Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99486 * 2 1 4 4 O 1.20815 * 120.00374 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99741 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.44959 * 33.29114 * 5 3 2 7 7 C 1.53037 * 109.46683 * 273.31476 * 5 3 2 8 8 C 1.53117 * 109.30826 * 180.82352 * 7 5 3 9 9 H 1.09002 * 109.52385 * 297.72544 * 8 7 5 10 10 C 1.53004 * 109.51922 * 177.60188 * 8 7 5 11 11 C 1.53118 * 109.16231 * 57.63503 * 8 7 5 12 12 C 1.53035 * 109.27791 * 302.34341 * 11 8 7 13 13 N 1.46849 * 109.52398 * 59.18005 * 12 11 8 14 14 C 1.46896 * 110.99699 * 174.16222 * 13 12 11 15 15 C 1.52995 * 109.47135 * 73.20074 * 14 13 12 16 16 C 1.50703 * 115.55080 * 304.34037 * 15 14 13 17 17 H 1.07997 * 119.99912 * 114.49109 * 16 15 14 18 18 C 1.37877 * 119.99941 * 294.49465 * 16 15 14 19 19 N 1.31511 * 120.00377 * 171.47425 * 18 16 15 20 20 Si 1.86805 * 119.99985 * 351.47149 * 18 16 15 21 21 H 1.48501 * 109.46890 * 87.96151 * 20 18 16 22 22 H 1.48498 * 109.47262 * 207.95576 * 20 18 16 23 23 H 1.48498 * 109.47180 * 327.96168 * 20 18 16 24 24 C 1.53006 * 117.49678 * 158.67556 * 15 14 13 25 25 C 1.52998 * 117.50170 * 90.01636 * 15 14 13 26 26 H 1.08997 * 109.47417 * 59.99511 * 1 2 3 27 27 H 1.09001 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46507 * 299.99101 * 1 2 3 29 29 H 1.09005 * 109.50068 * 60.85929 * 7 5 3 30 30 H 1.09000 * 109.49890 * 300.78722 * 7 5 3 31 31 H 1.09003 * 109.46950 * 60.00184 * 10 8 7 32 32 H 1.09002 * 109.47290 * 180.02562 * 10 8 7 33 33 H 1.09001 * 109.47406 * 300.00185 * 10 8 7 34 34 H 1.09007 * 109.50197 * 62.28749 * 11 8 7 35 35 H 1.09001 * 109.50137 * 182.35884 * 11 8 7 36 36 H 1.08994 * 109.45978 * 179.19252 * 12 11 8 37 37 H 1.09000 * 109.45920 * 299.15850 * 12 11 8 38 38 H 1.09005 * 109.46550 * 193.19786 * 14 13 12 39 39 H 1.09000 * 109.46983 * 313.19459 * 14 13 12 40 40 H 0.96993 * 120.00654 * 180.02562 * 19 18 16 41 41 H 1.08994 * 117.50140 * 359.97438 * 24 15 14 42 42 H 1.08998 * 117.49708 * 145.02131 * 24 15 14 43 43 H 1.09001 * 117.49532 * 214.97728 * 25 15 14 44 44 H 1.09000 * 117.49718 * 359.97239 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9740 0.4359 -0.5633 7 6 4.0794 1.2187 1.4413 8 6 5.6072 1.3198 1.4389 9 1 6.0279 0.4680 0.9046 10 6 6.1215 1.3242 2.8799 11 6 6.0239 2.6178 0.7416 12 6 5.4553 2.6331 -0.6792 13 7 3.9912 2.5349 -0.6229 14 6 3.4017 2.6856 -1.9599 15 6 3.6623 1.4192 -2.7778 16 6 5.1081 1.0133 -2.9046 17 1 5.4513 0.0917 -2.4583 18 6 5.9926 1.8185 -3.5902 19 7 7.2807 1.5550 -3.5603 20 14 5.3614 3.2839 -4.5618 21 1 5.2871 4.4717 -3.6737 22 1 6.2861 3.5659 -5.6890 23 1 4.0094 2.9790 -5.0950 24 6 2.7453 1.1486 -3.9724 25 6 2.6190 0.3026 -2.7029 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 3.7777 0.2763 1.8984 30 1 3.6605 2.0493 2.0094 31 1 5.8197 0.4018 3.3762 32 1 7.2091 1.3967 2.8773 33 1 5.7022 2.1776 3.4128 34 1 5.6357 3.4708 1.2982 35 1 7.1116 2.6753 0.6995 36 1 5.7382 3.5624 -1.1735 37 1 5.8548 1.7877 -1.2393 38 1 2.3272 2.8438 -1.8674 39 1 3.8531 3.5416 -2.4616 40 1 7.9031 2.1217 -4.0424 41 1 1.9561 1.8725 -4.1752 42 1 3.1876 0.6766 -4.8496 43 1 2.9784 -0.7256 -2.7456 44 1 1.7472 0.4701 -2.0705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = -53.674771 kcal Electronic energy + Delta-G solvation = -24848.013195 eV Core-core repulsion = 21573.444384 eV Total energy + Delta-G solvation = -3274.568811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60160 -38.56160 -36.61680 -35.99614 -33.35034 -32.38893 -30.83235 -28.37886 -27.47679 -26.02312 -24.54207 -23.67641 -21.73406 -21.52003 -20.22561 -19.35747 -18.68082 -17.14172 -16.63014 -16.20921 -15.79592 -15.07250 -14.78034 -14.14834 -14.06593 -13.83829 -13.61292 -13.37287 -12.96338 -12.78686 -12.44611 -12.39122 -11.97028 -11.88931 -11.81952 -11.57759 -11.20306 -11.02060 -10.81705 -10.60555 -10.57742 -10.40381 -10.34697 -10.27831 -10.04718 -9.70068 -9.55896 -9.53868 -8.99597 -8.70414 -8.49358 -7.35319 -6.23174 -4.15364 2.65298 3.02591 3.23559 3.34690 3.43113 4.35169 4.60501 4.94180 5.04207 5.13943 5.22371 5.25034 5.26500 5.31981 5.41202 5.64949 5.70147 5.79634 5.82774 5.90903 6.00620 6.03582 6.10227 6.12985 6.20389 6.24779 6.32063 6.43604 6.48663 6.51382 6.58325 6.66544 6.70581 6.76548 6.78992 6.86767 7.03895 7.11952 7.51879 7.61386 7.77889 7.92118 8.26218 8.39311 8.76337 9.40009 10.86426 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.009802 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.395054 B = 2855.852972 C = 4170.048205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.500 6.500 5 C 0.098 3.902 6 H 0.093 0.907 7 C -0.098 4.098 8 C -0.089 4.089 9 H 0.075 0.925 10 C -0.143 4.143 11 C -0.110 4.110 12 C 0.029 3.971 13 N -0.504 5.504 14 C 0.074 3.926 15 C -0.036 4.036 16 C -0.484 4.484 17 H 0.078 0.922 18 C 0.086 3.914 19 N -0.887 5.887 20 Si 0.862 3.138 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.251 1.251 24 C -0.191 4.191 25 C -0.188 4.188 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.266 0.734 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 -1.803 8.754 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.386 6.386 5 C -0.012 4.012 6 H 0.111 0.889 7 C -0.136 4.136 8 C -0.107 4.107 9 H 0.094 0.906 10 C -0.200 4.200 11 C -0.148 4.148 12 C -0.097 4.097 13 N -0.228 5.228 14 C -0.054 4.054 15 C -0.038 4.038 16 C -0.521 4.521 17 H 0.096 0.904 18 C -0.118 4.118 19 N -0.522 5.522 20 Si 0.689 3.311 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.175 1.175 24 C -0.230 4.230 25 C -0.225 4.225 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.919 -1.050 8.999 11.400 hybrid contribution -0.310 0.294 -1.278 1.347 sum -7.229 -0.756 7.721 10.604 Atomic orbital electron populations 1.23156 0.77502 1.03142 1.02105 1.86583 1.22480 1.34159 1.84388 1.23803 0.92170 0.80924 0.71284 1.90594 1.67021 1.36294 1.44727 1.21186 0.85922 0.96366 0.97764 0.88912 1.21586 0.96430 1.01862 0.93756 1.21115 0.94116 0.99476 0.96005 0.90615 1.21799 1.00833 1.01166 0.96206 1.21686 0.99824 0.96457 0.96864 1.22790 0.85793 1.05328 0.95791 1.62250 1.10504 1.30066 1.20018 1.22022 0.98440 0.97256 0.87728 1.20298 0.93104 0.93727 0.96714 1.20086 0.88651 1.08234 1.35111 0.90385 1.24830 0.94363 0.97157 0.95411 1.69888 1.01507 1.39287 1.41564 0.87109 0.80252 0.83309 0.80388 1.20099 1.22008 1.17480 1.22988 1.03511 1.03316 0.93175 1.22999 1.01058 0.97055 1.01422 0.92215 0.88512 0.92373 0.91500 0.91234 0.93100 0.92703 0.92993 0.92593 0.91898 0.92017 0.86249 0.91855 0.91553 0.92363 0.91570 0.89676 0.89675 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.39 101.05 1.05 1.49 16 2 O -0.36 -5.85 9.20 -39.26 -0.36 -6.21 16 3 C 0.48 8.81 3.93 36.01 0.14 8.95 16 4 O -0.50 -10.26 14.74 -18.74 -0.28 -10.54 16 5 C 0.10 1.83 1.67 -68.87 -0.12 1.71 16 6 H 0.09 1.90 6.05 -51.93 -0.31 1.58 16 7 C -0.10 -1.55 4.64 -26.65 -0.12 -1.68 16 8 C -0.09 -1.36 2.79 -90.50 -0.25 -1.61 16 9 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.14 -1.76 9.20 37.16 0.34 -1.42 16 11 C -0.11 -1.89 5.38 -26.65 -0.14 -2.03 16 12 C 0.03 0.61 4.42 -3.83 -0.02 0.59 16 13 N -0.50 -10.41 4.45 -228.08 -1.02 -11.43 16 14 C 0.07 1.63 4.65 -3.83 -0.02 1.61 16 15 C -0.04 -0.81 0.09 -155.66 -0.01 -0.82 16 16 C -0.48 -12.19 5.65 -34.44 -0.19 -12.38 16 17 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 18 C 0.09 2.26 4.31 -17.82 -0.08 2.18 16 19 N -0.89 -24.50 13.96 55.43 0.77 -23.73 16 20 Si 0.86 20.63 25.19 -169.99 -4.28 16.35 16 21 H -0.27 -6.54 6.81 56.52 0.38 -6.16 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.25 -5.84 5.78 56.52 0.33 -5.51 16 24 C -0.19 -4.09 7.96 -26.69 -0.21 -4.30 16 25 C -0.19 -3.84 7.83 -26.69 -0.21 -4.05 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.36 7.98 -51.93 -0.41 0.95 16 37 H 0.12 2.82 4.31 -51.93 -0.22 2.60 16 38 H 0.06 1.41 6.17 -51.93 -0.32 1.09 16 39 H 0.07 1.54 4.94 -51.93 -0.26 1.28 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.07 1.37 4.71 -51.93 -0.24 1.12 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -27.88 324.62 -7.45 -35.33 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.34 Total: 7.10 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 0.16 Total: -11.77 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.24 Total: -35.15 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.64 Total: -16.74 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.28 Total: 16.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.88 -7.45 -35.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.343 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds