Wall clock time and date at job start Tue Mar 31 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46999 * 2 1 4 4 C 1.53001 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46893 * 55.00405 * 4 3 2 6 6 C 1.52996 * 109.47182 * 174.99848 * 4 3 2 7 7 N 1.46898 * 109.47543 * 295.87885 * 6 4 3 8 8 C 1.46905 * 111.00491 * 163.71346 * 7 6 4 9 9 C 1.50702 * 109.47354 * 195.78093 * 8 7 6 10 10 H 1.08002 * 119.99745 * 5.07290 * 9 8 7 11 11 C 1.37873 * 119.99688 * 185.07324 * 9 8 7 12 12 N 1.31516 * 120.00207 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99633 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47069 * 89.99727 * 13 11 9 15 15 H 1.48494 * 109.46804 * 209.99852 * 13 11 9 16 16 H 1.48504 * 109.46865 * 329.99567 * 13 11 9 17 17 C 1.46902 * 110.99995 * 287.66779 * 7 6 4 18 18 C 1.50697 * 109.47172 * 301.28923 * 17 7 6 19 19 C 1.34513 * 125.79109 * 95.22825 * 18 17 7 20 20 C 1.41383 * 106.84115 * 179.97438 * 19 18 17 21 21 C 1.34519 * 106.83764 * 359.97438 * 20 19 18 22 22 O 1.34306 * 108.42452 * 359.73788 * 21 20 19 23 23 O 1.42895 * 109.47283 * 295.00180 * 4 3 2 24 24 C 1.42904 * 114.00153 * 154.01910 * 23 4 3 25 25 H 1.09008 * 109.47009 * 60.00319 * 1 2 3 26 26 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47701 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47110 * 239.99810 * 2 1 3 29 29 H 1.09000 * 109.46927 * 119.99994 * 2 1 3 30 30 H 1.09000 * 109.47344 * 59.99953 * 3 2 1 31 31 H 1.09000 * 109.47276 * 299.99780 * 3 2 1 32 32 H 1.09000 * 109.47371 * 55.87710 * 6 4 3 33 33 H 1.09000 * 109.47151 * 175.87915 * 6 4 3 34 34 H 1.08999 * 109.46753 * 315.78045 * 8 7 6 35 35 H 1.09003 * 109.46857 * 75.78014 * 8 7 6 36 36 H 0.97002 * 119.99606 * 180.02562 * 12 11 9 37 37 H 1.09008 * 109.46837 * 61.28920 * 17 7 6 38 38 H 1.09001 * 109.47148 * 181.28247 * 17 7 6 39 39 H 1.08000 * 126.58062 * 359.96493 * 19 18 17 40 40 H 1.07998 * 126.57908 * 179.97438 * 20 19 18 41 41 H 1.07998 * 125.78599 * 180.02562 * 21 20 19 42 42 H 1.09005 * 109.47193 * 295.53854 * 24 23 4 43 43 H 1.08999 * 109.46878 * 55.53183 * 24 23 4 44 44 H 1.08990 * 109.47715 * 175.53584 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0800 2.8794 -0.1251 7 7 3.6739 3.4313 -1.4245 8 6 3.7962 4.8952 -1.4362 9 6 3.0258 5.4544 -2.6046 10 1 2.4316 4.7982 -3.2233 11 6 3.0796 6.8035 -2.8835 12 7 3.8028 7.6025 -2.1298 13 14 2.1241 7.4967 -4.3314 14 1 0.7663 7.8965 -3.8825 15 1 2.8359 8.6825 -4.8720 16 1 2.0107 6.4620 -5.3905 17 6 4.4492 2.8295 -2.5176 18 6 5.9171 3.0854 -2.2924 19 6 6.7798 2.2436 -1.6954 20 6 8.0419 2.8808 -1.6979 21 6 7.8750 4.0737 -2.2967 22 8 6.5872 4.1897 -2.6603 23 8 4.0458 0.8733 1.2219 24 6 5.3460 0.2887 1.1230 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6573 3.4864 0.6755 33 1 5.1674 2.8868 -0.0512 34 1 3.3936 5.3008 -0.5081 35 1 4.8466 5.1713 -1.5281 36 1 3.8403 8.5518 -2.3259 37 1 4.2673 1.7550 -2.5432 38 1 4.1443 3.2723 -3.4658 39 1 6.5521 1.2682 -1.2915 40 1 8.9632 2.4857 -1.2960 41 1 8.6466 4.8110 -2.4618 42 1 5.3117 -0.5602 0.4400 43 1 6.0500 1.0303 0.7455 44 1 5.6681 -0.0500 2.1076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:10 Heat of formation + Delta-G solvation = -38.638964 kcal Electronic energy + Delta-G solvation = -23394.707740 eV Core-core repulsion = 20120.790930 eV Total energy + Delta-G solvation = -3273.916810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11957 -38.65440 -36.42525 -34.40766 -32.76801 -32.35678 -30.44307 -29.44684 -27.09713 -26.30002 -25.95720 -24.15247 -21.66278 -21.18544 -21.06028 -20.61985 -19.33601 -16.99052 -16.66329 -16.11965 -15.93327 -15.19878 -14.95708 -14.69551 -14.42126 -14.15298 -13.87288 -13.69457 -13.18351 -13.00641 -12.57759 -12.39044 -12.22571 -12.18134 -11.97775 -11.78350 -11.31258 -11.25392 -11.07550 -10.88032 -10.73571 -10.60121 -10.56749 -10.40774 -10.12354 -9.93529 -9.56360 -9.45081 -9.04397 -8.41233 -8.04838 -7.45348 -6.00127 -4.01623 2.22464 2.98669 3.33255 3.39287 3.42317 3.56049 3.96472 4.44542 4.92254 4.99938 5.17674 5.26223 5.32445 5.35303 5.37004 5.37957 5.41622 5.43718 5.53947 5.67241 5.69802 5.78187 5.85209 6.00204 6.07826 6.11766 6.14659 6.21447 6.23793 6.34712 6.39532 6.44628 6.50332 6.58211 6.77221 6.89843 7.15754 7.38314 7.44200 7.66565 7.80207 7.98454 8.12205 8.48428 9.05007 9.62200 11.10498 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.006697 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.940812 B = 4180.182478 C = 5978.146474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.097 3.903 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.512 5.512 8 C 0.187 3.813 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.129 3.871 18 C -0.012 4.012 19 C -0.231 4.231 20 C -0.223 4.223 21 C -0.049 4.049 22 O -0.150 6.150 23 O -0.385 6.385 24 C 0.029 3.971 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.011 0.989 36 H 0.260 0.740 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.193 0.807 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -13.960 2.926 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.145 4.145 4 C 0.039 3.961 5 H 0.072 0.928 6 C -0.107 4.107 7 N -0.236 5.236 8 C 0.062 3.938 9 C -0.544 4.544 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.199 1.199 17 C 0.000 4.000 18 C -0.065 4.065 19 C -0.251 4.251 20 C -0.242 4.242 21 C -0.118 4.118 22 O -0.044 6.044 23 O -0.304 6.304 24 C -0.068 4.068 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.210 0.790 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.824 -13.621 2.910 14.212 hybrid contribution 1.018 0.636 -0.607 1.345 sum 3.842 -12.985 2.303 13.736 Atomic orbital electron populations 1.21760 0.96221 1.00877 1.01948 1.21498 0.95475 0.97474 1.01464 1.21639 0.92479 0.96390 1.03975 1.22148 0.95198 0.93091 0.85641 0.92793 1.22679 0.98755 0.95648 0.93638 1.62482 1.50558 1.10150 1.00367 1.19904 0.96821 0.79144 0.97884 1.21089 1.28244 0.92600 1.12488 0.91842 1.24955 0.95600 0.97085 0.96723 1.69965 1.40258 1.04374 1.38949 0.86537 0.79873 0.78540 0.82676 1.20695 1.21416 1.19853 1.21057 0.80660 0.99460 0.98782 1.23918 0.96859 0.85289 1.00462 1.21505 0.93143 1.01802 1.08689 1.21671 0.98901 0.96403 1.07259 1.24002 0.84954 0.99554 1.03258 1.84311 1.19569 1.38333 1.62175 1.87889 1.32398 1.75931 1.34142 1.22772 0.85451 0.96730 1.01862 0.92604 0.93415 0.92877 0.92766 0.92068 0.91679 0.88645 0.90677 0.94327 0.95626 0.97096 0.93018 0.89621 0.88128 0.84542 0.84295 0.78977 0.94549 0.93792 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.51 5.83 -26.74 -0.16 -1.66 16 3 C -0.11 -1.58 4.86 -26.73 -0.13 -1.71 16 4 C 0.10 1.47 2.19 -26.73 -0.06 1.41 16 5 H 0.05 0.78 6.40 -51.93 -0.33 0.44 16 6 C 0.02 0.39 4.47 -3.83 -0.02 0.38 16 7 N -0.51 -10.43 3.94 -237.51 -0.94 -11.37 16 8 C 0.19 4.77 4.62 -4.97 -0.02 4.75 16 9 C -0.51 -13.86 8.45 -34.44 -0.29 -14.15 16 10 H 0.06 1.71 7.68 -52.49 -0.40 1.30 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 13 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.13 2.39 5.61 -4.98 -0.03 2.36 16 18 C -0.01 -0.22 4.94 -35.63 -0.18 -0.40 16 19 C -0.23 -3.73 9.28 -39.70 -0.37 -4.10 16 20 C -0.22 -3.40 10.91 -39.70 -0.43 -3.83 16 21 C -0.05 -0.81 12.09 29.42 0.36 -0.45 16 22 O -0.15 -3.11 9.45 5.69 0.05 -3.06 16 23 O -0.39 -5.73 9.90 -35.23 -0.35 -6.08 16 24 C 0.03 0.34 10.80 101.05 1.09 1.43 16 25 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.53 7.59 -51.93 -0.39 1.14 16 32 H 0.07 1.47 7.72 -51.93 -0.40 1.07 16 33 H 0.04 0.72 4.93 -51.93 -0.26 0.47 16 34 H 0.03 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.01 0.31 6.03 -51.93 -0.31 0.00 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 1.32 6.69 -51.92 -0.35 0.97 16 38 H 0.10 2.02 7.27 -51.93 -0.38 1.64 16 39 H 0.14 1.91 7.00 -52.49 -0.37 1.54 16 40 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 0.54 6.27 -51.93 -0.33 0.22 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.32 351.39 -7.45 -37.77 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.26 Total: 2.52 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 0.04 Total: -15.78 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.20 Total: -37.20 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.29 Total: -9.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.32 -7.45 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.868 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds