Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.05271 * 2 1 4 4 O 1.43899 * 109.90379 * 121.18032 * 2 1 3 5 5 C 1.44423 * 106.99688 * 145.73471 * 4 2 1 6 6 C 1.55102 * 103.55566 * 320.25943 * 5 4 2 7 7 C 1.53578 * 109.90903 * 238.82015 * 2 1 3 8 8 C 1.52473 * 110.44470 * 120.16245 * 7 2 1 9 9 N 1.47134 * 109.30583 * 181.85257 * 8 7 2 10 10 C 1.46900 * 110.99893 * 181.29790 * 9 8 7 11 11 C 1.53004 * 109.46909 * 182.56074 * 10 9 8 12 12 C 1.50700 * 115.54490 * 306.02686 * 11 10 9 13 13 H 1.08003 * 119.99762 * 144.26313 * 12 11 10 14 14 C 1.37872 * 120.00566 * 324.25795 * 12 11 10 15 15 N 1.31520 * 119.99527 * 351.49360 * 14 12 11 16 16 Si 1.86796 * 120.00512 * 171.49490 * 14 12 11 17 17 H 1.48498 * 109.46980 * 94.99336 * 16 14 12 18 18 H 1.48497 * 109.47251 * 214.99559 * 16 14 12 19 19 H 1.48507 * 109.47076 * 334.99668 * 16 14 12 20 20 C 1.52994 * 117.50000 * 160.35476 * 11 10 9 21 21 C 1.53002 * 117.49846 * 91.69393 * 11 10 9 22 22 C 1.47138 * 110.69602 * 57.58062 * 9 8 7 23 23 C 1.53094 * 109.31654 * 300.92452 * 22 9 8 24 24 O 1.42310 * 110.59626 * 357.11903 * 7 2 1 25 25 H 1.08993 * 109.47215 * 181.17476 * 1 2 3 26 26 H 1.09001 * 109.47232 * 301.17806 * 1 2 3 27 27 H 1.09004 * 109.46485 * 61.17547 * 1 2 3 28 28 H 1.08992 * 110.60996 * 78.78233 * 5 4 2 29 29 H 1.09003 * 110.60323 * 201.58919 * 5 4 2 30 30 H 1.09001 * 110.92871 * 278.45661 * 6 5 4 31 31 H 1.08994 * 110.93097 * 154.79239 * 6 5 4 32 32 H 1.09002 * 109.50422 * 301.80340 * 8 7 2 33 33 H 1.09005 * 109.49848 * 61.90188 * 8 7 2 34 34 H 1.09002 * 109.47006 * 302.55743 * 10 9 8 35 35 H 1.08993 * 109.47133 * 62.56078 * 10 9 8 36 36 H 0.96995 * 119.99680 * 185.00608 * 15 14 12 37 37 H 1.09000 * 117.50134 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49916 * 145.01922 * 20 11 10 39 39 H 1.08995 * 117.49646 * 214.97879 * 21 11 10 40 40 H 1.08997 * 117.50012 * 359.97438 * 21 11 10 41 41 H 1.09003 * 109.56031 * 180.94702 * 22 9 8 42 42 H 1.08999 * 109.47540 * 60.85443 * 22 9 8 43 43 H 1.09002 * 109.52144 * 297.39520 * 23 22 9 44 44 H 1.09006 * 109.51976 * 177.28049 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 8 2.0199 -0.7005 1.1576 5 6 3.2369 -1.3701 0.7621 6 6 2.9188 -1.8900 -0.6641 7 6 2.0530 -0.7476 -1.2354 8 6 2.9093 0.1765 -2.0942 9 7 3.3598 -0.5508 -3.2912 10 6 4.2153 0.2976 -4.1318 11 6 4.6108 -0.4698 -5.3950 12 6 5.2487 -1.8156 -5.1648 13 1 5.0484 -2.6313 -5.8438 14 6 6.0881 -2.0055 -4.0877 15 7 6.4655 -0.9778 -3.3589 16 14 6.6895 -3.7224 -3.6635 17 1 8.0180 -3.9497 -4.2869 18 1 6.8052 -3.8561 -2.1890 19 1 5.7233 -4.7264 -4.1773 20 6 5.0964 0.3464 -6.5945 21 6 3.7156 -0.3136 -6.6259 22 6 2.2092 -1.0593 -4.0545 23 6 1.3837 -1.9922 -3.1646 24 8 0.9726 -1.2831 -1.9911 25 1 -0.3633 -1.0274 0.0211 26 1 -0.3634 0.5320 0.8792 27 1 -0.3632 0.4955 -0.9004 28 1 4.0704 -0.6683 0.7376 29 1 3.4548 -2.1992 1.4355 30 1 2.3552 -2.8221 -0.6221 31 1 3.8321 -2.0148 -1.2458 32 1 2.3204 1.0430 -2.3951 33 1 3.7760 0.5063 -1.5212 34 1 3.6707 1.1998 -4.4103 35 1 5.1126 0.5714 -3.5771 36 1 7.1124 -1.0999 -2.6466 37 1 5.1345 1.4301 -6.4836 38 1 5.8771 -0.0902 -7.2174 39 1 3.5885 -1.1840 -7.2695 40 1 2.8447 0.3356 -6.5357 41 1 2.5639 -1.6085 -4.9267 42 1 1.5896 -0.2230 -4.3782 43 1 1.9893 -2.8518 -2.8772 44 1 0.5042 -2.3329 -3.7111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = -62.568514 kcal Electronic energy + Delta-G solvation = -24567.612172 eV Core-core repulsion = 21292.657699 eV Total energy + Delta-G solvation = -3274.954473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73874 -39.43440 -38.22647 -35.68173 -34.01237 -33.28818 -32.40938 -30.06347 -28.66642 -27.38983 -25.63251 -25.00664 -23.73916 -22.86856 -22.27965 -20.74210 -20.19648 -18.25956 -17.54716 -17.34333 -16.76905 -16.71934 -16.48335 -15.89491 -15.72211 -15.49342 -15.16401 -14.94041 -14.52692 -14.34944 -13.74792 -13.45914 -13.38693 -13.14397 -13.06826 -12.86210 -12.76293 -12.50783 -12.47573 -12.23610 -12.19426 -11.97196 -11.92427 -11.78730 -11.38513 -11.10707 -10.89391 -10.72299 -10.58341 -10.32721 -9.90156 -8.87497 -7.88102 -5.97605 1.43323 1.48807 1.55239 2.50846 2.65809 2.84274 2.98090 3.25711 3.63436 3.72513 3.74051 3.90919 4.14328 4.15420 4.20801 4.31805 4.34637 4.37513 4.43040 4.51569 4.58170 4.62947 4.68603 4.74302 4.78860 4.84847 4.89083 4.93573 4.95909 5.05059 5.05993 5.13036 5.16243 5.19566 5.37478 5.41361 5.54461 5.68111 5.85908 6.07275 6.22108 6.37743 6.48036 6.62606 6.99462 7.63922 9.10306 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.007350 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.610180 B = 3808.456044 C = 4605.952269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.083 0.917 4 O -0.384 6.384 5 C 0.051 3.949 6 C -0.168 4.168 7 C 0.100 3.900 8 C 0.044 3.956 9 N -0.504 5.504 10 C 0.117 3.883 11 C 0.040 3.960 12 C -0.492 4.492 13 H 0.041 0.959 14 C 0.061 3.939 15 N -0.884 5.884 16 Si 0.931 3.069 17 H -0.287 1.287 18 H -0.284 1.284 19 H -0.276 1.276 20 C -0.209 4.209 21 C -0.195 4.195 22 C 0.027 3.973 23 C 0.066 3.934 24 O -0.370 6.370 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.072 0.928 34 H -0.013 1.013 35 H 0.092 0.908 36 H 0.256 0.744 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.048 0.952 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 1.295 5.454 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.027 3.973 3 H 0.101 0.899 4 O -0.304 6.304 5 C -0.025 4.025 6 C -0.206 4.206 7 C 0.060 3.940 8 C -0.085 4.085 9 N -0.227 5.227 10 C -0.011 4.011 11 C 0.040 3.960 12 C -0.530 4.530 13 H 0.059 0.941 14 C -0.142 4.142 15 N -0.522 5.522 16 Si 0.759 3.241 17 H -0.214 1.214 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.248 4.248 21 C -0.232 4.232 22 C -0.101 4.101 23 C -0.010 4.010 24 O -0.288 6.288 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.236 0.943 6.081 11.098 hybrid contribution 0.768 -0.171 -0.788 1.113 sum -8.468 0.771 5.293 10.016 Atomic orbital electron populations 1.21562 0.91602 1.02886 1.02385 1.22700 0.97123 0.94882 0.82641 0.89919 1.88883 1.40539 1.67860 1.33077 1.23551 0.87193 0.96920 0.94852 1.23501 1.01215 0.98752 0.97131 1.22318 0.86750 0.93301 0.91658 1.22500 0.97833 0.94624 0.93542 1.62013 1.16772 1.37415 1.06517 1.21514 0.95756 0.89890 0.93905 1.19013 0.96508 0.94960 0.85558 1.20396 1.28166 0.94580 1.09829 0.94101 1.25158 0.95728 0.98167 0.95108 1.69883 1.30933 1.30166 1.21184 0.85986 0.77998 0.82742 0.77374 1.21355 1.20966 1.20102 1.22988 0.96827 0.97481 1.07479 1.22934 0.92763 1.02068 1.05450 1.22732 0.91358 0.98114 0.97935 1.22766 0.99185 0.93679 0.85387 1.87839 1.30963 1.72209 1.37830 0.92323 0.91186 0.90751 0.91821 0.87294 0.90439 0.90293 0.95145 0.90932 0.99537 0.89047 0.93455 0.90978 0.91225 0.90564 0.90293 0.89565 0.95903 0.93337 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.62 71.98 0.62 -2.50 16 2 C 0.08 2.38 3.73 30.79 0.11 2.50 16 3 H 0.08 2.19 7.68 -2.39 -0.02 2.17 16 4 O -0.38 -11.46 11.20 -148.98 -1.67 -13.13 16 5 C 0.05 1.45 7.73 72.70 0.56 2.01 16 6 C -0.17 -5.46 5.25 31.76 0.17 -5.30 16 7 C 0.10 3.18 0.96 -10.33 -0.01 3.17 16 8 C 0.04 1.55 4.05 86.08 0.35 1.90 16 9 N -0.50 -20.33 3.89 -895.81 -3.48 -23.81 16 10 C 0.12 5.21 4.18 86.30 0.36 5.57 16 11 C 0.04 1.87 1.08 -52.93 -0.06 1.81 16 12 C -0.49 -25.33 8.32 25.60 0.21 -25.12 16 13 H 0.04 2.16 7.83 -2.91 -0.02 2.13 16 14 C 0.06 3.10 5.19 84.65 0.44 3.54 16 15 N -0.88 -46.15 10.69 21.45 0.23 -45.92 16 16 Si 0.93 41.93 29.55 68.60 2.03 43.95 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 C -0.21 -9.10 9.96 30.62 0.30 -8.80 16 21 C -0.19 -7.90 8.22 30.62 0.25 -7.64 16 22 C 0.03 0.98 4.90 86.29 0.42 1.40 16 23 C 0.07 2.10 6.76 72.01 0.49 2.58 16 24 O -0.37 -11.74 8.43 -148.98 -1.26 -12.99 16 25 H 0.06 1.53 7.81 -2.39 -0.02 1.51 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.76 7.94 -2.38 -0.02 1.74 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 31 H 0.08 3.06 7.47 -2.39 -0.02 3.04 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 34 H -0.01 -0.57 8.09 -2.39 -0.02 -0.59 16 35 H 0.09 4.60 6.00 -2.39 -0.01 4.58 16 36 H 0.26 12.96 8.32 -92.71 -0.77 12.19 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.09 3.44 5.59 -2.39 -0.01 3.43 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 43 H 0.05 1.65 7.27 -2.39 -0.02 1.63 16 44 H 0.12 3.01 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -54.01 335.47 1.03 -52.98 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.96 Total: 23.78 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.22 Total: -24.86 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.25 Total: -69.72 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -2.92 Total: -26.13 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -54.01 1.03 -52.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.592 kcal (2) G-P(sol) polarization free energy of solvation -54.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds