Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.05271 * 2 1 4 4 O 1.43899 * 109.90379 * 121.18032 * 2 1 3 5 5 C 1.44423 * 106.99688 * 145.73471 * 4 2 1 6 6 C 1.55102 * 103.55566 * 320.25943 * 5 4 2 7 7 C 1.53578 * 109.90903 * 238.82015 * 2 1 3 8 8 C 1.52473 * 110.44470 * 120.16245 * 7 2 1 9 9 N 1.47134 * 109.30583 * 181.85257 * 8 7 2 10 10 C 1.46900 * 110.99893 * 181.29790 * 9 8 7 11 11 C 1.53004 * 109.46909 * 182.56074 * 10 9 8 12 12 C 1.50700 * 115.54490 * 306.02686 * 11 10 9 13 13 H 1.08003 * 119.99762 * 144.26313 * 12 11 10 14 14 C 1.37872 * 120.00566 * 324.25795 * 12 11 10 15 15 N 1.31520 * 119.99527 * 351.49360 * 14 12 11 16 16 Si 1.86796 * 120.00512 * 171.49490 * 14 12 11 17 17 H 1.48498 * 109.46980 * 94.99336 * 16 14 12 18 18 H 1.48497 * 109.47251 * 214.99559 * 16 14 12 19 19 H 1.48507 * 109.47076 * 334.99668 * 16 14 12 20 20 C 1.52994 * 117.50000 * 160.35476 * 11 10 9 21 21 C 1.53002 * 117.49846 * 91.69393 * 11 10 9 22 22 C 1.47138 * 110.69602 * 57.58062 * 9 8 7 23 23 C 1.53094 * 109.31654 * 300.92452 * 22 9 8 24 24 O 1.42310 * 110.59626 * 357.11903 * 7 2 1 25 25 H 1.08993 * 109.47215 * 181.17476 * 1 2 3 26 26 H 1.09001 * 109.47232 * 301.17806 * 1 2 3 27 27 H 1.09004 * 109.46485 * 61.17547 * 1 2 3 28 28 H 1.08992 * 110.60996 * 78.78233 * 5 4 2 29 29 H 1.09003 * 110.60323 * 201.58919 * 5 4 2 30 30 H 1.09001 * 110.92871 * 278.45661 * 6 5 4 31 31 H 1.08994 * 110.93097 * 154.79239 * 6 5 4 32 32 H 1.09002 * 109.50422 * 301.80340 * 8 7 2 33 33 H 1.09005 * 109.49848 * 61.90188 * 8 7 2 34 34 H 1.09002 * 109.47006 * 302.55743 * 10 9 8 35 35 H 1.08993 * 109.47133 * 62.56078 * 10 9 8 36 36 H 0.96995 * 119.99680 * 185.00608 * 15 14 12 37 37 H 1.09000 * 117.50134 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49916 * 145.01922 * 20 11 10 39 39 H 1.08995 * 117.49646 * 214.97879 * 21 11 10 40 40 H 1.08997 * 117.50012 * 359.97438 * 21 11 10 41 41 H 1.09003 * 109.56031 * 180.94702 * 22 9 8 42 42 H 1.08999 * 109.47540 * 60.85443 * 22 9 8 43 43 H 1.09002 * 109.52144 * 297.39520 * 23 22 9 44 44 H 1.09006 * 109.51976 * 177.28049 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 8 2.0199 -0.7005 1.1576 5 6 3.2369 -1.3701 0.7621 6 6 2.9188 -1.8900 -0.6641 7 6 2.0530 -0.7476 -1.2354 8 6 2.9093 0.1765 -2.0942 9 7 3.3598 -0.5508 -3.2912 10 6 4.2153 0.2976 -4.1318 11 6 4.6108 -0.4698 -5.3950 12 6 5.2487 -1.8156 -5.1648 13 1 5.0484 -2.6313 -5.8438 14 6 6.0881 -2.0055 -4.0877 15 7 6.4655 -0.9778 -3.3589 16 14 6.6895 -3.7224 -3.6635 17 1 8.0180 -3.9497 -4.2869 18 1 6.8052 -3.8561 -2.1890 19 1 5.7233 -4.7264 -4.1773 20 6 5.0964 0.3464 -6.5945 21 6 3.7156 -0.3136 -6.6259 22 6 2.2092 -1.0593 -4.0545 23 6 1.3837 -1.9922 -3.1646 24 8 0.9726 -1.2831 -1.9911 25 1 -0.3633 -1.0274 0.0211 26 1 -0.3634 0.5320 0.8792 27 1 -0.3632 0.4955 -0.9004 28 1 4.0704 -0.6683 0.7376 29 1 3.4548 -2.1992 1.4355 30 1 2.3552 -2.8221 -0.6221 31 1 3.8321 -2.0148 -1.2458 32 1 2.3204 1.0430 -2.3951 33 1 3.7760 0.5063 -1.5212 34 1 3.6707 1.1998 -4.4103 35 1 5.1126 0.5714 -3.5771 36 1 7.1124 -1.0999 -2.6466 37 1 5.1345 1.4301 -6.4836 38 1 5.8771 -0.0902 -7.2174 39 1 3.5885 -1.1840 -7.2695 40 1 2.8447 0.3356 -6.5357 41 1 2.5639 -1.6085 -4.9267 42 1 1.5896 -0.2230 -4.3782 43 1 1.9893 -2.8518 -2.8772 44 1 0.5042 -2.3329 -3.7111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = -47.958506 kcal Electronic energy + Delta-G solvation = -24566.978634 eV Core-core repulsion = 21292.657699 eV Total energy + Delta-G solvation = -3274.320936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40655 -37.94492 -36.69316 -34.12728 -32.07673 -31.99019 -31.18903 -28.65930 -27.18212 -25.49672 -24.23571 -23.54257 -22.39792 -21.16257 -20.94197 -18.94331 -18.78597 -16.63828 -16.22627 -15.82748 -15.51732 -15.17548 -14.71327 -14.41173 -14.33066 -13.84457 -13.67342 -13.53535 -12.97717 -12.75440 -12.48017 -12.19822 -12.02422 -11.60979 -11.47102 -11.26473 -11.07781 -10.98330 -10.93951 -10.74992 -10.54029 -10.49293 -10.44665 -10.07553 -9.93656 -9.52648 -9.40718 -9.03899 -9.01094 -8.62941 -8.03981 -7.30153 -5.94168 -3.98581 3.28574 3.36967 3.40848 3.96637 4.04270 4.41313 4.50048 4.92189 5.01509 5.12669 5.19592 5.37021 5.48241 5.53865 5.57160 5.57892 5.69544 5.77766 5.80120 5.85982 5.97290 6.01987 6.08027 6.15262 6.18705 6.24736 6.28733 6.41311 6.49250 6.52593 6.57279 6.61805 6.64393 6.73059 6.91297 7.06496 7.12349 7.29408 7.54214 7.59272 7.96580 8.04364 8.11437 8.48628 8.95008 9.61941 11.06853 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.007350 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.610180 B = 3808.456044 C = 4605.952269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 H 0.074 0.926 4 O -0.377 6.377 5 C 0.048 3.952 6 C -0.171 4.171 7 C 0.099 3.901 8 C 0.039 3.961 9 N -0.490 5.490 10 C 0.104 3.896 11 C 0.064 3.936 12 C -0.480 4.480 13 H 0.054 0.946 14 C 0.092 3.908 15 N -0.871 5.871 16 Si 0.886 3.114 17 H -0.286 1.286 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.205 4.205 21 C -0.220 4.220 22 C 0.022 3.978 23 C 0.062 3.938 24 O -0.372 6.372 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.026 0.974 33 H 0.081 0.919 34 H -0.016 1.016 35 H 0.119 0.881 36 H 0.257 0.743 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 1.315 4.913 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.028 3.972 3 H 0.092 0.908 4 O -0.297 6.297 5 C -0.029 4.029 6 C -0.209 4.209 7 C 0.059 3.941 8 C -0.090 4.090 9 N -0.213 5.213 10 C -0.022 4.022 11 C 0.064 3.936 12 C -0.517 4.517 13 H 0.072 0.928 14 C -0.112 4.112 15 N -0.508 5.508 16 Si 0.714 3.286 17 H -0.212 1.212 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.244 4.244 21 C -0.257 4.257 22 C -0.106 4.106 23 C -0.015 4.015 24 O -0.291 6.291 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.002 0.998 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.873 0.963 5.544 9.677 hybrid contribution 0.329 -0.189 -0.580 0.693 sum -7.544 0.774 4.964 9.064 Atomic orbital electron populations 1.21593 0.93008 1.03080 1.01345 1.22596 0.96003 0.94846 0.83760 0.90816 1.88889 1.40293 1.67710 1.32782 1.23512 0.87418 0.96359 0.95585 1.23616 1.02517 0.98452 0.96338 1.22301 0.86915 0.93508 0.91394 1.22522 0.97893 0.94244 0.94292 1.62105 1.15904 1.37280 1.06041 1.21810 0.96351 0.89658 0.94409 1.18954 0.94881 0.95391 0.84412 1.20274 1.27763 0.93830 1.09821 0.92792 1.24715 0.95441 0.96000 0.95042 1.69769 1.30705 1.29268 1.21055 0.86691 0.78687 0.85455 0.77729 1.21227 1.21118 1.19980 1.22982 0.96115 0.96975 1.08317 1.22995 0.92937 1.02242 1.07539 1.22791 0.91766 0.97926 0.98137 1.22744 0.98438 0.94730 0.85565 1.87827 1.31023 1.72315 1.37905 0.91533 0.92841 0.91191 0.91889 0.89242 0.90591 0.87398 0.95585 0.90019 0.99780 0.86353 0.93250 0.92013 0.90420 0.90791 0.91918 0.87888 0.96238 0.92232 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.62 37.16 0.32 -1.48 16 2 C 0.09 1.30 3.73 -26.43 -0.10 1.20 16 3 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 4 O -0.38 -6.01 11.20 -35.23 -0.39 -6.41 16 5 C 0.05 0.71 7.73 38.27 0.30 1.00 16 6 C -0.17 -2.85 5.25 -24.93 -0.13 -2.98 16 7 C 0.10 1.64 0.96 -89.90 -0.09 1.56 16 8 C 0.04 0.71 4.05 -3.97 -0.02 0.69 16 9 N -0.49 -9.95 3.89 -234.50 -0.91 -10.86 16 10 C 0.10 2.33 4.18 -3.82 -0.02 2.31 16 11 C 0.06 1.50 1.08 -155.66 -0.17 1.33 16 12 C -0.48 -12.26 8.32 -34.44 -0.29 -12.55 16 13 H 0.05 1.41 7.83 -52.48 -0.41 1.00 16 14 C 0.09 2.34 5.19 -17.82 -0.09 2.24 16 15 N -0.87 -22.46 10.69 55.43 0.59 -21.87 16 16 Si 0.89 20.33 29.55 -169.99 -5.02 15.31 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.21 -4.53 9.96 -26.70 -0.27 -4.79 16 21 C -0.22 -4.59 8.22 -26.69 -0.22 -4.81 16 22 C 0.02 0.42 4.90 -3.65 -0.02 0.40 16 23 C 0.06 1.03 6.76 37.21 0.25 1.28 16 24 O -0.37 -6.26 8.43 -35.23 -0.30 -6.56 16 25 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 31 H 0.11 2.08 7.47 -51.93 -0.39 1.69 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H -0.02 -0.34 8.09 -51.93 -0.42 -0.76 16 35 H 0.12 2.93 6.00 -51.93 -0.31 2.61 16 36 H 0.26 6.45 8.32 -40.82 -0.34 6.11 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.10 2.09 5.59 -51.93 -0.29 1.80 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.04 7.27 -51.93 -0.38 0.66 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -25.99 335.47 -9.12 -35.11 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.61 Total: 4.81 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.53 Total: -14.59 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: -0.32 Total: -32.73 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.69 Total: -12.97 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -25.99 -9.12 -35.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.848 kcal (2) G-P(sol) polarization free energy of solvation -25.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds