.64 16 6 C 0.05 0.88 4.68 -3.82 -0.02 0.86 16 7 N -0.52 -11.03 4.59 -237.51 -1.09 -12.12 16 8 C 0.18 4.61 4.60 -4.97 -0.02 4.59 16 9 C -0.50 -13.79 8.56 -34.44 -0.29 -14.09 16 10 H 0.06 1.67 7.42 -52.49 -0.39 1.28 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.40 13.28 55.43 0.74 -25.66 16 13 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.13 2.62 5.43 -4.98 -0.03 2.59 16 18 C -0.02 -0.41 4.95 -35.62 -0.18 -0.59 16 19 C -0.20 -4.13 9.15 -39.70 -0.36 -4.49 16 20 C -0.21 -3.77 10.91 -39.70 -0.43 -4.21 16 21 C -0.07 -1.13 12.09 29.42 0.36 -0.78 16 22 O -0.17 -3.15 9.59 5.72 0.05 -3.09 16 23 O -0.37 -5.67 7.51 -35.23 -0.26 -5.93 16 24 C 0.03 0.31 9.90 101.05 1.00 1.31 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.73 6.14 -51.93 -0.32 0.41 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.85 5.77 -51.93 -0.30 0.55 16 33 H 0.08 1.43 7.66 -51.93 -0.40 1.03 16 34 H 0.01 0.22 5.68 -51.93 -0.30 -0.07 16 35 H 0.03 0.77 7.69 -51.93 -0.40 0.38 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.10 2.07 7.09 -51.93 -0.37 1.71 16 38 H 0.09 1.71 5.06 -51.93 -0.26 1.45 16 39 H 0.15 3.27 8.02 -52.49 -0.42 2.85 16 40 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.19 2.23 8.06 -52.48 -0.42 1.81 16 42 H 0.04 0.55 8.02 -51.93 -0.42 0.14 16 43 H 0.04 0.40 5.82 -51.93 -0.30 0.09 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -30.17 347.39 -7.60 -37.77 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.21 Total: 3.71 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.04 Total: -16.31 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.35 Total: -37.78 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.21 Total: -9.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.17 -7.60 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.001 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds