Wall clock time and date at job start Tue Mar 31 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47614 * 2 1 4 4 C 1.50703 * 109.47065 * 120.00291 * 2 1 3 5 5 H 1.07998 * 120.00288 * 119.99428 * 4 2 1 6 6 C 1.37875 * 119.99722 * 299.99927 * 4 2 1 7 7 N 1.31521 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46966 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46740 * 299.99242 * 8 6 4 11 11 H 1.48496 * 109.47388 * 59.99744 * 8 6 4 12 12 C 1.53000 * 109.47102 * 239.99452 * 2 1 3 13 13 N 1.46504 * 109.46888 * 60.00264 * 12 2 1 14 14 C 1.34780 * 120.00414 * 179.97438 * 13 12 2 15 15 O 1.21287 * 119.99347 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00186 * 180.02562 * 14 13 12 17 17 H 1.08997 * 115.55828 * 56.82132 * 16 14 13 18 18 C 1.53058 * 117.50773 * 202.58815 * 16 14 13 19 19 C 1.52687 * 59.93415 * 107.46391 * 18 16 14 20 20 C 1.53253 * 117.88062 * 107.78628 * 19 18 16 21 21 C 1.53334 * 108.48202 * 196.25951 * 20 19 18 22 22 O 1.42862 * 109.32324 * 306.01570 * 21 20 19 23 23 C 1.42881 * 114.51684 * 64.36283 * 22 21 20 24 24 C 1.53256 * 117.88358 * 252.21498 * 19 18 16 25 25 H 1.09003 * 109.46666 * 300.00266 * 1 2 3 26 26 H 1.09007 * 109.46693 * 59.99702 * 1 2 3 27 27 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47046 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46762 * 300.00010 * 3 2 1 30 30 H 1.08994 * 109.46875 * 59.99736 * 3 2 1 31 31 H 0.96994 * 120.00434 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47577 * 180.02562 * 12 2 1 33 33 H 1.09004 * 109.47567 * 300.00741 * 12 2 1 34 34 H 0.97000 * 120.00152 * 0.02562 * 13 12 2 35 35 H 1.09004 * 117.50577 * 214.94105 * 18 16 14 36 36 H 1.09001 * 117.50518 * 359.97438 * 18 16 14 37 37 H 1.09001 * 109.63238 * 315.95755 * 20 19 18 38 38 H 1.08998 * 109.63900 * 76.55987 * 20 19 18 39 39 H 1.09001 * 109.49521 * 186.05609 * 21 20 19 40 40 H 1.09006 * 109.49314 * 65.97052 * 21 20 19 41 41 H 1.09001 * 109.49422 * 175.67704 * 23 22 21 42 42 H 1.08996 * 109.49154 * 55.59216 * 23 22 21 43 43 H 1.09000 * 109.63616 * 283.43738 * 24 19 18 44 44 H 1.08994 * 109.63315 * 44.04064 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 1.8278 -0.4193 5.2204 10 1 1.8278 -2.5198 4.0082 11 1 3.8074 -1.1191 4.0078 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 1.8776 -0.4910 -3.6696 15 8 2.5749 -1.4771 -3.7808 16 6 1.3758 0.2198 -4.9000 17 1 1.6375 1.2753 -4.9729 18 6 1.3056 -0.5833 -6.2011 19 6 0.0226 -0.2119 -5.4613 20 6 -0.8734 0.8676 -6.0781 21 6 -1.8506 1.3603 -5.0041 22 8 -2.5480 0.2428 -4.4511 23 6 -1.7189 -0.6850 -3.7488 24 6 -0.7321 -1.3277 -4.7306 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9562 0.8899 31 1 0.7095 1.1618 3.4843 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 0.9943 0.7581 -2.3565 35 1 1.5217 -0.0561 -7.1303 36 1 1.6229 -1.6256 -6.1670 37 1 -0.2597 1.6992 -6.4242 38 1 -1.4307 0.4468 -6.9151 39 1 -2.5659 2.0501 -5.4521 40 1 -1.2974 1.8705 -4.2155 41 1 -2.3400 -1.4591 -3.2981 42 1 -1.1667 -0.1611 -2.9687 43 1 -1.2775 -1.9350 -5.4531 44 1 -0.0248 -1.9510 -4.1837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689986056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:30 Heat of formation + Delta-G solvation = -75.910319 kcal Electronic energy + Delta-G solvation = -23540.958236 eV Core-core repulsion = 20265.425219 eV Total energy + Delta-G solvation = -3275.533017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47124 -38.65533 -36.79372 -35.92190 -33.26535 -31.34361 -30.88442 -30.17192 -26.17102 -25.76255 -25.24720 -23.85260 -23.45752 -22.63839 -20.21702 -18.96799 -18.67898 -17.02066 -16.28881 -16.07692 -15.83958 -15.15871 -15.06286 -14.86502 -14.64801 -14.05158 -13.65253 -13.37738 -13.14793 -12.90471 -12.64018 -12.49596 -12.23160 -12.01014 -11.51311 -11.36215 -11.20845 -11.15648 -10.87266 -10.81759 -10.74101 -10.42799 -10.41317 -10.24071 -10.06840 -9.66253 -9.55656 -9.38920 -9.18323 -8.81530 -8.46942 -8.33227 -6.03689 -4.14012 2.86221 3.28990 3.33481 3.36532 3.53200 3.76381 3.83645 4.38187 4.47860 4.59077 4.69493 4.78024 4.91723 5.12932 5.22959 5.24674 5.38974 5.41379 5.51512 5.58113 5.63680 5.69605 5.75733 5.96384 5.98182 6.06700 6.13092 6.21410 6.29462 6.48160 6.74863 6.79541 6.90674 6.98646 7.00681 7.17456 7.32570 7.53003 7.67398 7.98374 8.03029 8.13566 8.36342 8.68339 8.86492 9.51955 10.97635 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.004627 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.193531 B = 6049.404104 C = 6578.980342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.535 3.465 15 O -0.551 6.551 16 C -0.181 4.181 17 H 0.123 0.877 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.116 4.116 21 C 0.061 3.939 22 O -0.383 6.383 23 C 0.062 3.938 24 C -0.121 4.121 25 H 0.086 0.914 26 H 0.005 0.995 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.005 0.995 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 2.425 -15.327 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.430 6.430 16 C -0.202 4.202 17 H 0.141 0.859 18 C -0.175 4.175 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.016 4.016 22 O -0.301 6.301 23 C -0.015 4.015 24 C -0.159 4.159 25 H 0.104 0.896 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.655 1.809 -15.226 16.024 hybrid contribution 0.565 0.040 0.937 1.095 sum -4.091 1.849 -14.289 14.977 Atomic orbital electron populations 1.21831 0.97707 0.99117 1.00032 1.18345 0.92801 0.92709 0.90535 1.21831 0.98583 0.98392 1.00051 1.20935 1.31587 1.12124 0.89894 0.92536 1.24872 0.94824 0.94905 0.98824 1.69789 1.36601 1.22677 1.23360 0.86636 0.79235 0.79803 0.82202 1.21313 1.20276 1.20302 1.21731 0.98151 0.95743 0.83448 1.46290 1.52267 1.31723 1.05841 1.19527 0.80247 0.84195 0.84031 1.90668 1.38671 1.26760 1.86918 1.22473 1.02055 1.00866 0.94786 0.85876 1.22984 0.98925 1.01636 0.93930 1.21468 0.88260 0.98897 1.02030 1.21848 0.97526 0.97223 0.98776 1.22590 0.95197 0.88548 0.95226 1.87856 1.34831 1.35167 1.72293 1.22654 0.93174 0.92351 0.93315 1.21854 0.98647 0.96473 0.98877 0.89573 0.97618 0.95443 0.95457 0.97598 0.89559 0.92928 0.92766 0.92771 0.76790 0.88130 0.87615 0.90616 0.90321 0.88881 0.92896 0.88654 0.92253 0.90444 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.36 4.96 -60.29 -0.30 -12.66 16 14 C 0.53 9.09 5.86 -10.99 -0.06 9.03 16 15 O -0.55 -11.42 16.50 5.55 0.09 -11.33 16 16 C -0.18 -2.31 5.88 -91.89 -0.54 -2.85 16 17 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.56 9.51 -26.86 -0.26 -1.82 16 19 C -0.11 -1.19 2.03 -154.55 -0.31 -1.51 16 20 C -0.12 -1.07 5.92 -26.43 -0.16 -1.22 16 21 C 0.06 0.62 6.84 37.33 0.26 0.88 16 22 O -0.38 -4.93 10.69 -35.23 -0.38 -5.30 16 23 C 0.06 0.79 6.84 37.32 0.26 1.05 16 24 C -0.12 -1.51 5.58 -26.43 -0.15 -1.65 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 26 H 0.00 0.10 6.59 -51.93 -0.34 -0.25 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.36 7.85 -51.93 -0.41 0.95 16 37 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.16 6.83 -51.93 -0.35 0.80 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -28.33 343.16 -8.11 -36.44 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.36 Total: 6.00 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.83 Total: -11.04 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.22 Total: -35.51 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.28 Total: -16.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.33 -8.11 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689986056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.471 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds