Wall clock time and date at job start Tue Mar 31 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 C 1.53005 * 109.46982 * 239.99735 * 2 1 3 5 5 C 1.53000 * 109.47248 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47252 * 59.99848 * 5 4 2 7 7 C 1.52998 * 109.47323 * 300.00399 * 6 5 4 8 8 H 1.08996 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46895 * 299.99884 * 7 6 5 10 10 C 1.42902 * 113.99842 * 269.99805 * 9 7 6 11 11 C 1.50701 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00380 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99519 * 179.97438 * 11 10 9 14 14 C 1.37102 * 119.99744 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99937 * 224.49339 * 14 13 11 16 16 C 1.38949 * 120.00201 * 44.48451 * 14 13 11 17 17 N 1.31409 * 119.99389 * 17.99734 * 16 14 13 18 18 Si 1.86799 * 120.00164 * 197.99948 * 16 14 13 19 19 H 1.48494 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47226 * 120.00061 * 18 16 14 21 21 H 1.48501 * 109.46666 * 240.00177 * 18 16 14 22 22 C 1.46502 * 120.00276 * 0.02562 * 13 11 10 23 23 C 1.53003 * 117.49667 * 183.26888 * 22 13 11 24 24 C 1.53003 * 117.49641 * 114.61079 * 22 13 11 25 25 C 1.52999 * 109.47189 * 120.00182 * 2 1 3 26 26 H 1.09001 * 109.46951 * 300.00361 * 1 2 3 27 27 H 1.08996 * 109.46866 * 59.99913 * 1 2 3 28 28 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46815 * 59.99949 * 4 2 1 30 30 H 1.08998 * 109.47176 * 300.00516 * 4 2 1 31 31 H 1.08998 * 109.47232 * 300.00210 * 5 4 2 32 32 H 1.08994 * 109.47266 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46703 * 60.00341 * 6 5 4 34 34 H 1.08999 * 109.47399 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47365 * 300.00222 * 10 9 7 36 36 H 1.09002 * 109.47030 * 59.99856 * 10 9 7 37 37 H 0.97004 * 119.99524 * 174.96026 * 17 16 14 38 38 H 1.08993 * 115.54797 * 328.94203 * 22 13 11 39 39 H 1.08997 * 117.50033 * 0.02562 * 23 22 13 40 40 H 1.08999 * 117.49486 * 145.02103 * 23 22 13 41 41 H 1.08994 * 117.49788 * 214.97494 * 24 22 13 42 42 H 1.08997 * 117.50127 * 359.97438 * 24 22 13 43 43 H 1.08998 * 109.47005 * 59.99461 * 25 2 1 44 44 H 1.09001 * 109.46731 * 299.99592 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2495 8 1 3.9322 -1.2365 2.1394 9 8 4.0463 0.6249 1.2497 10 6 5.3059 0.7955 1.9027 11 6 5.7104 2.2460 1.8428 12 8 4.9906 3.0542 1.2954 13 7 6.8715 2.6452 2.3987 14 6 7.2392 3.9649 2.3447 15 1 8.2538 4.2327 2.0888 16 6 6.3067 4.9578 2.6191 17 7 5.1997 4.6599 3.2615 18 14 6.6266 6.7158 2.0747 19 1 7.9351 6.7873 1.3762 20 1 5.5480 7.1524 1.1522 21 1 6.6514 7.6053 3.2636 22 6 7.7406 1.6691 3.0605 23 6 9.0070 2.1961 3.7384 24 6 9.1106 1.4033 2.4331 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6766 -0.2075 -2.1392 30 1 1.6766 -1.7490 -1.2493 31 1 3.9337 0.3056 -1.2488 32 1 3.9333 -1.2354 -2.1391 33 1 3.7158 -2.4710 0.0000 34 1 5.1695 -1.4443 0.0002 35 1 5.2206 0.4843 2.9439 36 1 6.0598 0.1875 1.4025 37 1 4.5832 5.3637 3.5175 38 1 7.2307 0.8283 3.5306 39 1 9.1932 3.2690 3.6924 40 1 9.3304 1.7016 4.6544 41 1 9.5021 0.3877 2.4909 42 1 9.3650 1.9543 1.5277 43 1 1.6766 -1.7489 1.2492 44 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609576516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:12 Heat of formation + Delta-G solvation = -62.276212 kcal Electronic energy + Delta-G solvation = -23307.450466 eV Core-core repulsion = 20032.508668 eV Total energy + Delta-G solvation = -3274.941798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.30721 -38.36377 -36.31518 -35.45483 -32.73410 -32.07122 -30.95053 -30.02395 -27.30166 -26.27316 -24.29644 -22.33210 -21.71706 -21.17016 -21.09141 -19.57827 -19.10293 -16.58938 -16.07904 -15.83513 -15.38683 -15.11675 -14.55752 -14.53037 -14.15855 -13.78761 -13.65248 -13.39516 -12.89066 -12.65495 -12.43886 -12.07118 -11.95909 -11.83276 -11.67287 -11.38766 -11.20224 -10.97305 -10.85917 -10.85496 -10.70572 -10.53814 -10.29549 -10.14559 -10.00474 -9.96638 -9.78141 -9.74159 -8.98777 -8.67218 -7.90311 -6.99005 -6.07009 -3.83495 3.32005 3.41777 3.44566 3.92115 4.15975 4.37827 4.77502 4.83386 4.88009 4.92340 5.07205 5.28716 5.31745 5.35452 5.43018 5.56156 5.59304 5.64285 5.68077 5.72845 5.76385 5.76674 5.84549 5.92390 5.96477 5.97982 6.01456 6.07404 6.16517 6.19507 6.21749 6.40222 6.43816 6.44919 6.48497 6.55482 6.73393 6.77930 6.93375 7.63051 7.72851 8.32409 9.09050 9.22636 9.68734 10.34109 11.02024 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.005247 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.370417 B = 5334.658087 C = 6318.758138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.086 0.914 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.138 4.138 7 C 0.084 3.916 8 H 0.054 0.946 9 O -0.345 6.345 10 C 0.052 3.948 11 C 0.486 3.514 12 O -0.511 6.511 13 N -0.429 5.429 14 C -0.348 4.348 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.832 5.832 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.286 1.286 22 C 0.072 3.928 23 C -0.172 4.172 24 C -0.208 4.208 25 C -0.106 4.106 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -13.312 -2.911 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.176 4.176 7 C 0.026 3.974 8 H 0.072 0.928 9 O -0.263 6.263 10 C -0.029 4.029 11 C 0.272 3.728 12 O -0.386 6.386 13 N -0.153 5.153 14 C -0.474 4.474 15 H 0.095 0.905 16 C -0.138 4.138 17 N -0.465 5.465 18 Si 0.739 3.261 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.212 1.212 22 C -0.034 4.034 23 C -0.210 4.210 24 C -0.247 4.247 25 C -0.143 4.143 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.998 -12.652 -3.280 13.410 hybrid contribution 0.375 0.469 0.145 0.618 sum -2.622 -12.183 -3.135 12.851 Atomic orbital electron populations 1.21826 0.95855 1.00996 1.01582 1.21071 0.94562 1.01332 0.94108 0.89558 1.21543 0.95707 0.99703 0.97654 1.21421 0.95462 1.02012 0.96477 1.21999 1.00657 0.98824 0.96114 1.22061 0.94587 0.84432 0.96342 0.92778 1.88098 1.35596 1.24988 1.77634 1.22378 0.86247 0.98146 0.96113 1.19477 0.83682 0.87573 0.82085 1.90546 1.50490 1.53888 1.43718 1.42684 1.17936 1.05919 1.48728 1.18848 0.97605 0.79792 1.51186 0.90456 1.25265 0.95238 0.99315 0.93977 1.69837 1.10415 1.33356 1.32896 0.86157 0.78441 0.83074 0.78421 1.19580 1.20629 1.21201 1.21712 0.86398 0.95497 0.99780 1.23061 1.01702 1.01430 0.94758 1.23331 1.03345 1.00187 0.97854 1.21621 0.93549 1.00256 0.98883 0.92764 0.92961 0.93290 0.92382 0.92775 0.90602 0.92762 0.91765 0.92033 0.92605 0.92536 0.92632 0.88272 0.87414 0.89822 0.89847 0.89058 0.91430 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.09 -1.29 2.58 -90.62 -0.23 -1.52 16 3 H 0.09 1.52 7.68 -51.93 -0.40 1.12 16 4 C -0.11 -1.35 5.20 -26.73 -0.14 -1.49 16 5 C -0.12 -1.58 5.78 -26.73 -0.15 -1.74 16 6 C -0.14 -1.80 5.63 -26.73 -0.15 -1.95 16 7 C 0.08 1.26 2.91 -26.76 -0.08 1.18 16 8 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 9 O -0.35 -6.96 8.17 -55.14 -0.45 -7.41 16 10 C 0.05 1.05 4.85 36.01 0.17 1.23 16 11 C 0.49 12.79 7.04 -10.98 -0.08 12.71 16 12 O -0.51 -15.82 14.27 -14.36 -0.20 -16.02 16 13 N -0.43 -10.91 2.83 -107.73 -0.31 -11.22 16 14 C -0.35 -9.61 7.91 -14.93 -0.12 -9.73 16 15 H 0.08 2.07 7.27 -52.48 -0.38 1.68 16 16 C 0.07 2.08 4.39 -17.47 -0.08 2.01 16 17 N -0.83 -25.18 11.74 55.50 0.65 -24.53 16 18 Si 0.91 22.28 29.59 -169.99 -5.03 17.25 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.07 1.45 5.87 -67.93 -0.40 1.05 16 23 C -0.17 -3.08 9.80 -26.69 -0.26 -3.35 16 24 C -0.21 -3.53 10.36 -26.69 -0.28 -3.81 16 25 C -0.11 -1.43 4.94 -26.76 -0.13 -1.56 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.06 1.05 7.51 -51.93 -0.39 0.66 16 36 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 37 H 0.26 7.63 8.32 -40.82 -0.34 7.29 16 38 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 39 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -33.36 347.73 -9.39 -42.75 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.71 Total: 2.28 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.58 Total: -8.33 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.35 Total: -35.75 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.66 Total: -23.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.36 -9.39 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609576516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.530 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds