Wall clock time and date at job start Tue Mar 31 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46815 * 294.99694 * 4 3 2 6 6 C 1.46501 * 119.99411 * 90.00097 * 5 4 3 7 7 C 1.50701 * 109.47435 * 90.00087 * 6 5 4 8 8 H 1.08004 * 119.99373 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00253 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00289 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46993 * 89.99609 * 11 9 7 13 13 H 1.48492 * 109.47465 * 210.00137 * 11 9 7 14 14 H 1.48504 * 109.46906 * 330.00278 * 11 9 7 15 15 C 1.34769 * 120.00462 * 269.99847 * 5 4 3 16 16 O 1.21611 * 120.00261 * 180.02562 * 15 5 4 17 17 C 1.47102 * 119.99922 * 0.02562 * 15 5 4 18 18 C 1.32990 * 120.00299 * 180.02562 * 17 15 5 19 19 C 1.51452 * 126.33912 * 359.68404 * 18 17 15 20 20 C 1.54283 * 106.84802 * 179.53069 * 19 18 17 21 21 C 1.54981 * 103.84047 * 337.23854 * 20 19 18 22 22 H 1.09007 * 110.83295 * 278.66422 * 21 20 19 23 23 C 1.53000 * 110.83700 * 155.08363 * 21 20 19 24 24 C 1.51845 * 126.34225 * 180.02562 * 18 17 15 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 29 29 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 30 30 H 1.08999 * 109.46878 * 54.99977 * 4 3 2 31 31 H 1.08996 * 109.46851 * 174.99773 * 4 3 2 32 32 H 1.09003 * 109.47053 * 209.99880 * 6 5 4 33 33 H 1.09000 * 109.47812 * 329.99681 * 6 5 4 34 34 H 0.97007 * 120.00755 * 180.02562 * 10 9 7 35 35 H 1.07999 * 119.99897 * 359.97438 * 17 15 5 36 36 H 1.09003 * 109.97932 * 299.01559 * 19 18 17 37 37 H 1.08997 * 109.98466 * 60.31401 * 19 18 17 38 38 H 1.08993 * 110.71119 * 218.54989 * 20 19 18 39 39 H 1.09007 * 110.34428 * 95.73809 * 20 19 18 40 40 H 1.09004 * 109.46531 * 305.63063 * 23 21 20 41 41 H 1.08993 * 109.47358 * 65.62857 * 23 21 20 42 42 H 1.09003 * 109.46942 * 185.63287 * 23 21 20 43 43 H 1.09002 * 110.44169 * 322.49841 * 24 18 17 44 44 H 1.08994 * 110.44376 * 85.02781 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9767 0.5642 1.2509 6 6 4.1063 -0.8924 1.3403 7 6 5.5018 -1.2980 0.9412 8 1 6.2201 -0.5460 0.6498 9 6 5.8614 -2.6289 0.9482 10 7 4.9869 -3.5446 1.3036 11 14 7.5910 -3.1317 0.4529 12 1 8.4653 -3.1455 1.6531 13 1 7.5584 -4.4877 -0.1514 14 1 8.1242 -2.1614 -0.5368 15 6 4.2633 1.3330 2.3200 16 8 4.6300 0.8179 3.3588 17 6 4.1327 2.7955 2.2304 18 6 4.4160 3.5543 3.2852 19 6 4.8760 3.0674 4.6435 20 6 5.0840 4.3195 5.5205 21 6 5.3042 5.4591 4.4935 22 1 6.3348 5.4673 4.1385 23 6 4.9231 6.8139 5.0938 24 6 4.3313 5.0689 3.3528 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.8508 0.5686 -0.8427 31 1 3.9784 2.1767 -0.0903 32 1 3.9139 -1.2121 2.3644 33 1 3.3859 -1.3631 0.6713 34 1 5.2400 -4.4810 1.3089 35 1 3.8074 3.2531 1.3078 36 1 4.1160 2.4227 5.0850 37 1 5.8154 2.5233 4.5456 38 1 5.9609 4.2029 6.1571 39 1 4.1957 4.5126 6.1221 40 1 3.9025 6.7685 5.4741 41 1 5.6045 7.0544 5.9098 42 1 4.9905 7.5838 4.3251 43 1 4.6535 5.5108 2.4099 44 1 3.3159 5.3830 3.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754103377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:45 Heat of formation + Delta-G solvation = -79.810628 kcal Electronic energy + Delta-G solvation = -22622.767018 eV Core-core repulsion = 19347.064871 eV Total energy + Delta-G solvation = -3275.702147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33554 -38.12937 -37.31140 -34.72205 -32.78134 -32.28522 -29.76305 -29.47868 -27.72266 -26.53010 -25.85762 -24.00875 -22.64617 -22.37729 -20.20111 -19.29314 -17.53586 -16.78435 -16.32771 -16.05858 -15.57550 -15.46262 -14.93639 -14.61286 -14.43441 -13.91455 -13.71513 -13.47707 -13.28462 -12.91648 -12.76731 -12.23382 -11.96668 -11.85861 -11.70592 -11.59394 -11.52405 -11.16403 -11.00375 -10.91043 -10.84484 -10.69958 -10.66391 -10.53338 -10.31906 -10.03556 -9.49435 -9.38301 -8.79072 -8.68129 -8.29712 -7.47101 -5.90772 -3.94707 1.84655 3.38322 3.43746 3.46333 3.97968 4.08242 4.18024 4.48250 4.57239 4.64330 4.83010 5.12944 5.19794 5.34350 5.39082 5.42889 5.44798 5.49150 5.49665 5.55313 5.58181 5.61052 5.63577 5.67242 5.74632 5.80176 5.83024 5.90403 5.96747 6.05530 6.18661 6.30685 6.35951 6.44797 6.71145 6.80347 7.40796 7.46670 7.66388 7.73025 8.07702 8.40114 8.62058 9.04797 9.26365 9.69147 11.17057 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.005065 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.752698 B = 5527.153864 C = 7080.118005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.113 3.887 5 N -0.586 5.586 6 C 0.250 3.750 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.535 3.465 16 O -0.542 6.542 17 C -0.212 4.212 18 C -0.049 4.049 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.098 4.098 22 H 0.078 0.922 23 C -0.142 4.142 24 C -0.093 4.093 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.261 0.739 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 18.715 0.951 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.012 4.012 5 N -0.317 5.317 6 C 0.131 3.869 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.324 3.676 16 O -0.421 6.421 17 C -0.232 4.232 18 C -0.051 4.051 19 C -0.127 4.127 20 C -0.162 4.162 21 C -0.116 4.116 22 H 0.096 0.904 23 C -0.200 4.200 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.747 18.026 1.505 18.979 hybrid contribution 0.639 -0.114 -0.511 0.826 sum -5.108 17.911 0.994 18.652 Atomic orbital electron populations 1.22694 0.82146 1.02546 0.99055 1.88106 1.18644 1.27016 1.95128 1.23136 0.95444 0.85371 0.99454 1.21515 0.91068 0.99039 0.89605 1.48044 1.64037 1.09790 1.09786 1.19278 0.96578 0.72253 0.98776 1.21490 0.97536 0.92167 1.45015 0.92706 1.24908 0.97258 0.96432 0.95491 1.69951 1.34214 1.00896 1.48305 0.86553 0.84872 0.77653 0.78628 1.20701 1.21243 1.20024 1.18297 0.78711 0.86508 0.84085 1.90727 1.47102 1.75024 1.29290 1.22282 1.07960 0.94153 0.98846 1.22765 0.92534 0.94840 0.94991 1.21242 1.03063 0.96670 0.91717 1.22551 1.01487 0.94676 0.97440 1.22126 0.99355 0.94713 0.95443 0.90356 1.21754 1.01386 0.96277 1.00540 1.21610 1.00098 0.92126 0.99170 0.94729 0.94648 0.89804 0.93254 0.93617 0.89172 0.89981 0.94349 0.93747 0.92925 0.86003 0.89792 0.89514 0.91494 0.91670 0.92618 0.92625 0.92747 0.90891 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.64 9.53 -35.23 -0.34 -6.97 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.11 1.92 5.53 -4.04 -0.02 1.90 16 5 N -0.59 -13.09 2.42 -176.45 -0.43 -13.51 16 6 C 0.25 6.90 4.98 -5.19 -0.03 6.87 16 7 C -0.52 -15.44 9.39 -34.44 -0.32 -15.76 16 8 H 0.05 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 11 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.53 11.71 7.62 -12.67 -0.10 11.61 16 16 O -0.54 -13.93 13.68 5.27 0.07 -13.85 16 17 C -0.21 -3.45 9.13 -37.81 -0.35 -3.80 16 18 C -0.05 -0.72 6.15 -100.23 -0.62 -1.34 16 19 C -0.09 -1.38 4.82 -26.84 -0.13 -1.51 16 20 C -0.12 -1.41 6.32 -25.01 -0.16 -1.57 16 21 C -0.10 -0.98 3.53 -88.56 -0.31 -1.29 16 22 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 23 C -0.14 -1.12 9.28 37.16 0.34 -0.77 16 24 C -0.09 -0.99 6.10 -26.31 -0.16 -1.15 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 31 H 0.08 1.12 6.10 -51.93 -0.32 0.81 16 32 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 33 H 0.04 1.27 7.11 -51.93 -0.37 0.90 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.12 1.60 6.23 -52.49 -0.33 1.27 16 36 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 37 H 0.09 1.53 7.64 -51.93 -0.40 1.13 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 8.02 -51.92 -0.42 0.26 16 40 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -34.66 357.37 -7.83 -42.49 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.64 Total: -1.58 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.60 Total: -2.67 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.31 Total: -40.34 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.26 Total: -20.83 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.66 -7.83 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754103377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.322 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds