Wall clock time and date at job start Tue Mar 31 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46879 * 2 1 4 4 C 1.50703 * 109.47035 * 240.00112 * 2 1 3 5 5 H 1.07997 * 119.99972 * 240.00474 * 4 2 1 6 6 C 1.37874 * 120.00088 * 59.99956 * 4 2 1 7 7 N 1.31515 * 119.99861 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46749 * 59.99956 * 8 6 4 10 10 H 1.48498 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46981 * 300.00001 * 8 6 4 12 12 C 1.52995 * 109.46918 * 119.99933 * 2 1 3 13 13 N 1.46496 * 109.47425 * 299.99797 * 12 2 1 14 14 C 1.34777 * 119.99961 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99949 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.55670 * 303.18941 * 16 14 13 18 18 C 1.53062 * 117.50840 * 157.41940 * 16 14 13 19 19 C 1.52696 * 59.93291 * 252.53431 * 18 16 14 20 20 C 1.53252 * 117.88281 * 107.78062 * 19 18 16 21 21 C 1.53326 * 108.48485 * 196.26328 * 20 19 18 22 22 O 1.42870 * 109.32047 * 306.01343 * 21 20 19 23 23 C 1.42877 * 114.51134 * 64.37099 * 22 21 20 24 24 C 1.53244 * 117.88483 * 252.21311 * 19 18 16 25 25 H 1.09004 * 109.47166 * 59.99706 * 1 2 3 26 26 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46960 * 299.99915 * 1 2 3 28 28 H 1.09000 * 109.47256 * 60.00266 * 3 2 1 29 29 H 1.09002 * 109.47162 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47730 * 299.99662 * 3 2 1 31 31 H 0.97005 * 120.00275 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47327 * 60.00438 * 12 2 1 33 33 H 1.09003 * 109.46946 * 179.97438 * 12 2 1 34 34 H 0.96999 * 120.00039 * 0.02562 * 13 12 2 35 35 H 1.09004 * 117.50206 * 0.02562 * 18 16 14 36 36 H 1.08993 * 117.50474 * 145.06162 * 18 16 14 37 37 H 1.09003 * 109.63353 * 315.96436 * 20 19 18 38 38 H 1.09007 * 109.63611 * 76.56089 * 20 19 18 39 39 H 1.09005 * 109.49581 * 186.06172 * 21 20 19 40 40 H 1.08999 * 109.52527 * 65.98977 * 21 20 19 41 41 H 1.09001 * 109.48961 * 175.67738 * 23 22 21 42 42 H 1.08997 * 109.52377 * 55.60217 * 23 22 21 43 43 H 1.09000 * 109.63846 * 283.43832 * 24 19 18 44 44 H 1.08998 * 109.63294 * 44.04312 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4198 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5749 -1.4769 3.7807 16 6 1.3749 0.2192 4.9000 17 1 1.6356 1.2751 4.9731 18 6 1.3052 -0.5841 6.2009 19 6 0.0220 -0.2136 5.4609 20 6 -0.7316 -1.3300 4.7298 21 6 -1.7187 -0.6880 3.7479 22 8 -2.5488 0.2387 4.4502 23 6 -1.8524 1.3569 5.0035 24 6 -0.8751 0.8648 6.0777 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 0.7087 1.1613 -3.4844 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7216 1.2490 34 1 0.9938 0.7578 2.3564 35 1 1.6235 -1.6261 6.1667 36 1 1.5205 -0.0569 7.1303 37 1 -0.0234 -1.9527 4.1829 38 1 -1.2765 -1.9380 5.4521 39 1 -2.3390 -1.4627 3.2969 40 1 -1.1672 -0.1636 2.9675 41 1 -2.5685 2.0459 5.4514 42 1 -1.2996 1.8681 4.2154 43 1 -1.4323 0.4434 6.9144 44 1 -0.2623 1.6970 6.4240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689986078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:33 Heat of formation + Delta-G solvation = -75.911679 kcal Electronic energy + Delta-G solvation = -23541.250704 eV Core-core repulsion = 20265.717628 eV Total energy + Delta-G solvation = -3275.533076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47107 -38.65585 -36.79371 -35.92203 -33.26642 -31.34345 -30.88496 -30.17152 -26.17101 -25.76179 -25.24693 -23.85241 -23.45744 -22.63878 -20.21702 -18.96815 -18.67863 -17.02062 -16.28874 -16.07712 -15.83947 -15.15885 -15.06282 -14.86470 -14.64807 -14.05206 -13.65262 -13.37725 -13.14756 -12.90476 -12.64052 -12.49595 -12.23106 -12.00991 -11.51329 -11.36256 -11.20859 -11.15620 -10.87258 -10.81734 -10.74101 -10.42786 -10.41260 -10.24057 -10.06797 -9.66223 -9.55656 -9.38927 -9.18320 -8.81523 -8.46959 -8.33233 -6.03698 -4.14005 2.86241 3.28985 3.33484 3.36529 3.53164 3.76446 3.83692 4.38188 4.47876 4.59090 4.69517 4.78032 4.91767 5.12893 5.22980 5.24676 5.38987 5.41385 5.51538 5.58117 5.63708 5.69640 5.75722 5.96393 5.98191 6.06733 6.13112 6.21409 6.29458 6.48203 6.74875 6.79573 6.90645 6.98611 7.00692 7.17440 7.32584 7.52978 7.67391 7.98372 8.03050 8.13570 8.36363 8.68351 8.86487 9.51962 10.97616 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.004628 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.329572 B = 6048.873179 C = 6578.234638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.535 3.465 15 O -0.551 6.551 16 C -0.181 4.181 17 H 0.123 0.877 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.121 4.121 21 C 0.062 3.938 22 O -0.383 6.383 23 C 0.061 3.939 24 C -0.116 4.116 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.005 0.995 28 H 0.005 0.995 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 2.422 15.326 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.430 6.430 16 C -0.202 4.202 17 H 0.141 0.859 18 C -0.175 4.175 19 C -0.107 4.107 20 C -0.159 4.159 21 C -0.015 4.015 22 O -0.301 6.301 23 C -0.016 4.016 24 C -0.154 4.154 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.656 1.806 15.225 16.023 hybrid contribution 0.564 0.041 -0.938 1.095 sum -4.092 1.846 14.287 14.976 Atomic orbital electron populations 1.21831 0.97707 0.99122 1.00033 1.18343 0.92801 0.92708 0.90535 1.21832 0.98582 0.98391 1.00048 1.20934 1.31592 1.12124 0.89893 0.92538 1.24870 0.94823 0.94907 0.98825 1.69790 1.36552 1.22721 1.23357 0.86636 0.79230 0.79808 0.82201 1.20274 1.21313 1.20303 1.21726 0.98154 0.95743 0.83452 1.46286 1.52236 1.31754 1.05841 1.19526 0.80252 0.84189 0.84030 1.90666 1.38683 1.26750 1.86914 1.22477 1.02056 1.00861 0.94790 0.85878 1.22985 0.98922 1.01637 0.93929 1.21467 0.88259 0.98897 1.02030 1.21856 0.98654 0.96470 0.98873 1.22653 0.93157 0.92375 0.93312 1.87857 1.34830 1.35171 1.72284 1.22590 0.95213 0.88537 0.95223 1.21845 0.97517 0.97233 0.98775 0.89573 0.95442 0.97613 0.97596 0.95459 0.89565 0.92930 0.92773 0.92766 0.76789 0.87613 0.88131 0.90239 0.90444 0.88659 0.92252 0.88886 0.92892 0.90320 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.75 4.50 -4.05 -0.02 2.73 16 13 N -0.71 -12.36 4.96 -60.30 -0.30 -12.66 16 14 C 0.53 9.10 5.86 -10.98 -0.06 9.03 16 15 O -0.55 -11.42 16.50 5.56 0.09 -11.33 16 16 C -0.18 -2.31 5.88 -91.88 -0.54 -2.85 16 17 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.56 9.51 -26.85 -0.26 -1.82 16 19 C -0.11 -1.19 2.03 -154.55 -0.31 -1.51 16 20 C -0.12 -1.51 5.58 -26.43 -0.15 -1.65 16 21 C 0.06 0.79 6.84 37.33 0.26 1.05 16 22 O -0.38 -4.93 10.69 -35.23 -0.38 -5.30 16 23 C 0.06 0.62 6.84 37.33 0.26 0.88 16 24 C -0.12 -1.07 5.92 -26.43 -0.16 -1.22 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.00 0.10 6.59 -51.93 -0.34 -0.25 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 35 H 0.11 1.36 7.85 -51.93 -0.41 0.95 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.16 6.83 -51.93 -0.35 0.80 16 38 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -28.33 343.16 -8.11 -36.44 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.36 Total: 6.00 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.83 Total: -11.05 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.22 Total: -35.50 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.28 Total: -16.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.33 -8.11 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689986078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.473 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds