Wall clock time and date at job start Tue Mar 31 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00164 * 2 1 3 5 5 N 1.46504 * 109.46883 * 175.00371 * 4 2 1 6 6 C 1.46499 * 119.99661 * 269.99401 * 5 4 2 7 7 C 1.50699 * 109.46902 * 90.00395 * 6 5 4 8 8 H 1.07998 * 120.00043 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00065 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99381 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00003 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47170 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47185 * 120.00364 * 11 9 7 14 14 H 1.48508 * 109.46882 * 240.00170 * 11 9 7 15 15 C 1.34774 * 120.00336 * 90.00128 * 5 4 2 16 16 O 1.21274 * 120.00360 * 179.97438 * 15 5 4 17 17 C 1.50708 * 119.99656 * 359.97438 * 15 5 4 18 18 H 1.08995 * 115.56689 * 34.22242 * 17 15 5 19 19 C 1.53182 * 117.51928 * 248.36295 * 17 15 5 20 20 C 1.52123 * 59.78025 * 252.58029 * 19 17 15 21 21 C 1.54026 * 121.47458 * 249.14950 * 20 19 17 22 22 C 1.55187 * 101.82923 * 195.69864 * 21 20 19 23 23 O 1.44454 * 103.63438 * 36.32436 * 22 21 20 24 24 C 1.43990 * 107.04830 * 320.43392 * 23 22 21 25 25 H 1.08997 * 109.47474 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.46922 * 60.00471 * 1 2 3 27 27 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47521 * 239.99933 * 2 1 3 29 29 H 1.09003 * 109.47743 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47112 * 300.00053 * 3 2 1 31 31 H 1.09006 * 109.47389 * 59.99876 * 3 2 1 32 32 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 33 33 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 34 34 H 1.09000 * 109.47241 * 210.00440 * 6 5 4 35 35 H 1.09000 * 109.47127 * 330.00198 * 6 5 4 36 36 H 0.97003 * 119.99012 * 179.97438 * 10 9 7 37 37 H 1.09004 * 117.52178 * 0.02562 * 19 17 15 38 38 H 1.08996 * 117.52189 * 145.15080 * 19 17 15 39 39 H 1.09003 * 110.95723 * 313.82730 * 21 20 19 40 40 H 1.08996 * 110.96653 * 77.56289 * 21 20 19 41 41 H 1.09003 * 110.59084 * 277.78955 * 22 21 20 42 42 H 1.09000 * 110.59338 * 154.86588 * 22 21 20 43 43 H 1.08992 * 109.97273 * 266.93651 * 24 23 22 44 44 H 1.09003 * 109.97323 * 145.66008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5613 7 6 4.3387 -1.7172 -0.9051 8 1 4.0383 -0.7691 -1.3260 9 6 4.9179 -2.6759 -1.7092 10 7 5.2841 -3.8303 -1.1963 11 14 5.1824 -2.3351 -3.5266 12 1 4.6884 -0.9730 -3.8519 13 1 6.6310 -2.4240 -3.8413 14 1 4.4386 -3.3373 -4.3315 15 6 4.2676 0.1492 1.7157 16 8 5.4762 0.0620 1.6675 17 6 3.6237 1.3484 2.3627 18 1 2.6882 1.1543 2.8872 19 6 3.7732 2.6993 1.6561 20 6 4.5434 2.4158 2.9370 21 6 4.2085 3.1408 4.2540 22 6 5.4699 2.8465 5.1088 23 8 6.5485 2.8852 4.1487 24 6 6.0679 2.2521 2.9481 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.7516 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 5.0863 -2.1898 1.0370 35 1 3.4769 -2.8599 0.6779 36 1 5.6913 -4.5049 -1.7621 37 1 4.3368 2.7202 0.7233 38 1 2.9355 3.3941 1.7155 39 1 4.0899 4.2119 4.0901 40 1 3.3168 2.7176 4.7163 41 1 5.4004 1.8602 5.5677 42 1 5.6056 3.6155 5.8693 43 1 6.3287 1.1938 2.9554 44 1 6.5007 2.7365 2.0728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763994991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:37 Heat of formation + Delta-G solvation = -55.948307 kcal Electronic energy + Delta-G solvation = -23726.618706 eV Core-core repulsion = 20451.951307 eV Total energy + Delta-G solvation = -3274.667399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44670 -38.58813 -36.27114 -35.68741 -33.48225 -32.28903 -30.30201 -28.06402 -27.46498 -26.49455 -25.50254 -24.20332 -22.60915 -22.00837 -20.19139 -19.55294 -18.09616 -16.92658 -16.48092 -15.91819 -15.78920 -15.10933 -14.80877 -14.67895 -14.19459 -14.09273 -13.65983 -13.34709 -13.06037 -12.84892 -12.56430 -12.35840 -12.18808 -11.97491 -11.69692 -11.67204 -11.39589 -11.25135 -11.15513 -10.92620 -10.78507 -10.60971 -10.53399 -10.37380 -10.00619 -9.96759 -9.82505 -9.59093 -9.43093 -8.58773 -8.43851 -7.65514 -6.04939 -4.08757 3.10323 3.28584 3.36739 3.39778 3.71044 4.01973 4.13908 4.40688 4.47446 4.79604 4.86645 4.98788 5.14118 5.22892 5.24673 5.28787 5.31676 5.43837 5.51752 5.54095 5.68227 5.71099 5.75507 5.85396 5.89418 5.92974 5.99735 6.03544 6.09407 6.12717 6.14139 6.25717 6.41297 6.48951 6.65803 6.83778 7.03559 7.07364 7.43315 7.55715 7.91867 8.22930 8.40885 8.90078 9.08760 9.56132 11.03345 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.005820 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.827249 B = 4810.139762 C = 5718.072744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.121 3.879 5 N -0.590 5.590 6 C 0.245 3.755 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.535 3.465 16 O -0.538 6.538 17 C -0.166 4.166 18 H 0.119 0.881 19 C -0.128 4.128 20 C -0.140 4.140 21 C -0.119 4.119 22 C 0.050 3.950 23 O -0.386 6.386 24 C 0.073 3.927 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 12.180 8.683 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.207 4.207 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.126 3.874 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.322 3.678 16 O -0.416 6.416 17 C -0.187 4.187 18 H 0.137 0.863 19 C -0.165 4.165 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.027 4.027 23 O -0.305 6.305 24 C -0.003 4.003 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.223 11.994 8.632 16.911 hybrid contribution -0.340 -0.094 -1.215 1.265 sum -8.563 11.900 7.417 16.430 Atomic orbital electron populations 1.21768 0.95677 1.01435 1.01054 1.21603 0.94652 0.96908 1.00675 1.22240 1.02217 0.95787 1.00497 1.21517 0.81377 1.00612 0.96801 1.48175 1.05433 1.22368 1.55990 1.19316 0.94168 0.81261 0.92646 1.21452 1.40036 1.01065 0.93298 0.92223 1.24932 0.95369 0.95042 0.98781 1.69945 1.41787 1.05870 1.35810 0.86495 0.77989 0.78186 0.85073 1.19820 1.20927 1.21025 1.19344 0.86814 0.82874 0.78776 1.90574 1.13972 1.78105 1.58970 1.22459 1.00980 0.90575 1.04726 0.86284 1.23010 1.01889 0.95862 0.95732 1.22280 0.95341 1.01022 0.95468 1.22606 0.98895 1.00540 0.93601 1.23466 0.85833 1.01065 0.92328 1.88884 1.36488 1.80888 1.24228 1.23009 0.89549 1.00681 0.87014 0.93312 0.92973 0.92775 0.89022 0.91546 0.93623 0.93044 0.91978 0.90877 0.93884 0.95096 0.92825 0.87750 0.87819 0.90097 0.90324 0.92297 0.89427 0.87858 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.12 -1.78 3.13 -90.62 -0.28 -2.07 16 3 C -0.15 -2.09 6.77 37.15 0.25 -1.84 16 4 C 0.12 1.91 5.00 -4.04 -0.02 1.89 16 5 N -0.59 -12.00 2.34 -175.06 -0.41 -12.41 16 6 C 0.25 6.24 5.20 -5.19 -0.03 6.21 16 7 C -0.52 -14.25 8.82 -34.44 -0.30 -14.55 16 8 H 0.06 1.63 7.24 -52.49 -0.38 1.25 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.54 10.67 6.25 -10.98 -0.07 10.60 16 16 O -0.54 -12.86 12.96 5.56 0.07 -12.79 16 17 C -0.17 -2.43 3.63 -92.11 -0.33 -2.76 16 18 H 0.12 1.47 6.43 -51.93 -0.33 1.13 16 19 C -0.13 -1.64 6.68 -27.08 -0.18 -1.82 16 20 C -0.14 -1.94 2.43 -154.68 -0.38 -2.32 16 21 C -0.12 -1.29 6.94 -25.04 -0.17 -1.46 16 22 C 0.05 0.60 7.73 38.32 0.30 0.89 16 23 O -0.39 -6.15 11.53 -35.23 -0.41 -6.55 16 24 C 0.07 1.22 6.56 37.33 0.24 1.46 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.71 6.95 -51.93 -0.36 1.35 16 29 H 0.07 1.09 4.25 -51.93 -0.22 0.87 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.59 6.23 -51.93 -0.32 0.27 16 32 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 33 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.10 1.50 7.42 -51.93 -0.39 1.11 16 38 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 2.03 5.54 -51.93 -0.29 1.75 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -31.56 337.29 -7.82 -39.38 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.15 Total: 1.71 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.73 Total: -5.47 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.33 Total: -38.03 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.33 Total: -19.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.56 -7.82 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763994991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.564 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds