Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99800 * 2 1 4 4 O 1.20829 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99891 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.45391 * 327.89178 * 5 3 2 7 7 C 1.53035 * 109.46379 * 87.87083 * 5 3 2 8 8 C 1.53116 * 109.27686 * 179.19429 * 7 5 3 9 9 H 1.09009 * 109.57415 * 182.40609 * 8 7 5 10 10 C 1.53004 * 109.52478 * 62.25225 * 8 7 5 11 11 C 1.53117 * 109.16325 * 302.34561 * 8 7 5 12 12 C 1.53032 * 109.27922 * 57.65329 * 11 8 7 13 13 N 1.46849 * 109.45924 * 207.92388 * 5 3 2 14 14 C 1.46901 * 111.00134 * 54.14705 * 13 5 3 15 15 C 1.53003 * 109.46988 * 199.29118 * 14 13 5 16 16 C 1.50704 * 115.54735 * 54.35873 * 15 14 13 17 17 H 1.07996 * 120.00039 * 270.20021 * 16 15 14 18 18 C 1.37877 * 119.99830 * 90.20394 * 16 15 14 19 19 N 1.31515 * 119.99904 * 354.52599 * 18 16 15 20 20 Si 1.86804 * 119.99982 * 174.53519 * 18 16 15 21 21 H 1.48497 * 109.47196 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46954 * 59.99453 * 20 18 16 23 23 H 1.48502 * 109.46935 * 299.99647 * 20 18 16 24 24 C 1.52991 * 117.51876 * 200.06001 * 15 14 13 25 25 C 1.52993 * 60.00078 * 107.48293 * 24 15 14 26 26 H 1.08992 * 109.46869 * 60.00835 * 1 2 3 27 27 H 1.09009 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47701 * 300.00098 * 1 2 3 29 29 H 1.08997 * 109.50122 * 59.25014 * 7 5 3 30 30 H 1.09003 * 109.53620 * 299.15474 * 7 5 3 31 31 H 1.09001 * 109.46551 * 300.31461 * 10 8 7 32 32 H 1.09003 * 109.47450 * 60.31395 * 10 8 7 33 33 H 1.08998 * 109.47002 * 180.31465 * 10 8 7 34 34 H 1.09007 * 109.50182 * 297.71401 * 11 8 7 35 35 H 1.09003 * 109.50650 * 177.59992 * 11 8 7 36 36 H 1.08997 * 109.46417 * 180.80485 * 12 11 8 37 37 H 1.09002 * 109.46446 * 60.83710 * 12 11 8 38 38 H 1.09001 * 109.47457 * 79.29187 * 14 13 5 39 39 H 1.09002 * 109.46978 * 319.28831 * 14 13 5 40 40 H 0.96996 * 120.00146 * 355.36525 * 19 18 16 41 41 H 1.08999 * 117.50010 * 214.97454 * 24 15 14 42 42 H 1.09004 * 117.50139 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.50002 * 252.50971 * 25 24 15 44 44 H 1.09006 * 117.52194 * 107.48338 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9742 0.4246 0.5472 7 6 4.0789 1.2478 -1.4411 8 6 5.6068 1.3484 -1.4363 9 1 5.9744 1.3725 -2.4623 10 6 6.1967 0.1377 -0.7103 11 6 6.0237 2.6319 -0.7130 12 6 5.4547 2.6190 0.7075 13 7 3.9905 2.5224 0.6489 14 6 3.4007 2.6465 1.9886 15 6 3.4507 4.1093 2.4343 16 6 2.8255 5.0995 1.4857 17 1 3.4229 5.5558 0.7104 18 6 1.4907 5.4228 1.6079 19 7 0.7379 4.7893 2.4805 20 14 0.7517 6.7605 0.5337 21 1 -0.6895 6.9149 0.8566 22 1 0.9010 6.3864 -0.8957 23 1 1.4561 8.0433 0.7858 24 6 3.3346 4.3961 3.9326 25 6 4.6795 4.5658 3.2233 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.6604 2.0900 -1.9920 30 1 3.7771 0.3151 -1.9178 31 1 5.8268 0.1131 0.3148 32 1 5.8994 -0.7756 -1.2258 33 1 7.2840 0.2130 -0.7025 34 1 5.6358 3.4961 -1.2525 35 1 7.1114 2.6880 -0.6689 36 1 5.7377 3.5381 1.2205 37 1 5.8537 1.7624 1.2508 38 1 3.9639 2.0329 2.6918 39 1 2.3643 2.3100 1.9618 40 1 1.1039 4.0498 2.9903 41 1 2.8059 5.3009 4.2324 42 1 3.2221 3.5425 4.6012 43 1 5.4521 3.8239 3.4252 44 1 5.0360 5.5822 3.0560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = -56.361085 kcal Electronic energy + Delta-G solvation = -24371.668165 eV Core-core repulsion = 21096.982866 eV Total energy + Delta-G solvation = -3274.685299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43717 -38.70710 -36.73801 -35.87581 -33.45876 -31.55833 -31.09380 -28.15809 -27.40724 -25.65461 -24.45764 -23.84061 -22.46135 -21.20498 -20.32853 -19.12784 -18.37035 -17.28179 -16.51979 -16.36873 -15.79531 -14.96144 -14.59050 -14.21929 -14.10614 -13.87007 -13.53829 -13.47106 -13.21906 -12.78471 -12.69265 -12.21353 -12.00180 -11.82128 -11.71939 -11.44447 -11.22588 -11.01553 -10.79730 -10.63041 -10.59663 -10.41336 -10.35516 -10.24865 -10.10545 -9.93805 -9.56841 -9.29426 -8.27900 -8.23976 -8.05294 -7.51878 -6.02555 -3.70677 2.76993 3.01056 3.58721 3.64914 3.79747 4.32082 4.76911 4.86022 4.89621 5.02223 5.25456 5.28073 5.35397 5.36234 5.39643 5.48112 5.56183 5.62677 5.66568 5.73070 5.77525 5.83710 5.92534 6.03153 6.05493 6.13305 6.17722 6.22259 6.33397 6.34215 6.44592 6.46788 6.58348 6.63887 6.76433 6.80877 6.97696 7.37195 7.38758 7.67157 7.81175 8.38000 8.56445 8.75165 9.19080 9.99808 11.36496 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.008042 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.944858 B = 3480.899350 C = 4311.103573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.442 3.558 4 O -0.439 6.439 5 C 0.101 3.899 6 H 0.059 0.941 7 C -0.100 4.100 8 C -0.089 4.089 9 H 0.073 0.927 10 C -0.152 4.152 11 C -0.113 4.113 12 C 0.062 3.938 13 N -0.488 5.488 14 C 0.093 3.907 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.049 0.951 18 C 0.032 3.968 19 N -0.911 5.911 20 Si 1.062 2.938 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.294 1.294 24 C -0.180 4.180 25 C -0.204 4.204 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.024 0.976 38 H 0.001 0.999 39 H 0.069 0.931 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 -11.044 -6.014 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.280 3.720 4 O -0.320 6.320 5 C -0.008 4.008 6 H 0.077 0.923 7 C -0.138 4.138 8 C -0.107 4.107 9 H 0.091 0.909 10 C -0.209 4.209 11 C -0.151 4.151 12 C -0.066 4.066 13 N -0.214 5.214 14 C -0.035 4.035 15 C 0.041 3.959 16 C -0.571 4.571 17 H 0.067 0.933 18 C -0.172 4.172 19 N -0.547 5.547 20 Si 0.892 3.108 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.221 1.221 24 C -0.218 4.218 25 C -0.241 4.241 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.042 0.958 38 H 0.019 0.981 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.648 -9.474 -6.595 12.851 hybrid contribution 1.433 -1.584 0.889 2.314 sum 7.081 -11.058 -5.706 14.317 Atomic orbital electron populations 1.23155 0.76944 1.02761 1.02798 1.86458 1.22982 1.34487 1.85298 1.23653 0.91914 0.81626 0.74800 1.90897 1.65882 1.35162 1.40035 1.21161 0.87343 0.94117 0.98226 0.92329 1.21561 0.95799 1.02701 0.93756 1.21123 0.94439 0.95476 0.99683 0.90853 1.21963 1.00502 0.97556 1.00903 1.21655 0.99433 0.97740 0.96288 1.22144 0.86777 1.01207 0.96432 1.61520 1.07677 1.30390 1.21807 1.21920 0.97898 0.97872 0.85762 1.18980 0.95257 0.91729 0.89913 1.20930 0.96356 1.24332 1.15461 0.93313 1.25466 0.93678 1.00409 0.97667 1.70702 1.38785 1.21396 1.23827 0.83661 0.75879 0.75333 0.75899 1.21346 1.21671 1.22067 1.22726 0.99927 1.01623 0.97527 1.22964 0.91103 1.00654 1.09386 0.92168 0.88775 0.91817 0.90113 0.91250 0.92479 0.92795 0.92722 0.90585 0.91857 0.89287 0.95836 0.98101 0.91222 0.92052 0.89550 0.92134 0.92148 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.34 10.57 -39.25 -0.41 -6.76 16 3 C 0.44 8.73 5.81 36.01 0.21 8.93 16 4 O -0.44 -10.73 15.11 -18.75 -0.28 -11.02 16 5 C 0.10 1.77 2.10 -68.87 -0.14 1.62 16 6 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 7 C -0.10 -1.45 4.86 -26.65 -0.13 -1.58 16 8 C -0.09 -1.08 3.22 -90.50 -0.29 -1.38 16 9 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 10 C -0.15 -1.64 8.61 37.16 0.32 -1.32 16 11 C -0.11 -1.58 5.60 -26.65 -0.15 -1.73 16 12 C 0.06 1.04 5.02 -3.83 -0.02 1.02 16 13 N -0.49 -9.79 3.86 -228.07 -0.88 -10.67 16 14 C 0.09 2.11 4.50 -3.82 -0.02 2.09 16 15 C 0.04 1.05 0.87 -155.66 -0.14 0.91 16 16 C -0.53 -15.10 8.54 -34.44 -0.29 -15.39 16 17 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 18 C 0.03 0.95 5.37 -17.82 -0.10 0.85 16 19 N -0.91 -27.98 13.40 55.43 0.74 -27.24 16 20 Si 1.06 26.95 29.91 -169.99 -5.08 21.87 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C -0.18 -4.30 8.38 -26.74 -0.22 -4.53 16 25 C -0.20 -4.48 8.47 -26.74 -0.23 -4.71 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.68 4.92 -51.93 -0.26 0.43 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.64 6.06 -51.93 -0.31 1.32 16 37 H 0.02 0.37 6.51 -51.93 -0.34 0.03 16 38 H 0.00 0.02 7.96 -51.93 -0.41 -0.39 16 39 H 0.07 1.77 5.58 -51.93 -0.29 1.48 16 40 H 0.27 8.22 6.43 -40.82 -0.26 7.96 16 41 H 0.09 2.24 8.14 -51.93 -0.42 1.82 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 44 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -32.70 341.63 -8.23 -40.93 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.33 Total: 1.33 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.13 Total: -13.60 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.14 Total: -37.91 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.70 Total: -17.77 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -5.08 Total: 21.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.70 -8.23 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.427 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds