Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.04434 * 2 1 4 4 O 1.43894 * 109.91090 * 121.17652 * 2 1 3 5 5 C 1.44425 * 106.99735 * 145.73220 * 4 2 1 6 6 C 1.55105 * 103.55516 * 320.26618 * 5 4 2 7 7 C 1.53575 * 109.90814 * 238.82693 * 2 1 3 8 8 C 1.52465 * 110.46644 * 356.93201 * 7 2 1 9 9 N 1.47132 * 109.31443 * 178.11076 * 8 7 2 10 10 C 1.46894 * 111.00387 * 178.71637 * 9 8 7 11 11 C 1.53002 * 109.46810 * 46.94865 * 10 9 8 12 12 C 1.50703 * 115.54718 * 281.22422 * 11 10 9 13 13 H 1.08000 * 119.99564 * 146.01377 * 12 11 10 14 14 C 1.37871 * 120.00341 * 326.01567 * 12 11 10 15 15 N 1.31520 * 119.99764 * 340.72599 * 14 12 11 16 16 Si 1.86799 * 120.00338 * 160.72432 * 14 12 11 17 17 H 1.48505 * 109.46777 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46916 * 120.00004 * 16 14 12 19 19 H 1.48490 * 109.47507 * 240.00191 * 16 14 12 20 20 C 1.53001 * 117.49920 * 135.52665 * 11 10 9 21 21 C 1.52993 * 117.50477 * 66.89958 * 11 10 9 22 22 C 1.47016 * 110.67631 * 302.44393 * 9 8 7 23 23 C 1.53100 * 109.38139 * 59.09747 * 22 9 8 24 24 O 1.42316 * 110.57455 * 119.98186 * 7 2 1 25 25 H 1.09007 * 109.46963 * 181.17476 * 1 2 3 26 26 H 1.08998 * 109.47444 * 301.17386 * 1 2 3 27 27 H 1.09001 * 109.47092 * 61.17853 * 1 2 3 28 28 H 1.08994 * 110.61173 * 78.78310 * 5 4 2 29 29 H 1.09002 * 110.60517 * 201.59768 * 5 4 2 30 30 H 1.09003 * 110.93236 * 278.45084 * 6 5 4 31 31 H 1.09003 * 110.92685 * 154.79044 * 6 5 4 32 32 H 1.09002 * 109.50076 * 298.05960 * 8 7 2 33 33 H 1.09004 * 109.49548 * 58.16112 * 8 7 2 34 34 H 1.09006 * 109.47296 * 166.94224 * 10 9 8 35 35 H 1.08996 * 109.47195 * 286.94805 * 10 9 8 36 36 H 0.96997 * 119.99930 * 185.01409 * 15 14 12 37 37 H 1.08996 * 117.50168 * 359.97438 * 20 11 10 38 38 H 1.09000 * 117.50035 * 145.01677 * 20 11 10 39 39 H 1.09003 * 117.50167 * 214.97878 * 21 11 10 40 40 H 1.08999 * 117.49702 * 0.02562 * 21 11 10 41 41 H 1.09002 * 109.49032 * 299.12636 * 22 9 8 42 42 H 1.09007 * 109.50103 * 179.08093 * 22 9 8 43 43 H 1.09000 * 109.51716 * 182.71750 * 23 22 9 44 44 H 1.08999 * 109.52002 * 62.55004 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0240 0.0000 4 8 2.0200 -0.7004 1.1575 5 6 3.2370 -1.3700 0.7620 6 6 2.9188 -1.8899 -0.6643 7 6 2.0529 -0.7474 -1.2355 8 6 0.8933 -1.3237 -2.0403 9 7 1.4192 -1.9941 -3.2398 10 6 0.3329 -2.5905 -4.0286 11 6 -0.7983 -1.5730 -4.1898 12 6 -1.7060 -1.4159 -2.9971 13 1 -2.1321 -0.4507 -2.7662 14 6 -1.9925 -2.5043 -2.2006 15 7 -1.8076 -3.7225 -2.6606 16 14 -2.6430 -2.2487 -0.4684 17 1 -2.7616 -0.7941 -0.1938 18 1 -3.9783 -2.8863 -0.3420 19 1 -1.7071 -2.8624 0.5075 20 6 -1.4238 -1.4261 -5.5783 21 6 -0.5128 -0.3262 -5.0293 22 6 2.2087 -1.0582 -4.0535 23 6 3.3700 -0.5132 -3.2178 24 8 2.8492 0.1140 -2.0412 25 1 -0.3633 -1.0275 0.0211 26 1 -0.3634 0.5319 0.8792 27 1 -0.3633 0.4954 -0.9004 28 1 4.0705 -0.6682 0.7373 29 1 3.4549 -2.1991 1.4353 30 1 2.3552 -2.8220 -0.6223 31 1 3.8321 -2.0146 -1.2460 32 1 0.3493 -2.0445 -1.4298 33 1 0.2218 -0.5185 -2.3385 34 1 0.7103 -2.8730 -5.0115 35 1 -0.0446 -3.4754 -3.5162 36 1 -2.0769 -4.4877 -2.1288 37 1 -1.0292 -2.0540 -6.3771 38 1 -2.4921 -1.2158 -5.6294 39 1 -0.9818 0.6076 -4.7192 40 1 0.4808 -0.2310 -5.4672 41 1 1.5744 -0.2327 -4.3765 42 1 2.6020 -1.5780 -4.9273 43 1 3.9285 0.2173 -3.8032 44 1 4.0292 -1.3328 -2.9322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -35.287213 kcal Electronic energy + Delta-G solvation = -25239.403378 eV Core-core repulsion = 21965.631911 eV Total energy + Delta-G solvation = -3273.771467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48384 -38.11775 -36.73576 -33.77091 -32.69434 -32.09905 -30.94550 -28.81213 -26.52472 -25.96149 -24.49702 -23.61883 -22.03598 -21.39011 -20.84526 -19.17363 -18.51200 -16.82188 -16.34223 -15.66555 -15.53717 -15.07270 -14.93856 -14.51550 -14.31951 -13.83043 -13.69522 -13.53733 -12.94411 -12.68931 -12.44081 -12.02517 -11.96237 -11.76177 -11.48190 -11.12677 -10.99088 -10.91838 -10.82478 -10.75713 -10.53427 -10.40175 -10.15938 -10.11137 -9.89469 -9.54865 -9.33137 -9.12392 -9.01991 -8.85048 -8.05867 -7.25085 -6.17979 -4.12148 3.18260 3.31111 3.32944 3.95702 4.14732 4.26411 4.64047 4.86714 4.96524 5.20041 5.24036 5.39778 5.43524 5.49314 5.56876 5.63645 5.67032 5.79530 5.84671 5.96361 6.00785 6.06104 6.13136 6.21363 6.33372 6.33495 6.36679 6.42680 6.54448 6.57717 6.64148 6.68994 6.74020 6.92977 7.05323 7.13736 7.19218 7.30238 7.53318 7.64704 7.84565 8.00515 8.09928 8.38763 8.77104 9.39207 10.82804 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.010370 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.086150 B = 2699.384111 C = 3855.402928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.092 3.908 3 H 0.076 0.924 4 O -0.375 6.375 5 C 0.046 3.954 6 C -0.167 4.167 7 C 0.085 3.915 8 C 0.050 3.950 9 N -0.526 5.526 10 C 0.075 3.925 11 C 0.028 3.972 12 C -0.488 4.488 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.866 5.866 16 Si 0.867 3.133 17 H -0.263 1.263 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.202 4.202 21 C -0.220 4.220 22 C -0.003 4.003 23 C 0.065 3.935 24 O -0.375 6.375 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.133 0.867 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 3.691 1.811 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.093 0.907 4 O -0.294 6.294 5 C -0.030 4.030 6 C -0.204 4.204 7 C 0.045 3.955 8 C -0.078 4.078 9 N -0.249 5.249 10 C -0.052 4.052 11 C 0.026 3.974 12 C -0.525 4.525 13 H 0.079 0.921 14 C -0.125 4.125 15 N -0.502 5.502 16 Si 0.694 3.306 17 H -0.188 1.188 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.241 4.241 21 C -0.257 4.257 22 C -0.132 4.132 23 C -0.012 4.012 24 O -0.295 6.295 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.323 3.282 2.310 10.150 hybrid contribution -0.857 0.468 0.049 0.978 sum 8.466 3.750 2.359 9.555 Atomic orbital electron populations 1.22151 0.92541 1.03691 1.02704 1.22498 0.95378 0.95622 0.83151 0.90661 1.88911 1.39909 1.67679 1.32917 1.23537 0.87712 0.96034 0.95759 1.23552 1.01120 0.99891 0.95879 1.22648 0.91800 0.89481 0.91568 1.22901 0.93514 0.99732 0.91632 1.62772 1.24193 1.30969 1.06982 1.22190 0.87217 0.99950 0.95808 1.19686 0.95938 0.92064 0.89669 1.20440 1.28421 0.95354 1.08272 0.92110 1.24861 0.94844 0.94980 0.97822 1.69765 1.45466 0.98068 1.36942 0.87017 0.78662 0.79316 0.85587 1.18757 1.21444 1.19972 1.22925 0.97386 1.02718 1.01041 1.23104 0.98904 0.94491 1.09233 1.23094 0.96272 0.97167 0.96655 1.22675 0.95320 0.97120 0.86064 1.87803 1.68116 1.38031 1.35510 0.91272 0.92417 0.89704 0.92514 0.89400 0.89308 0.89958 0.89286 0.90059 0.94713 0.84966 0.92530 0.91923 0.90655 0.90997 0.90789 0.92190 0.91236 0.89422 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.96 37.16 0.30 -2.54 16 2 C 0.09 1.62 3.88 -26.43 -0.10 1.52 16 3 H 0.08 1.27 7.96 -51.93 -0.41 0.86 16 4 O -0.37 -6.65 11.20 -35.23 -0.39 -7.04 16 5 C 0.05 0.68 7.73 38.27 0.30 0.98 16 6 C -0.17 -2.70 5.98 -24.93 -0.15 -2.85 16 7 C 0.09 1.53 0.99 -89.91 -0.09 1.44 16 8 C 0.05 1.02 1.59 -3.97 -0.01 1.01 16 9 N -0.53 -10.49 4.74 -234.60 -1.11 -11.61 16 10 C 0.08 1.68 5.36 -3.83 -0.02 1.66 16 11 C 0.03 0.65 1.10 -155.66 -0.17 0.48 16 12 C -0.49 -12.17 6.34 -34.44 -0.22 -12.39 16 13 H 0.06 1.56 7.89 -52.49 -0.41 1.14 16 14 C 0.08 1.97 3.76 -17.82 -0.07 1.91 16 15 N -0.87 -22.57 10.86 55.43 0.60 -21.97 16 16 Si 0.87 19.82 25.99 -169.99 -4.42 15.40 16 17 H -0.26 -5.83 7.07 56.52 0.40 -5.43 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 C -0.20 -4.47 9.88 -26.73 -0.26 -4.74 16 21 C -0.22 -4.60 8.47 -26.73 -0.23 -4.83 16 22 C 0.00 -0.06 4.97 -3.71 -0.02 -0.08 16 23 C 0.06 0.99 6.73 37.21 0.25 1.24 16 24 O -0.38 -6.56 10.22 -35.23 -0.36 -6.92 16 25 H 0.07 1.41 3.62 -51.93 -0.19 1.22 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.59 6.78 -51.93 -0.35 1.23 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.55 7.77 -51.93 -0.40 1.15 16 31 H 0.08 1.23 6.21 -51.93 -0.32 0.90 16 32 H 0.09 2.04 5.05 -51.93 -0.26 1.78 16 33 H 0.08 1.81 4.06 -51.93 -0.21 1.60 16 34 H 0.03 0.74 7.73 -51.93 -0.40 0.34 16 35 H 0.13 3.33 5.21 -51.93 -0.27 3.06 16 36 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 37 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 38 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.43 5.70 -51.93 -0.30 1.14 16 41 H 0.06 1.11 4.54 -51.93 -0.24 0.88 16 42 H 0.07 1.11 8.03 -51.93 -0.42 0.70 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -25.90 311.23 -8.10 -34.00 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.61 Total: 10.65 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.49 Total: -17.20 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.51 Total: -33.58 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.75 Total: -13.96 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.42 Total: 15.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.90 -8.10 -34.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds