Wall clock time and date at job start Tue Mar 31 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47573 * 2 1 4 4 C 1.53007 * 109.47081 * 240.00318 * 2 1 3 5 5 C 1.53001 * 109.47081 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47171 * 59.99922 * 5 4 2 7 7 C 1.53002 * 109.46883 * 299.99943 * 6 5 4 8 8 H 1.09004 * 109.47217 * 300.00040 * 7 6 5 9 9 O 1.42900 * 109.46939 * 179.97438 * 7 6 5 10 10 C 1.42904 * 113.99971 * 90.00029 * 9 7 6 11 11 C 1.50704 * 109.46843 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00188 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99521 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99692 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99873 * 222.43295 * 14 13 11 16 16 C 1.38949 * 119.99952 * 42.43374 * 14 13 11 17 17 N 1.31406 * 120.00328 * 19.28980 * 16 14 13 18 18 Si 1.86800 * 119.99892 * 199.29367 * 16 14 13 19 19 H 1.48497 * 109.47374 * 89.99991 * 18 16 14 20 20 H 1.48500 * 109.47212 * 210.00048 * 18 16 14 21 21 H 1.48505 * 109.47247 * 329.99810 * 18 16 14 22 22 C 1.46494 * 120.00272 * 0.02562 * 13 11 10 23 23 C 1.52998 * 117.49853 * 183.39293 * 22 13 11 24 24 C 1.53008 * 117.49834 * 114.73357 * 22 13 11 25 25 C 1.52996 * 109.47283 * 120.00298 * 2 1 3 26 26 H 1.08991 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46838 * 300.00105 * 1 2 3 28 28 H 1.08996 * 109.46801 * 59.99915 * 1 2 3 29 29 H 1.09000 * 109.47056 * 59.99943 * 4 2 1 30 30 H 1.09004 * 109.47008 * 299.99834 * 4 2 1 31 31 H 1.08999 * 109.47202 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47145 * 300.00318 * 5 4 2 33 33 H 1.09002 * 109.47068 * 59.99451 * 6 5 4 34 34 H 1.08994 * 109.46961 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46900 * 299.99948 * 10 9 7 36 36 H 1.09001 * 109.46989 * 60.00275 * 10 9 7 37 37 H 0.97003 * 120.00184 * 174.76898 * 17 16 14 38 38 H 1.08998 * 115.55042 * 329.06772 * 22 13 11 39 39 H 1.08997 * 117.49960 * 0.02562 * 23 22 13 40 40 H 1.09004 * 117.49738 * 145.02758 * 23 22 13 41 41 H 1.09001 * 117.49979 * 214.98264 * 24 22 13 42 42 H 1.08997 * 117.49724 * 359.97438 * 24 22 13 43 43 H 1.09004 * 109.47219 * 59.99913 * 25 2 1 44 44 H 1.08999 * 109.46924 * 300.00075 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0806 -1.4416 -0.0004 7 6 3.5706 -0.7204 1.2488 8 1 3.9335 0.3075 1.2486 9 8 4.0469 -1.3940 2.4156 10 6 5.3066 -0.9143 2.8902 11 6 5.7099 -1.6909 4.1172 12 8 4.9897 -2.5690 4.5430 13 7 6.8713 -1.4102 4.7407 14 6 7.2385 -2.1170 5.8566 15 1 7.6659 -1.6031 6.7048 16 6 7.0606 -3.4945 5.8962 17 7 6.9088 -4.1698 4.7792 18 14 7.0371 -4.3864 7.5373 19 1 5.6448 -4.4415 8.0509 20 1 7.5534 -5.7671 7.3578 21 1 7.8943 -3.6596 8.5080 22 6 7.7414 -0.3499 4.2260 23 6 9.0823 -0.1326 4.9300 24 6 7.9506 0.8827 5.1081 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2073 -2.1393 30 1 1.6767 -1.7489 -1.2494 31 1 3.9334 -1.2348 -2.1394 32 1 3.9330 0.3071 -1.2498 33 1 3.7175 -2.4694 -0.0002 34 1 5.1705 -1.4408 -0.0004 35 1 6.0605 -1.0437 2.1137 36 1 5.2215 0.1429 3.1415 37 1 6.8608 -5.1384 4.8007 38 1 7.7087 -0.1971 3.1473 39 1 9.3173 -0.7787 5.7757 40 1 9.9317 0.1637 4.3144 41 1 8.0559 1.8463 4.6096 42 1 7.4405 0.9048 6.0711 43 1 1.6767 -1.7490 1.2491 44 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609576518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:17 Heat of formation + Delta-G solvation = -62.929696 kcal Electronic energy + Delta-G solvation = -22911.276346 eV Core-core repulsion = 19636.306211 eV Total energy + Delta-G solvation = -3274.970135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.27087 -38.41173 -36.54858 -35.61981 -32.72884 -32.28244 -30.96638 -29.96654 -27.23844 -26.41642 -24.30992 -22.32950 -21.72632 -21.21314 -21.11340 -19.86854 -19.27557 -16.64033 -16.07382 -16.00137 -15.31385 -15.00305 -14.73542 -14.48450 -14.24367 -14.15078 -13.65156 -13.31184 -13.01166 -12.97147 -12.42050 -12.31866 -12.20409 -11.83450 -11.62118 -11.31967 -11.07362 -10.98206 -10.92599 -10.83462 -10.80328 -10.57014 -10.47786 -10.27420 -10.16784 -10.12990 -9.96644 -9.74892 -9.00204 -8.67546 -7.88854 -6.99386 -6.06143 -3.81171 3.34136 3.41128 3.45342 3.84135 4.16039 4.35862 4.64051 4.73502 4.77705 4.83652 5.03421 5.11473 5.19686 5.28293 5.34823 5.43701 5.52158 5.54888 5.56771 5.60379 5.66107 5.71862 5.76201 5.79163 5.79893 5.93519 5.96997 5.99095 6.08723 6.15450 6.19175 6.21516 6.26696 6.28384 6.41914 6.43433 6.49570 6.73281 6.92661 7.62510 7.72393 8.31589 9.08689 9.23375 9.69522 10.34799 11.02837 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.004333 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.939025 B = 6460.848005 C = 7135.943750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.143 4.143 7 C 0.088 3.912 8 H 0.054 0.946 9 O -0.353 6.353 10 C 0.054 3.946 11 C 0.481 3.519 12 O -0.510 6.510 13 N -0.428 5.428 14 C -0.351 4.351 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.829 5.829 18 Si 0.913 3.087 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.072 3.928 23 C -0.172 4.172 24 C -0.208 4.208 25 C -0.110 4.110 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 10.239 -11.105 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.180 4.180 7 C 0.029 3.971 8 H 0.072 0.928 9 O -0.270 6.270 10 C -0.027 4.027 11 C 0.268 3.732 12 O -0.385 6.385 13 N -0.152 5.152 14 C -0.477 4.477 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.462 5.462 18 Si 0.740 3.260 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.034 4.034 23 C -0.210 4.210 24 C -0.247 4.247 25 C -0.148 4.148 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.665 9.401 -10.876 15.452 hybrid contribution 0.401 -0.227 0.473 0.660 sum -5.264 9.174 -10.403 14.836 Atomic orbital electron populations 1.21810 0.95084 1.01942 1.01485 1.21098 0.95516 0.99468 0.94665 0.91290 1.21635 0.95580 1.00876 0.97237 1.21490 0.95580 1.00544 0.97715 1.22055 1.00908 1.00755 0.94318 1.22067 0.94374 0.94963 0.85653 0.92796 1.88085 1.35756 1.60157 1.43036 1.22371 0.86137 0.97310 0.96855 1.19451 0.82155 0.86123 0.85515 1.90548 1.51541 1.31012 1.65426 1.42692 1.14407 1.31369 1.26685 1.18841 1.47040 0.89008 0.92811 0.90327 1.25228 0.94681 0.96840 0.97069 1.69836 1.42428 1.07222 1.26758 0.86208 0.78493 0.78387 0.82892 1.20302 1.21310 1.19921 1.21701 0.95486 0.91748 0.94467 1.23071 0.91372 1.02318 1.04228 1.23338 1.04549 0.93849 1.02974 1.21628 0.93814 1.01798 0.97514 0.92578 0.92603 0.92830 0.92160 0.91776 0.91888 0.92137 0.91012 0.91828 0.92567 0.92455 0.92559 0.88229 0.87408 0.89791 0.89809 0.89019 0.91012 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.14 5.20 -26.73 -0.14 -1.28 16 5 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 6 C -0.14 -1.98 5.54 -26.73 -0.15 -2.12 16 7 C 0.09 1.35 2.61 -26.70 -0.07 1.28 16 8 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 9 O -0.35 -7.42 9.52 -55.14 -0.52 -7.94 16 10 C 0.05 1.12 4.85 36.01 0.17 1.29 16 11 C 0.48 12.88 7.05 -10.98 -0.08 12.80 16 12 O -0.51 -16.06 14.12 -14.36 -0.20 -16.26 16 13 N -0.43 -10.98 2.85 -107.73 -0.31 -11.29 16 14 C -0.35 -9.75 8.00 -14.93 -0.12 -9.87 16 15 H 0.08 2.10 7.18 -52.49 -0.38 1.72 16 16 C 0.07 2.10 4.35 -17.47 -0.08 2.02 16 17 N -0.83 -25.31 11.64 55.50 0.65 -24.66 16 18 Si 0.91 22.40 29.60 -169.99 -5.03 17.37 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.07 1.46 5.87 -67.93 -0.40 1.06 16 23 C -0.17 -3.10 9.80 -26.69 -0.26 -3.36 16 24 C -0.21 -3.54 10.36 -26.69 -0.28 -3.82 16 25 C -0.11 -1.48 4.86 -26.71 -0.13 -1.61 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 35 H 0.06 1.08 7.29 -51.93 -0.38 0.70 16 36 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 37 H 0.26 7.73 8.32 -40.82 -0.34 7.39 16 38 H 0.10 1.78 6.95 -51.93 -0.36 1.42 16 39 H 0.11 2.15 6.68 -51.93 -0.35 1.81 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -34.02 349.49 -9.49 -43.50 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.75 Total: 1.15 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.59 Total: -7.13 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.34 Total: -35.95 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.73 Total: -24.21 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.02 -9.49 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609576518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.428 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds