Wall clock time and date at job start Tue Mar 31 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47141 * 2 1 4 4 C 1.52999 * 109.46706 * 119.99722 * 2 1 3 5 5 C 1.53001 * 109.46999 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47189 * 300.00415 * 5 4 2 7 7 C 1.52999 * 109.47489 * 59.99886 * 6 5 4 8 8 H 1.09002 * 109.46960 * 59.99445 * 7 6 5 9 9 O 1.42892 * 109.47476 * 180.02562 * 7 6 5 10 10 C 1.42902 * 113.99980 * 270.00132 * 9 7 6 11 11 C 1.50697 * 109.47047 * 179.97438 * 10 9 7 12 12 O 1.21296 * 120.00277 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00019 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99894 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99837 * 222.42865 * 14 13 11 16 16 C 1.38954 * 120.00205 * 42.43398 * 14 13 11 17 17 N 1.31410 * 119.99598 * 19.28766 * 16 14 13 18 18 Si 1.86797 * 120.00117 * 199.28979 * 16 14 13 19 19 H 1.48498 * 109.46937 * 89.99758 * 18 16 14 20 20 H 1.48494 * 109.47348 * 209.99726 * 18 16 14 21 21 H 1.48503 * 109.47225 * 329.99563 * 18 16 14 22 22 C 1.46497 * 120.00128 * 359.97438 * 13 11 10 23 23 C 1.52992 * 117.50406 * 183.39409 * 22 13 11 24 24 C 1.53000 * 117.50046 * 114.73074 * 22 13 11 25 25 C 1.52997 * 109.47240 * 239.99989 * 2 1 3 26 26 H 1.08996 * 109.47606 * 300.00323 * 1 2 3 27 27 H 1.09002 * 109.46865 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46902 * 60.00416 * 1 2 3 29 29 H 1.08997 * 109.47487 * 299.99995 * 4 2 1 30 30 H 1.08996 * 109.47094 * 60.00248 * 4 2 1 31 31 H 1.09010 * 109.46783 * 60.00284 * 5 4 2 32 32 H 1.09003 * 109.47195 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.46805 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47062 * 299.99732 * 6 5 4 35 35 H 1.09003 * 109.47001 * 299.99336 * 10 9 7 36 36 H 1.08994 * 109.47396 * 59.99874 * 10 9 7 37 37 H 0.97003 * 119.99979 * 174.77502 * 17 16 14 38 38 H 1.08999 * 115.54797 * 329.07003 * 22 13 11 39 39 H 1.09004 * 117.49765 * 0.02562 * 23 22 13 40 40 H 1.09005 * 117.50164 * 145.01747 * 23 22 13 41 41 H 1.08994 * 117.50081 * 214.98333 * 24 22 13 42 42 H 1.09000 * 117.49452 * 359.97438 * 24 22 13 43 43 H 1.09004 * 109.46740 * 300.00058 * 25 2 1 44 44 H 1.09003 * 109.47504 * 59.99963 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5696 -0.7222 -1.2495 8 1 3.9332 0.3054 -1.2496 9 8 4.0450 -1.3965 -2.4162 10 6 5.3048 -0.9178 -2.8913 11 6 5.7077 -1.6958 -4.1175 12 8 4.9866 -2.5735 -4.5430 13 7 6.8687 -1.4156 -4.7420 14 6 7.2355 -2.1237 -5.8572 15 1 8.2576 -2.4513 -5.9769 16 6 6.2921 -2.4198 -6.8336 17 7 5.1756 -1.7300 -6.8990 18 14 6.6112 -3.7984 -8.0530 19 1 6.0824 -5.0742 -7.5073 20 1 5.9324 -3.4903 -9.3373 21 1 8.0725 -3.9267 -8.2839 22 6 7.7389 -0.3545 -4.2292 23 6 9.0035 -0.0306 -5.0269 24 6 9.1098 -0.7648 -3.6880 25 6 2.0401 -0.7212 -1.2492 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.6766 -0.2074 2.1393 30 1 1.6766 -1.7488 1.2493 31 1 3.9337 0.3058 1.2488 32 1 3.9333 -1.2352 2.1393 33 1 5.1695 -1.4434 -0.0005 34 1 3.7158 -2.4709 0.0001 35 1 5.2204 0.1394 -3.1429 36 1 6.0590 -1.0475 -2.1152 37 1 4.5515 -1.8850 -7.6253 38 1 7.2299 0.4730 -3.7349 39 1 9.1880 -0.6068 -5.9336 40 1 9.3268 1.0100 -5.0573 41 1 9.5029 -0.2071 -2.8381 42 1 9.3642 -1.8245 -3.7131 43 1 1.6767 -1.7489 -1.2492 44 1 1.6768 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609576517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:15 Heat of formation + Delta-G solvation = -62.941569 kcal Electronic energy + Delta-G solvation = -22909.231006 eV Core-core repulsion = 19634.260356 eV Total energy + Delta-G solvation = -3274.970650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27826 -38.41274 -36.54966 -35.61962 -32.72805 -32.28936 -30.96661 -29.97100 -27.23973 -26.41899 -24.31004 -22.33537 -21.72473 -21.21158 -21.12647 -19.86692 -19.27634 -16.63463 -16.10607 -15.99684 -15.24986 -15.07080 -14.70619 -14.52044 -14.33170 -14.00590 -13.63266 -13.45142 -13.02465 -12.83887 -12.46038 -12.40330 -12.13810 -11.84956 -11.54142 -11.41306 -11.05295 -10.99659 -10.90777 -10.83603 -10.80844 -10.57029 -10.46660 -10.29993 -10.18733 -10.10637 -9.96596 -9.74945 -9.00773 -8.67540 -7.88840 -6.99380 -6.06200 -3.81200 3.34130 3.41113 3.45318 3.84135 4.15851 4.35865 4.63706 4.73474 4.77288 4.83738 5.02953 5.10420 5.19240 5.28027 5.35328 5.43313 5.51812 5.55039 5.56538 5.60390 5.65937 5.71261 5.76502 5.79649 5.80382 5.92597 5.97182 6.00192 6.07661 6.13651 6.19806 6.21493 6.24719 6.27666 6.42166 6.43850 6.48448 6.73185 6.92605 7.62455 7.72311 8.31579 9.08646 9.23332 9.69494 10.34765 11.02825 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004402 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.718017 B = 6359.875512 C = 7244.050930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.142 4.142 7 C 0.088 3.912 8 H 0.054 0.946 9 O -0.352 6.352 10 C 0.054 3.946 11 C 0.481 3.519 12 O -0.510 6.510 13 N -0.428 5.428 14 C -0.351 4.351 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.829 5.829 18 Si 0.913 3.087 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.072 3.928 23 C -0.172 4.172 24 C -0.208 4.208 25 C -0.110 4.110 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 6.434 14.410 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.180 4.180 7 C 0.029 3.971 8 H 0.072 0.928 9 O -0.270 6.270 10 C -0.027 4.027 11 C 0.267 3.733 12 O -0.385 6.385 13 N -0.151 5.151 14 C -0.477 4.477 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.463 5.463 18 Si 0.740 3.260 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.034 4.034 23 C -0.210 4.210 24 C -0.247 4.247 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.085 5.782 14.020 15.476 hybrid contribution 0.381 -0.202 -0.494 0.656 sum -2.703 5.581 13.526 14.880 Atomic orbital electron populations 1.21812 0.95068 1.01932 1.01519 1.21097 0.95549 0.99489 0.94618 0.91277 1.21631 0.95535 1.00862 0.97283 1.21488 0.95638 1.00582 0.97629 1.22056 1.00810 1.00704 0.94418 1.22044 0.94473 0.95023 0.85531 0.92776 1.88084 1.35863 1.60023 1.43046 1.22367 0.86007 0.97623 0.96668 1.19453 0.83782 0.85854 0.84167 1.90552 1.50429 1.32543 1.65004 1.42692 1.17905 1.29711 1.24841 1.18842 0.96605 1.34555 0.97696 0.90326 1.25231 0.95226 0.96677 0.96689 1.69839 1.09748 1.36839 1.29835 0.86205 0.77987 0.82591 0.79189 1.20302 1.21307 1.19919 1.21699 0.86390 0.93571 1.01740 1.23070 1.01699 1.00019 0.96204 1.23334 1.03275 1.01091 0.97003 1.21611 0.93808 1.01785 0.97593 0.92833 0.92592 0.92559 0.92151 0.91804 0.92111 0.91913 0.91873 0.91084 0.92553 0.92467 0.92556 0.88229 0.87410 0.89786 0.89813 0.89023 0.91059 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.09 -0.94 2.72 -90.62 -0.25 -1.18 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 6 C -0.14 -1.88 5.54 -26.73 -0.15 -2.03 16 7 C 0.09 1.35 2.61 -26.76 -0.07 1.28 16 8 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 9 O -0.35 -7.42 9.52 -55.14 -0.52 -7.94 16 10 C 0.05 1.12 4.85 36.00 0.17 1.29 16 11 C 0.48 12.88 7.05 -10.99 -0.08 12.80 16 12 O -0.51 -16.07 14.11 -14.36 -0.20 -16.27 16 13 N -0.43 -10.99 2.85 -107.73 -0.31 -11.29 16 14 C -0.35 -9.75 8.00 -14.93 -0.12 -9.87 16 15 H 0.08 2.10 7.18 -52.49 -0.38 1.72 16 16 C 0.07 2.10 4.35 -17.47 -0.08 2.02 16 17 N -0.83 -25.32 11.64 55.50 0.65 -24.67 16 18 Si 0.91 22.41 29.60 -169.99 -5.03 17.37 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.07 1.46 5.87 -67.94 -0.40 1.06 16 23 C -0.17 -3.10 9.80 -26.70 -0.26 -3.36 16 24 C -0.21 -3.54 10.36 -26.69 -0.28 -3.81 16 25 C -0.11 -1.52 4.85 -26.76 -0.13 -1.65 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 36 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 37 H 0.26 7.73 8.32 -40.82 -0.34 7.39 16 38 H 0.10 1.78 6.95 -51.93 -0.36 1.41 16 39 H 0.11 2.15 6.68 -51.93 -0.35 1.80 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -34.02 349.48 -9.49 -43.51 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.75 Total: 1.10 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.59 Total: -7.07 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.34 Total: -35.97 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.73 Total: -24.21 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.02 -9.49 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609576517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.430 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds