Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.05327 * 2 1 4 4 O 1.43908 * 109.90952 * 238.81186 * 2 1 3 5 5 C 1.44418 * 106.99955 * 214.25526 * 4 2 1 6 6 C 1.55098 * 103.56531 * 39.75156 * 5 4 2 7 7 C 1.53587 * 109.91257 * 121.18985 * 2 1 3 8 8 C 1.52468 * 110.46861 * 3.06548 * 7 2 1 9 9 N 1.47126 * 109.27950 * 181.80836 * 8 7 2 10 10 C 1.46908 * 110.99686 * 181.33736 * 9 8 7 11 11 C 1.52998 * 109.47181 * 304.16091 * 10 9 8 12 12 C 1.50706 * 115.54569 * 67.76083 * 11 10 9 13 13 H 1.08009 * 119.99693 * 220.21657 * 12 11 10 14 14 C 1.37871 * 120.00380 * 39.93869 * 12 11 10 15 15 N 1.31517 * 119.99683 * 354.76024 * 14 12 11 16 16 Si 1.86796 * 120.00153 * 174.76596 * 14 12 11 17 17 H 1.48503 * 109.47444 * 53.98132 * 16 14 12 18 18 H 1.48504 * 109.47337 * 173.97963 * 16 14 12 19 19 H 1.48497 * 109.47118 * 293.97809 * 16 14 12 20 20 C 1.52999 * 117.51870 * 213.45600 * 11 10 9 21 21 C 1.52996 * 117.50472 * 282.08798 * 11 10 9 22 22 C 1.47000 * 110.69841 * 57.60653 * 9 8 7 23 23 C 1.53103 * 109.37125 * 300.91998 * 22 9 8 24 24 O 1.42332 * 110.57660 * 240.05140 * 7 2 1 25 25 H 1.09000 * 109.47513 * 302.02585 * 1 2 3 26 26 H 1.09002 * 109.47280 * 62.02737 * 1 2 3 27 27 H 1.09002 * 109.46943 * 182.02053 * 1 2 3 28 28 H 1.09001 * 110.60662 * 281.23030 * 5 4 2 29 29 H 1.09001 * 110.73388 * 158.33790 * 5 4 2 30 30 H 1.09007 * 110.93116 * 205.21930 * 6 5 4 31 31 H 1.09000 * 110.96325 * 81.56673 * 6 5 4 32 32 H 1.08998 * 109.50312 * 61.86593 * 8 7 2 33 33 H 1.09005 * 109.50445 * 301.74602 * 8 7 2 34 34 H 1.09003 * 109.46430 * 184.16341 * 10 9 8 35 35 H 1.08995 * 109.47301 * 64.16702 * 10 9 8 36 36 H 0.96999 * 119.99898 * 184.98258 * 15 14 12 37 37 H 1.09003 * 117.49753 * 214.97276 * 20 11 10 38 38 H 1.08991 * 117.49640 * 359.97438 * 20 11 10 39 39 H 1.09007 * 117.49378 * 359.97438 * 21 11 10 40 40 H 1.09001 * 117.50180 * 144.96976 * 21 11 10 41 41 H 1.08998 * 109.48816 * 60.88761 * 22 9 8 42 42 H 1.08989 * 109.48854 * 180.95219 * 22 9 8 43 43 H 1.08998 * 109.51245 * 177.24832 * 23 22 9 44 44 H 1.09001 * 109.51166 * 297.41170 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 8 2.0201 -0.7007 -1.1575 5 6 3.2371 -1.3700 -0.7620 6 6 2.9193 -1.8901 0.6642 7 6 2.0531 -0.7478 1.2353 8 6 0.8936 -1.3244 2.0402 9 7 1.4206 -1.9965 3.2381 10 6 0.3349 -2.5946 4.0267 11 6 -0.6928 -1.5173 4.3789 12 6 -1.4778 -0.9635 3.2178 13 1 -1.6932 0.0937 3.1668 14 6 -1.9161 -1.8054 2.2177 15 7 -1.5625 -3.0721 2.2227 16 14 -3.0119 -1.1468 0.8558 17 1 -2.3624 0.0292 0.2229 18 1 -3.2229 -2.2045 -0.1649 19 1 -4.3215 -0.7414 1.4266 20 6 -1.4119 -1.6392 5.7239 21 6 -0.3483 -0.5584 5.5202 22 6 2.2105 -1.0622 4.0530 23 6 3.3708 -0.5152 3.2172 24 8 2.8489 0.1136 2.0418 25 1 -0.3634 0.5450 0.8712 26 1 -0.3634 0.4820 -0.9076 27 1 -0.3633 -1.0271 0.0362 28 1 4.0705 -0.6678 -0.7374 29 1 3.4565 -2.2004 -1.4332 30 1 3.8328 -2.0144 1.2459 31 1 2.3564 -2.8225 0.6228 32 1 0.3488 -2.0440 1.4291 33 1 0.2229 -0.5192 2.3402 34 1 0.7436 -3.0205 4.9431 35 1 -0.1470 -3.3800 3.4444 36 1 -1.8101 -3.6476 1.4822 37 1 -2.4528 -1.3187 5.7689 38 1 -1.1532 -2.4872 6.3578 39 1 0.6105 -0.6953 6.0205 40 1 -0.6889 0.4732 5.4311 41 1 1.5762 -0.2376 4.3782 42 1 2.6047 -1.5839 4.9249 43 1 3.9293 0.2146 3.8033 44 1 4.0302 -1.3342 2.9299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -32.423397 kcal Electronic energy + Delta-G solvation = -25349.734409 eV Core-core repulsion = 22076.087126 eV Total energy + Delta-G solvation = -3273.647283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34330 -38.00372 -36.66480 -33.71675 -32.83088 -31.85777 -30.84368 -28.65901 -26.36970 -25.95794 -24.38805 -23.51825 -21.89987 -21.33803 -20.73287 -19.17218 -18.33576 -16.69860 -16.36409 -15.53530 -15.41692 -14.91581 -14.89404 -14.45919 -14.17675 -13.72059 -13.59781 -13.40925 -12.82883 -12.51593 -12.38849 -12.06738 -12.00441 -11.51621 -11.34031 -11.14982 -11.00175 -10.80648 -10.64181 -10.56607 -10.42499 -10.39016 -10.25624 -9.82438 -9.81019 -9.51207 -9.23848 -8.99126 -8.91441 -8.80707 -8.14881 -7.12315 -6.05246 -4.14746 3.20176 3.28152 3.31486 4.09073 4.23821 4.25707 4.76209 4.97792 5.09886 5.31560 5.37657 5.41671 5.55657 5.60530 5.69407 5.73469 5.80976 5.90114 5.94906 6.04890 6.14619 6.17280 6.25306 6.32904 6.42873 6.45736 6.46566 6.50773 6.59326 6.65978 6.70116 6.80871 6.88756 7.00352 7.16755 7.21718 7.35160 7.49970 7.55787 7.79848 7.95286 8.14579 8.24268 8.46727 8.72916 9.37164 10.81676 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.010494 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.192883 B = 2667.651924 C = 3863.137219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.090 3.910 3 H 0.072 0.928 4 O -0.376 6.376 5 C 0.046 3.954 6 C -0.166 4.166 7 C 0.084 3.916 8 C 0.030 3.970 9 N -0.519 5.519 10 C 0.075 3.925 11 C 0.022 3.978 12 C -0.480 4.480 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.875 3.125 17 H -0.256 1.256 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.202 4.202 21 C -0.213 4.213 22 C 0.005 3.995 23 C 0.066 3.934 24 O -0.378 6.378 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.144 0.856 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 2.213 -1.526 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.090 0.910 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.204 4.204 7 C 0.044 3.956 8 C -0.097 4.097 9 N -0.242 5.242 10 C -0.052 4.052 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.077 0.923 14 C -0.128 4.128 15 N -0.511 5.511 16 Si 0.702 3.298 17 H -0.180 1.180 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.241 4.241 21 C -0.250 4.250 22 C -0.123 4.123 23 C -0.011 4.011 24 O -0.297 6.297 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.974 1.814 -2.039 8.428 hybrid contribution -0.964 0.721 0.201 1.220 sum 7.010 2.535 -1.838 7.677 Atomic orbital electron populations 1.22222 0.92199 1.03754 1.02235 1.22543 0.95556 0.95433 0.83219 0.91026 1.88896 1.39844 1.67696 1.33099 1.23518 0.87715 0.95932 0.95906 1.23550 1.01041 1.00090 0.95686 1.22716 0.92039 0.89233 0.91566 1.23309 0.93382 1.01537 0.91455 1.62694 1.23848 1.30795 1.06891 1.22363 0.88359 0.98496 0.95961 1.19803 0.96027 0.95021 0.87135 1.20384 1.32421 0.93848 1.05031 0.92324 1.24898 0.95447 0.94687 0.97806 1.69540 1.45202 1.04840 1.31498 0.87065 0.81301 0.79769 0.81647 1.18047 1.20956 1.20821 1.22900 0.96219 0.99492 1.05503 1.22926 0.98229 0.95350 1.08496 1.22872 0.96098 0.96957 0.96418 1.22654 0.95381 0.96893 0.86183 1.87794 1.68248 1.38133 1.35546 0.89871 0.92812 0.91005 0.92729 0.89564 0.90257 0.89318 0.88178 0.88226 0.95661 0.83923 0.92397 0.90715 0.91786 0.91429 0.91039 0.92861 0.91739 0.89730 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 5.86 37.16 0.22 -2.59 16 2 C 0.09 1.67 3.88 -26.43 -0.10 1.57 16 3 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 4 O -0.38 -6.84 11.20 -35.23 -0.39 -7.23 16 5 C 0.05 0.70 7.73 38.27 0.30 1.00 16 6 C -0.17 -2.78 5.98 -24.93 -0.15 -2.93 16 7 C 0.08 1.58 0.99 -89.90 -0.09 1.49 16 8 C 0.03 0.64 1.36 -3.97 -0.01 0.63 16 9 N -0.52 -10.67 4.73 -234.62 -1.11 -11.78 16 10 C 0.08 1.69 5.14 -3.82 -0.02 1.67 16 11 C 0.02 0.50 1.50 -155.66 -0.23 0.27 16 12 C -0.48 -11.75 5.86 -34.44 -0.20 -11.95 16 13 H 0.06 1.48 7.82 -52.48 -0.41 1.06 16 14 C 0.07 1.79 3.48 -17.82 -0.06 1.73 16 15 N -0.87 -21.74 9.13 55.43 0.51 -21.24 16 16 Si 0.88 19.26 26.67 -169.99 -4.53 14.73 16 17 H -0.26 -5.27 5.29 56.52 0.30 -4.97 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.20 -4.44 9.91 -26.73 -0.26 -4.70 16 21 C -0.21 -4.46 7.94 -26.73 -0.21 -4.67 16 22 C 0.01 0.10 4.61 -3.72 -0.02 0.08 16 23 C 0.07 1.07 6.73 37.21 0.25 1.32 16 24 O -0.38 -7.00 10.22 -35.23 -0.36 -7.36 16 25 H 0.08 1.64 6.55 -51.93 -0.34 1.30 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.48 4.53 -51.93 -0.24 1.24 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.24 6.20 -51.92 -0.32 0.92 16 31 H 0.09 1.59 7.78 -51.93 -0.40 1.19 16 32 H 0.10 2.32 4.66 -51.93 -0.24 2.08 16 33 H 0.10 2.31 3.40 -51.93 -0.18 2.13 16 34 H 0.02 0.54 8.00 -51.93 -0.42 0.13 16 35 H 0.14 3.56 5.14 -51.93 -0.27 3.29 16 36 H 0.26 6.46 8.32 -40.82 -0.34 6.12 16 37 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.32 7.01 -51.92 -0.36 0.96 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.05 1.06 5.44 -51.93 -0.28 0.78 16 42 H 0.06 1.10 8.10 -51.94 -0.42 0.68 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -24.87 306.74 -8.69 -33.56 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.82 Total: 11.79 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.59 Total: -17.10 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: -0.60 Total: -33.01 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.75 Total: -14.59 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.53 Total: 14.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -24.87 -8.69 -33.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.134 kcal (2) G-P(sol) polarization free energy of solvation -24.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds