Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00068 * 4 3 2 6 6 C 1.46495 * 120.00341 * 89.99808 * 5 4 3 7 7 C 1.50695 * 109.47201 * 89.99913 * 6 5 4 8 8 H 1.07998 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00314 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00511 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99792 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47241 * 89.99431 * 11 9 7 13 13 H 1.48499 * 109.47204 * 209.99769 * 11 9 7 14 14 H 1.48505 * 109.47098 * 330.00003 * 11 9 7 15 15 C 1.34780 * 119.99848 * 269.99967 * 5 4 3 16 16 O 1.21619 * 119.99852 * 359.97438 * 15 5 4 17 17 C 1.47099 * 120.00033 * 180.02562 * 15 5 4 18 18 C 1.32995 * 119.99790 * 179.97438 * 17 15 5 19 19 C 1.51836 * 126.34292 * 359.68985 * 18 17 15 20 20 C 1.55133 * 104.31878 * 156.13282 * 19 18 17 21 21 C 1.54981 * 102.22381 * 37.92985 * 20 19 18 22 22 H 1.09005 * 110.56725 * 81.29970 * 21 20 19 23 23 C 1.52997 * 110.57096 * 204.16819 * 21 20 19 24 24 C 1.51449 * 126.33744 * 179.97438 * 18 17 15 25 25 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 28 28 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 29 29 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 30 30 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 31 31 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 32 32 H 1.08993 * 109.47288 * 210.00240 * 6 5 4 33 33 H 1.09003 * 109.46708 * 330.00409 * 6 5 4 34 34 H 0.96996 * 120.00479 * 179.97438 * 10 9 7 35 35 H 1.07997 * 119.99856 * 359.97438 * 17 15 5 36 36 H 1.09001 * 110.44527 * 274.96337 * 19 18 17 37 37 H 1.08999 * 110.44638 * 37.49274 * 19 18 17 38 38 H 1.09004 * 111.03974 * 279.68722 * 20 19 18 39 39 H 1.08999 * 110.90207 * 156.11351 * 20 19 18 40 40 H 1.09000 * 109.47068 * 175.79104 * 23 21 20 41 41 H 1.09001 * 109.47303 * 295.78629 * 23 21 20 42 42 H 1.08996 * 109.47004 * 55.78568 * 23 21 20 43 43 H 1.09001 * 109.98528 * 299.68494 * 24 18 17 44 44 H 1.09001 * 109.98303 * 60.99079 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2863 1.4007 -2.4148 7 6 5.7442 1.7811 -2.3845 8 1 6.3761 1.4344 -1.5803 9 6 6.2714 2.5711 -3.3840 10 7 7.5435 2.9035 -3.3574 11 14 5.1785 3.1702 -4.7754 12 1 4.5748 4.4751 -4.4039 13 1 5.9908 3.3335 -6.0078 14 1 4.1008 2.1783 -5.0207 15 6 4.0948 -0.7755 -1.3355 16 8 3.8373 -1.4696 -0.3706 17 6 4.5375 -1.3982 -2.5925 18 6 4.6556 -2.7204 -2.6740 19 6 4.3795 -3.7186 -1.5637 20 6 4.0658 -5.0432 -2.3078 21 6 5.0649 -4.9990 -3.4917 22 1 6.0527 -5.3309 -3.1718 23 6 4.5590 -5.8552 -4.6543 24 6 5.0961 -3.5088 -3.8898 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.9784 2.1766 0.0889 31 1 3.8514 0.5683 0.8410 32 1 4.0745 0.8458 -3.3287 33 1 3.6748 2.3026 -2.3872 34 1 7.9145 3.4589 -4.0607 35 1 4.7665 -0.7817 -3.4491 36 1 5.2580 -3.8346 -0.9289 37 1 3.5204 -3.4022 -0.9721 38 1 3.0373 -5.0551 -2.6687 39 1 4.2604 -5.9040 -1.6681 40 1 5.2356 -5.7523 -5.5027 41 1 4.5194 -6.9000 -4.3459 42 1 3.5615 -5.5235 -4.9426 43 1 4.4106 -3.3299 -4.7182 44 1 6.1080 -3.2204 -4.1742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754103383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -76.712430 kcal Electronic energy + Delta-G solvation = -22909.305931 eV Core-core repulsion = 19633.738132 eV Total energy + Delta-G solvation = -3275.567799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.31384 -38.06847 -37.20585 -34.93747 -32.64662 -32.24009 -30.21194 -29.31207 -27.57562 -26.92753 -25.95761 -23.82536 -22.62409 -22.13515 -20.12934 -19.10930 -17.34233 -16.99976 -16.55707 -16.16589 -15.72028 -15.36455 -14.95697 -14.67426 -14.20898 -13.99031 -13.62846 -13.34951 -13.01860 -12.88888 -12.62121 -12.38759 -12.24220 -12.00363 -11.77504 -11.63538 -11.49246 -11.30554 -11.04022 -10.79417 -10.76763 -10.66333 -10.60800 -10.50252 -10.28451 -10.15899 -9.59589 -9.37048 -8.77833 -8.65762 -8.48819 -7.58084 -6.18450 -4.19206 2.07538 3.18156 3.26669 3.27508 3.91898 4.09966 4.25065 4.28562 4.68794 4.86590 4.98424 5.12188 5.34383 5.40219 5.40909 5.42947 5.53275 5.58985 5.61586 5.65589 5.68608 5.72654 5.78329 5.83510 5.90346 5.95996 6.01749 6.12257 6.16640 6.23476 6.34789 6.40794 6.47690 6.53162 6.62161 6.73887 7.01021 7.11021 7.41194 7.48640 7.56926 8.26037 8.51468 8.88837 9.17783 9.41877 10.94492 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.006620 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.212267 B = 4228.735653 C = 6112.551690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.588 5.588 6 C 0.209 3.791 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.892 5.892 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.557 3.443 16 O -0.553 6.553 17 C -0.189 4.189 18 C -0.061 4.061 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.098 4.098 22 H 0.075 0.925 23 C -0.143 4.143 24 C -0.094 4.094 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -9.992 0.340 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.318 5.318 6 C 0.088 3.912 7 C -0.575 4.575 8 H 0.096 0.904 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.697 3.303 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.348 3.652 16 O -0.434 6.434 17 C -0.209 4.209 18 C -0.062 4.062 19 C -0.132 4.132 20 C -0.159 4.159 21 C -0.117 4.117 22 H 0.093 0.907 23 C -0.200 4.200 24 C -0.131 4.131 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.166 -10.382 0.731 14.549 hybrid contribution -0.519 1.027 -1.008 1.530 sum -10.685 -9.355 -0.277 14.204 Atomic orbital electron populations 1.22668 0.82618 1.02101 0.99135 1.88136 1.18114 1.27214 1.95141 1.23077 0.95587 0.85062 0.99611 1.21305 0.90757 0.99572 0.88455 1.47635 1.65216 1.05876 1.13109 1.19798 0.96984 0.90255 0.84202 1.21433 0.92979 1.32036 1.11069 0.90375 1.24878 0.94852 0.95479 0.97592 1.69892 1.12373 1.36777 1.33976 0.86947 0.81069 0.79905 0.82422 1.19980 1.20903 1.18854 1.18222 0.77044 0.81898 0.88031 1.90638 1.51916 1.61859 1.38992 1.22205 1.05525 0.94115 0.99059 1.22671 0.93853 0.93512 0.96209 1.21661 1.03392 0.91924 0.96244 1.22693 0.98845 0.97830 0.96552 1.21982 0.99465 0.94583 0.95645 0.90655 1.21796 1.01035 0.99352 0.97818 1.21343 1.01856 0.93665 0.96278 0.94751 0.90204 0.94759 0.93200 0.93491 0.88834 0.89898 0.94696 0.95705 0.92441 0.84832 0.90518 0.88417 0.91591 0.91744 0.92770 0.92831 0.92650 0.90529 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.48 9.49 -42.94 -0.41 -6.89 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.28 5.86 -4.04 -0.02 2.26 16 5 N -0.59 -12.60 2.44 -176.46 -0.43 -13.03 16 6 C 0.21 4.74 3.94 -5.20 -0.02 4.72 16 7 C -0.54 -14.35 9.94 -34.44 -0.34 -14.70 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 11 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 15 C 0.56 12.17 7.25 -12.66 -0.09 12.08 16 16 O -0.55 -12.61 12.54 -2.45 -0.03 -12.64 16 17 C -0.19 -3.78 9.12 -37.81 -0.34 -4.12 16 18 C -0.06 -1.04 6.15 -100.24 -0.62 -1.66 16 19 C -0.10 -1.54 5.44 -26.19 -0.14 -1.68 16 20 C -0.12 -1.52 6.39 -24.56 -0.16 -1.68 16 21 C -0.10 -1.16 3.49 -88.91 -0.31 -1.47 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 C -0.14 -1.39 9.12 37.16 0.34 -1.06 16 24 C -0.09 -1.31 6.19 -26.85 -0.17 -1.48 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.08 1.60 7.42 -51.93 -0.39 1.21 16 32 H 0.04 0.79 5.15 -51.93 -0.27 0.52 16 33 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 35 H 0.13 2.73 6.22 -52.49 -0.33 2.40 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.78 6.25 -51.93 -0.32 1.46 16 38 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.54 8.13 -51.93 -0.42 0.11 16 43 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -30.97 352.86 -7.67 -38.65 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.60 Total: 3.06 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.63 Total: -4.36 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.34 Total: -38.41 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.44 Total: -19.53 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.97 -7.67 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754103383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.067 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds