Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47380 * 120.00057 * 2 1 3 5 5 C 1.53005 * 109.47142 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46890 * 300.00059 * 5 4 2 7 7 C 1.52998 * 109.47189 * 60.00408 * 6 5 4 8 8 H 1.09001 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47466 * 59.99621 * 7 6 5 10 10 C 1.42891 * 113.99907 * 89.99775 * 9 7 6 11 11 C 1.50707 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00055 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99837 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00033 * 179.97438 * 13 11 10 15 15 H 1.07993 * 120.00708 * 224.49199 * 14 13 11 16 16 C 1.38961 * 119.99771 * 44.49168 * 14 13 11 17 17 N 1.31420 * 119.99602 * 17.99149 * 16 14 13 18 18 Si 1.86790 * 120.00052 * 197.99611 * 16 14 13 19 19 H 1.48498 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47233 * 119.99942 * 18 16 14 21 21 H 1.48507 * 109.47073 * 239.99676 * 18 16 14 22 22 C 1.46504 * 120.00378 * 0.02562 * 13 11 10 23 23 C 1.52992 * 117.50249 * 183.27201 * 22 13 11 24 24 C 1.52995 * 117.50162 * 114.60606 * 22 13 11 25 25 C 1.52998 * 109.47057 * 240.00413 * 2 1 3 26 26 H 1.09001 * 109.47020 * 299.99635 * 1 2 3 27 27 H 1.08994 * 109.47641 * 59.99651 * 1 2 3 28 28 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46911 * 60.00409 * 4 2 1 30 30 H 1.09001 * 109.47295 * 300.00139 * 4 2 1 31 31 H 1.09005 * 109.46731 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.47243 * 60.00022 * 5 4 2 33 33 H 1.09004 * 109.46771 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47639 * 299.99870 * 6 5 4 35 35 H 1.08998 * 109.47719 * 300.00554 * 10 9 7 36 36 H 1.09000 * 109.47199 * 60.00434 * 10 9 7 37 37 H 0.97000 * 119.99160 * 174.95945 * 17 16 14 38 38 H 1.09001 * 115.54768 * 328.94087 * 22 13 11 39 39 H 1.09006 * 117.50002 * 359.97438 * 23 22 13 40 40 H 1.08992 * 117.50340 * 145.01799 * 23 22 13 41 41 H 1.08995 * 117.50327 * 214.97911 * 24 22 13 42 42 H 1.09005 * 117.49858 * 0.02562 * 24 22 13 43 43 H 1.09002 * 109.47304 * 299.99634 * 25 2 1 44 44 H 1.08996 * 109.47331 * 60.00180 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0794 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9327 -1.2359 -2.1397 9 8 4.0462 0.6251 -1.2500 10 6 5.3057 0.7957 -1.9029 11 6 5.7096 2.2464 -1.8443 12 8 4.9898 3.0546 -1.2967 13 7 6.8710 2.6456 -2.3994 14 6 7.2381 3.9654 -2.3465 15 1 7.6348 4.4513 -3.2256 16 6 7.0999 4.6781 -1.1616 17 7 6.9629 4.0379 -0.0220 18 14 7.1088 6.5457 -1.1885 19 1 7.2764 7.0199 -2.5858 20 1 5.8247 7.0548 -0.6432 21 1 8.2329 7.0475 -0.3578 22 6 7.7408 1.6693 -3.0603 23 6 9.0804 2.1703 -3.6033 24 6 7.9474 1.8148 -4.5692 25 6 2.0399 -0.7212 -1.2493 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2491 30 1 1.6767 -0.2075 2.1392 31 1 3.9334 -1.2360 2.1386 32 1 3.9337 0.3058 1.2486 33 1 5.1695 -1.4441 -0.0005 34 1 3.7158 -2.4709 -0.0003 35 1 6.0597 0.1877 -1.4028 36 1 5.2203 0.4846 -2.9441 37 1 6.9399 4.5324 0.8122 38 1 7.7094 0.6593 -2.6517 39 1 9.3147 3.2264 -3.4693 40 1 9.9303 1.4898 -3.5524 41 1 8.0524 0.9005 -5.1533 42 1 7.4365 2.6371 -5.0702 43 1 1.6766 -1.7489 -1.2494 44 1 1.6766 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609576515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -62.246850 kcal Electronic energy + Delta-G solvation = -23326.713893 eV Core-core repulsion = 20051.773368 eV Total energy + Delta-G solvation = -3274.940525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.29720 -38.36073 -36.31318 -35.45258 -32.73274 -32.04937 -30.94897 -30.01346 -27.29923 -26.26477 -24.29621 -22.30651 -21.71660 -21.17070 -21.07528 -19.57403 -19.09489 -16.58188 -16.05567 -15.84282 -15.47027 -14.93763 -14.68803 -14.51532 -14.05608 -13.89531 -13.58863 -13.34448 -12.97556 -12.53640 -12.46540 -12.09472 -12.00602 -11.73429 -11.62591 -11.49254 -11.14380 -10.97263 -10.85604 -10.85242 -10.67987 -10.53383 -10.27889 -10.13112 -10.00491 -9.96522 -9.77299 -9.73546 -8.98037 -8.67152 -7.90234 -6.98971 -6.06995 -3.83409 3.31981 3.41787 3.44541 3.92026 4.16265 4.37858 4.77553 4.84176 4.89507 4.93676 5.07804 5.30643 5.32068 5.36980 5.44223 5.55858 5.61119 5.65487 5.68170 5.75941 5.76783 5.77242 5.84433 5.92002 5.94975 5.99283 6.02989 6.09039 6.17452 6.20570 6.21690 6.41803 6.45388 6.46312 6.50278 6.60304 6.73456 6.80761 6.93312 7.63121 7.72972 8.32395 9.09064 9.22673 9.68745 10.34143 11.01982 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.005245 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.756371 B = 5336.662577 C = 6224.150220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.084 3.916 8 H 0.054 0.946 9 O -0.346 6.346 10 C 0.052 3.948 11 C 0.485 3.515 12 O -0.511 6.511 13 N -0.429 5.429 14 C -0.348 4.348 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.831 5.831 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.286 1.286 22 C 0.073 3.927 23 C -0.172 4.172 24 C -0.208 4.208 25 C -0.105 4.105 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -12.326 -2.153 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.176 4.176 7 C 0.026 3.974 8 H 0.072 0.928 9 O -0.263 6.263 10 C -0.029 4.029 11 C 0.272 3.728 12 O -0.386 6.386 13 N -0.153 5.153 14 C -0.474 4.474 15 H 0.095 0.905 16 C -0.138 4.138 17 N -0.465 5.465 18 Si 0.739 3.261 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.212 1.212 22 C -0.034 4.034 23 C -0.210 4.210 24 C -0.247 4.247 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.620 -11.713 -1.544 13.083 hybrid contribution 0.426 0.453 -0.058 0.625 sum -5.194 -11.259 -1.602 12.503 Atomic orbital electron populations 1.21826 0.95884 1.01000 1.01530 1.21071 0.94496 1.01355 0.94168 0.89562 1.21539 0.95804 0.99616 0.97608 1.21428 0.95313 1.02250 0.96454 1.21991 1.00736 0.98717 0.96125 1.22067 0.94515 0.84446 0.96394 0.92812 1.88095 1.35480 1.24979 1.77784 1.22377 0.86381 0.98235 0.95894 1.19479 0.82058 0.87866 0.83425 1.90547 1.51604 1.54164 1.42325 1.42681 1.14453 1.06155 1.51966 1.18848 1.47939 0.84336 0.96319 0.90457 1.25267 0.94497 0.99276 0.94747 1.69842 1.42932 1.36196 0.97493 0.86159 0.77574 0.84213 0.78149 1.19585 1.20633 1.21208 1.21711 0.95524 0.93918 0.92229 1.23060 0.91363 1.03142 1.03390 1.23334 1.04574 1.02593 0.94237 1.21618 0.93557 1.00278 0.98784 0.92933 0.92849 0.93285 0.92825 0.92374 0.92756 0.90370 0.92014 0.91828 0.92614 0.92529 0.92646 0.88269 0.87417 0.89822 0.89838 0.89051 0.91414 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.15 0.34 -1.33 16 2 C -0.09 -1.29 2.57 -90.63 -0.23 -1.52 16 3 H 0.09 1.52 7.68 -51.93 -0.40 1.12 16 4 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 5 C -0.12 -1.70 5.78 -26.73 -0.15 -1.86 16 6 C -0.14 -1.88 5.63 -26.73 -0.15 -2.03 16 7 C 0.08 1.26 2.92 -26.76 -0.08 1.18 16 8 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 9 O -0.35 -6.96 8.17 -55.14 -0.45 -7.41 16 10 C 0.05 1.05 4.85 36.01 0.17 1.23 16 11 C 0.49 12.78 7.04 -10.98 -0.08 12.70 16 12 O -0.51 -15.81 14.27 -14.36 -0.20 -16.01 16 13 N -0.43 -10.91 2.83 -107.73 -0.31 -11.21 16 14 C -0.35 -9.61 7.91 -14.93 -0.12 -9.72 16 15 H 0.08 2.06 7.27 -52.49 -0.38 1.68 16 16 C 0.07 2.08 4.39 -17.46 -0.08 2.01 16 17 N -0.83 -25.11 11.74 55.50 0.65 -24.46 16 18 Si 0.91 22.27 29.59 -169.99 -5.03 17.24 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.07 1.45 5.87 -67.94 -0.40 1.05 16 23 C -0.17 -3.08 9.80 -26.70 -0.26 -3.35 16 24 C -0.21 -3.53 10.36 -26.70 -0.28 -3.81 16 25 C -0.10 -1.39 4.94 -26.76 -0.13 -1.52 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 33 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.05 7.29 -51.93 -0.38 0.68 16 36 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 38 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 39 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -33.28 347.73 -9.39 -42.67 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.71 Total: 2.47 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.58 Total: -8.53 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.35 Total: -35.67 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.66 Total: -23.43 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.28 -9.39 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609576515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.577 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds