Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 O 1.45195 * 109.47026 * 119.99932 * 2 1 3 5 5 C 1.34234 * 117.00010 * 149.99708 * 4 2 1 6 6 O 1.20824 * 119.99719 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00178 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.90727 * 59.65155 * 7 5 4 9 9 C 1.53991 * 109.92048 * 298.55038 * 7 5 4 10 10 C 1.54599 * 105.14355 * 239.42080 * 9 7 5 11 11 C 1.54931 * 103.07676 * 337.95424 * 10 9 7 12 12 N 1.47901 * 109.92134 * 180.95856 * 7 5 4 13 13 C 1.46899 * 111.00225 * 265.20316 * 12 7 5 14 14 C 1.52998 * 109.47395 * 163.74515 * 13 12 7 15 15 C 1.50706 * 115.54538 * 280.27852 * 14 13 12 16 16 H 1.07994 * 119.99747 * 144.41754 * 15 14 13 17 17 C 1.37877 * 119.99940 * 324.41921 * 15 14 13 18 18 N 1.31513 * 120.00176 * 338.93175 * 17 15 14 19 19 Si 1.86802 * 120.00066 * 158.94070 * 17 15 14 20 20 H 1.48503 * 109.47048 * 59.99110 * 19 17 15 21 21 H 1.48502 * 109.47327 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46957 * 299.99431 * 19 17 15 23 23 C 1.52995 * 117.49977 * 134.57162 * 14 13 12 24 24 C 1.52998 * 117.49999 * 65.94613 * 14 13 12 25 25 H 1.08994 * 109.47165 * 300.00003 * 1 2 3 26 26 H 1.08997 * 109.46912 * 60.00049 * 1 2 3 27 27 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46868 * 240.00166 * 2 1 3 29 29 H 1.08994 * 109.47060 * 59.99933 * 3 2 1 30 30 H 1.08994 * 109.47334 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47104 * 300.00336 * 3 2 1 32 32 H 1.09004 * 110.31107 * 120.49871 * 9 7 5 33 33 H 1.09006 * 110.31125 * 358.33623 * 9 7 5 34 34 H 1.09007 * 110.72070 * 96.39484 * 10 9 7 35 35 H 1.08992 * 110.72500 * 219.50674 * 10 9 7 36 36 H 1.09005 * 110.66946 * 155.93877 * 11 10 9 37 37 H 1.09007 * 110.66986 * 279.06294 * 11 10 9 38 38 H 1.09005 * 109.46391 * 283.74344 * 13 12 7 39 39 H 1.08999 * 109.47186 * 43.73857 * 13 12 7 40 40 H 0.96996 * 120.00740 * 185.44209 * 18 17 15 41 41 H 1.08996 * 117.49782 * 359.97438 * 23 14 13 42 42 H 1.09004 * 117.49809 * 145.02000 * 23 14 13 43 43 H 1.09002 * 117.49582 * 214.98335 * 24 14 13 44 44 H 1.08998 * 117.50072 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 3.1936 -1.3170 1.0851 6 8 3.8018 -1.2990 0.0412 7 6 3.7600 -2.0487 2.2746 8 1 3.0693 -2.8294 2.5933 9 6 4.0047 -1.0610 3.4303 10 6 5.5185 -1.1565 3.7295 11 6 5.9020 -2.5442 3.1573 12 7 5.0695 -2.6409 1.9253 13 6 4.9187 -4.0391 1.5008 14 6 6.1871 -4.4913 0.7745 15 6 6.3034 -4.0547 -0.6632 16 1 7.2689 -3.7978 -1.0731 17 6 5.1771 -3.9832 -1.4552 18 7 4.0992 -4.6622 -1.1284 19 14 5.1821 -2.9221 -2.9926 20 1 6.2421 -3.3965 -3.9181 21 1 3.8607 -3.0167 -3.6637 22 1 5.4476 -1.5097 -2.6183 23 6 6.7656 -5.8577 1.1474 24 6 7.4769 -4.5783 1.5929 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 3.4266 -1.3536 4.3069 33 1 3.7427 -0.0481 3.1243 34 1 6.0636 -0.3639 3.2170 35 1 5.7027 -1.1176 4.8030 36 1 6.9636 -2.5793 2.9122 37 1 5.6422 -3.3356 3.8605 38 1 4.7569 -4.6688 2.3757 39 1 4.0649 -4.1247 0.8287 40 1 3.3347 -4.6753 -1.7252 41 1 6.2429 -6.4343 1.9105 42 1 7.2305 -6.4412 0.3527 43 1 8.4095 -4.3202 1.0913 44 1 7.4217 -4.3139 2.6489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602793240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = -48.267777 kcal Electronic energy + Delta-G solvation = -24019.314282 eV Core-core repulsion = 20744.979936 eV Total energy + Delta-G solvation = -3274.334347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14945 -38.38506 -36.22865 -35.77084 -32.91274 -31.99131 -31.01752 -29.18690 -27.23283 -25.75337 -24.67095 -23.11273 -21.34132 -20.88725 -20.52802 -19.57080 -18.92273 -17.23321 -16.27399 -15.99327 -15.52167 -14.87246 -14.54840 -14.48532 -14.07015 -13.62192 -13.33072 -13.11635 -13.00500 -12.79894 -12.33456 -12.27292 -12.11161 -11.83475 -11.60330 -11.34958 -11.13626 -11.04586 -10.82443 -10.74450 -10.68200 -10.53356 -10.33837 -10.13796 -10.10996 -9.92202 -9.57378 -9.14826 -8.96005 -8.55071 -7.82183 -7.55372 -5.90020 -3.81215 2.96760 3.02580 3.47138 3.51360 3.66331 4.58048 4.61428 4.89184 4.90444 4.95986 5.04346 5.15941 5.25965 5.28746 5.35037 5.54232 5.59925 5.73148 5.74217 5.78361 5.86116 5.93679 5.98056 6.04361 6.09732 6.10467 6.20804 6.22330 6.30833 6.40942 6.48227 6.63659 6.76224 6.77510 6.97669 7.03248 7.11040 7.42732 7.55468 7.82371 7.98486 8.16782 8.56627 8.64496 9.07867 9.75959 11.14834 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.008429 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.492403 B = 3321.187702 C = 4746.953187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 C -0.167 4.167 4 O -0.366 6.366 5 C 0.455 3.545 6 O -0.451 6.451 7 C 0.080 3.920 8 H 0.078 0.922 9 C -0.116 4.116 10 C -0.125 4.125 11 C 0.036 3.964 12 N -0.474 5.474 13 C 0.077 3.923 14 C 0.077 3.923 15 C -0.477 4.477 16 H 0.055 0.945 17 C 0.094 3.906 18 N -0.879 5.879 19 Si 0.888 3.112 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.268 1.268 23 C -0.208 4.208 24 C -0.214 4.214 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.001 0.999 39 H 0.124 0.876 40 H 0.258 0.742 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 8.835 8.629 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.285 6.285 5 C 0.294 3.706 6 O -0.332 6.332 7 C -0.031 4.031 8 H 0.096 0.904 9 C -0.154 4.154 10 C -0.163 4.163 11 C -0.091 4.091 12 N -0.199 5.199 13 C -0.049 4.049 14 C 0.076 3.924 15 C -0.513 4.513 16 H 0.073 0.927 17 C -0.109 4.109 18 N -0.517 5.517 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.193 1.193 23 C -0.247 4.247 24 C -0.251 4.251 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.142 0.858 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.577 9.151 7.775 13.240 hybrid contribution -0.370 -0.025 -0.337 0.502 sum -5.947 9.126 7.437 13.190 Atomic orbital electron populations 1.21850 0.92989 1.02997 1.02499 1.22566 0.94462 0.92492 0.88096 1.22175 1.02354 0.95538 1.02336 1.86521 1.37849 1.63558 1.40571 1.23588 0.78974 0.77431 0.90611 1.90742 1.57980 1.55152 1.29290 1.21801 0.94453 0.96626 0.90178 0.90416 1.22318 0.97363 0.99166 0.96565 1.22543 0.95065 0.98563 1.00164 1.23511 1.00073 0.95019 0.90495 1.64312 1.06861 1.20495 1.28212 1.22205 1.03146 0.83203 0.96392 1.18711 0.87655 0.92330 0.93723 1.20263 0.93288 1.44428 0.93342 0.92677 1.24674 0.95006 0.93745 0.97456 1.69789 1.05889 1.39019 1.36990 0.86725 0.76313 0.83094 0.82154 1.21245 1.21961 1.19350 1.23026 1.07094 0.92306 1.02248 1.22980 0.99071 1.04553 0.98544 0.91741 0.90870 0.91751 0.89910 0.91927 0.91867 0.91239 0.90714 0.90864 0.90792 0.91309 0.88973 0.94432 0.98076 0.85843 0.93220 0.92225 0.90534 0.90948 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.57 37.16 0.36 -1.33 16 2 C 0.08 1.20 3.18 -26.73 -0.09 1.11 16 3 C -0.17 -2.16 9.55 37.16 0.35 -1.81 16 4 O -0.37 -6.30 9.82 -39.27 -0.39 -6.68 16 5 C 0.46 9.19 7.06 36.00 0.25 9.44 16 6 O -0.45 -10.98 15.68 -18.75 -0.29 -11.27 16 7 C 0.08 1.47 2.89 -67.80 -0.20 1.27 16 8 H 0.08 1.38 7.78 -51.93 -0.40 0.97 16 9 C -0.12 -1.63 6.53 -25.37 -0.17 -1.80 16 10 C -0.13 -1.73 7.05 -24.87 -0.18 -1.91 16 11 C 0.04 0.62 5.10 -1.64 -0.01 0.61 16 12 N -0.47 -9.99 4.35 -223.54 -0.97 -10.96 16 13 C 0.08 1.83 4.53 -3.83 -0.02 1.82 16 14 C 0.08 1.95 1.94 -155.66 -0.30 1.65 16 15 C -0.48 -13.66 8.98 -34.44 -0.31 -13.97 16 16 H 0.06 1.61 7.90 -52.49 -0.41 1.19 16 17 C 0.09 2.69 5.06 -17.82 -0.09 2.59 16 18 N -0.88 -25.29 11.07 55.43 0.61 -24.68 16 19 Si 0.89 23.27 29.59 -169.99 -5.03 18.24 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.21 -4.89 9.88 -26.73 -0.26 -5.15 16 24 C -0.21 -4.75 8.78 -26.73 -0.23 -4.98 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.47 7.16 -51.93 -0.37 1.10 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.64 6.17 -51.93 -0.32 1.31 16 37 H 0.04 0.61 7.74 -51.93 -0.40 0.21 16 38 H 0.00 0.03 7.51 -51.93 -0.39 -0.36 16 39 H 0.12 3.33 5.23 -51.93 -0.27 3.06 16 40 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 41 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.07 1.35 5.86 -51.93 -0.30 1.05 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -31.42 350.92 -9.15 -40.56 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.48 Total: 1.96 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.88 Total: -12.45 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.36 Total: -35.64 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.68 Total: -17.95 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.03 Total: 18.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.42 -9.15 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602793240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.706 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds