Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99706 * 2 1 4 4 C 1.53005 * 109.46776 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47219 * 65.00192 * 4 3 2 6 6 C 1.46499 * 120.00084 * 270.00041 * 5 4 3 7 7 C 1.50700 * 109.46954 * 270.00052 * 6 5 4 8 8 H 1.08000 * 119.99913 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99862 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00042 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00004 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46889 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47296 * 119.99246 * 11 9 7 14 14 H 1.48505 * 109.46872 * 239.99816 * 11 9 7 15 15 C 1.34780 * 119.99808 * 89.99310 * 5 4 3 16 16 O 1.21610 * 119.99835 * 179.97438 * 15 5 4 17 17 C 1.47095 * 120.00045 * 0.02562 * 15 5 4 18 18 C 1.32996 * 119.99941 * 179.97438 * 17 15 5 19 19 C 1.51450 * 126.34148 * 180.02562 * 18 17 15 20 20 C 1.54274 * 106.88313 * 180.34912 * 19 18 17 21 21 C 1.54985 * 103.75149 * 23.10193 * 20 19 18 22 22 H 1.09006 * 110.83219 * 81.12912 * 21 20 19 23 23 C 1.53002 * 110.83201 * 204.70283 * 21 20 19 24 24 C 1.51931 * 126.38658 * 359.97438 * 18 17 15 25 25 H 1.08992 * 109.46938 * 300.00108 * 1 2 3 26 26 H 1.09002 * 109.46906 * 59.99738 * 1 2 3 27 27 H 1.08995 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47204 * 60.00448 * 3 2 1 29 29 H 1.08994 * 109.47573 * 300.00082 * 3 2 1 30 30 H 1.08994 * 109.47095 * 305.00180 * 4 3 2 31 31 H 1.08999 * 109.46725 * 185.00445 * 4 3 2 32 32 H 1.09001 * 109.46886 * 29.99919 * 6 5 4 33 33 H 1.08999 * 109.46968 * 149.99608 * 6 5 4 34 34 H 0.96998 * 119.99600 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.00485 * 359.97438 * 17 15 5 36 36 H 1.09002 * 109.98686 * 60.98001 * 19 18 17 37 37 H 1.09004 * 109.98055 * 299.71947 * 19 18 17 38 38 H 1.09008 * 110.57169 * 141.66636 * 20 19 18 39 39 H 1.08998 * 110.57362 * 264.53690 * 20 19 18 40 40 H 1.08995 * 109.47263 * 59.99884 * 23 21 20 41 41 H 1.08999 * 109.46830 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.47144 * 299.99461 * 23 21 20 43 43 H 1.08998 * 110.41946 * 37.48678 * 24 18 17 44 44 H 1.09003 * 110.56163 * 275.02119 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5018 -1.2980 -0.9412 8 1 6.2203 -0.5460 -0.6504 9 6 5.8614 -2.6291 -0.9483 10 7 4.9865 -3.5448 -1.3029 11 14 7.5909 -3.1319 -0.4528 12 1 8.3761 -1.9220 -0.0995 13 1 7.5255 -4.0400 0.7202 14 1 8.2462 -3.8332 -1.5860 15 6 4.2633 1.3331 -2.3200 16 8 4.6300 0.8179 -3.3588 17 6 4.1336 2.7955 -2.2300 18 6 4.4168 3.5544 -3.2849 19 6 4.3343 5.0651 -3.3518 20 6 4.7508 5.4738 -4.7799 21 6 4.4799 4.2007 -5.6212 22 1 3.4247 4.1274 -5.8847 23 6 5.3579 4.1795 -6.8741 24 6 4.8843 3.0674 -4.6460 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1766 0.0903 32 1 3.3858 -1.3631 -0.6714 33 1 3.9139 -1.2121 -2.3645 34 1 5.2395 -4.4812 -1.3075 35 1 3.8083 3.2531 -1.3075 36 1 5.0144 5.5080 -2.6242 37 1 3.3133 5.3915 -3.1537 38 1 4.1399 6.3042 -5.1342 39 1 5.8086 5.7350 -4.8104 40 1 6.4079 4.1904 -6.5822 41 1 5.1494 3.2769 -7.4485 42 1 5.1412 5.0562 -7.4845 43 1 4.3796 2.1385 -4.9115 44 1 5.9653 2.9275 -4.6520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754103371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -78.509904 kcal Electronic energy + Delta-G solvation = -22692.980687 eV Core-core repulsion = 19417.334943 eV Total energy + Delta-G solvation = -3275.645744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34669 -38.09741 -37.29826 -34.71695 -32.79610 -32.29210 -29.86829 -29.40784 -27.55090 -26.41100 -25.85624 -24.25673 -22.64870 -22.36468 -20.06587 -19.23897 -17.58502 -16.80433 -16.33138 -15.94837 -15.78596 -15.29297 -15.01899 -14.61689 -14.43869 -13.91016 -13.70629 -13.57033 -13.05024 -12.96016 -12.47330 -12.22397 -12.02816 -11.86624 -11.73545 -11.64065 -11.57329 -11.17165 -11.06245 -10.89088 -10.83575 -10.78272 -10.53807 -10.37906 -10.30596 -10.02472 -9.47545 -9.38520 -8.79055 -8.63853 -8.30254 -7.47356 -5.91155 -3.94893 1.84171 3.36723 3.43655 3.48012 3.97955 4.07227 4.17714 4.49839 4.58454 4.72070 4.90565 5.08980 5.25833 5.31211 5.34410 5.42543 5.44994 5.53141 5.54731 5.56844 5.58088 5.62412 5.66812 5.75288 5.79923 5.87080 5.89122 5.91274 5.93822 6.13266 6.14346 6.30846 6.39715 6.46936 6.74306 6.83591 7.40480 7.46449 7.66405 7.73109 8.07509 8.39878 8.61652 9.04915 9.26330 9.68997 11.16759 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.005356 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.534797 B = 5226.347502 C = 6805.416647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.586 5.586 6 C 0.250 3.750 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.536 3.464 16 O -0.541 6.541 17 C -0.212 4.212 18 C -0.049 4.049 19 C -0.099 4.099 20 C -0.119 4.119 21 C -0.102 4.102 22 H 0.074 0.926 23 C -0.142 4.142 24 C -0.095 4.095 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 17.895 -1.484 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.012 4.012 5 N -0.316 5.316 6 C 0.131 3.869 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.325 3.675 16 O -0.421 6.421 17 C -0.233 4.233 18 C -0.051 4.051 19 C -0.136 4.136 20 C -0.157 4.157 21 C -0.120 4.120 22 H 0.093 0.907 23 C -0.199 4.199 24 C -0.131 4.131 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.854 17.216 -2.035 18.298 hybrid contribution 0.634 -0.059 0.551 0.842 sum -5.220 17.158 -1.484 17.995 Atomic orbital electron populations 1.22692 0.82142 1.02549 0.99057 1.88107 1.18648 1.27012 1.95130 1.23133 0.95442 0.85376 0.99460 1.21516 0.91069 0.99051 0.89604 1.48054 1.64014 1.09805 1.09740 1.19288 0.96612 0.72240 0.98799 1.21526 0.97520 0.92171 1.44881 0.92649 1.24914 0.97269 0.96445 0.95491 1.69963 1.34185 1.00849 1.48370 0.86497 0.84759 0.78421 0.78038 1.19913 1.21067 1.21011 1.18291 0.78620 0.86504 0.84063 1.90694 1.47306 1.75028 1.29083 1.22253 1.08089 0.94148 0.98784 1.22792 0.92517 0.94751 0.95055 1.21286 1.01862 0.92514 0.97926 1.22442 1.01345 0.97573 0.94316 1.22200 0.99809 0.95034 0.94978 0.90721 1.21730 0.99632 1.01468 0.97081 1.21758 1.01851 0.99003 0.90499 0.94730 0.94646 0.89802 0.93251 0.93616 0.89157 0.89975 0.93741 0.94320 0.92983 0.86042 0.90494 0.90558 0.91621 0.91338 0.92593 0.92447 0.92986 0.88218 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.62 9.53 -35.23 -0.34 -6.96 16 3 C 0.04 0.65 6.28 37.16 0.23 0.89 16 4 C 0.11 1.91 5.53 -4.04 -0.02 1.89 16 5 N -0.59 -13.05 2.42 -176.46 -0.43 -13.47 16 6 C 0.25 6.87 4.98 -5.19 -0.03 6.84 16 7 C -0.52 -15.38 9.39 -34.44 -0.32 -15.70 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 11 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 15 C 0.54 11.70 7.62 -12.67 -0.10 11.61 16 16 O -0.54 -13.85 13.34 5.27 0.07 -13.78 16 17 C -0.21 -3.46 9.12 -37.81 -0.34 -3.80 16 18 C -0.05 -0.72 6.15 -100.19 -0.62 -1.34 16 19 C -0.10 -1.05 6.61 -26.85 -0.18 -1.23 16 20 C -0.12 -1.17 6.33 -25.02 -0.16 -1.32 16 21 C -0.10 -1.18 3.52 -88.58 -0.31 -1.49 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.14 -1.47 9.29 37.16 0.35 -1.12 16 24 C -0.09 -1.45 4.87 -26.28 -0.13 -1.58 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 31 H 0.08 1.12 6.09 -51.93 -0.32 0.80 16 32 H 0.04 1.27 7.11 -51.93 -0.37 0.90 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.12 1.60 6.22 -52.49 -0.33 1.27 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 1.84 6.27 -51.93 -0.33 1.52 16 44 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -34.55 356.61 -7.81 -42.36 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.59 Total: -1.13 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.61 Total: -3.12 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.31 Total: -40.26 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.27 Total: -20.74 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.55 -7.81 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754103371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.153 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds