Wall clock time and date at job start Tue Mar 31 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47063 * 119.99750 * 2 1 3 5 5 N 1.46498 * 109.47132 * 174.29711 * 4 2 1 6 6 C 1.46501 * 119.99987 * 276.66659 * 5 4 2 7 7 C 1.50695 * 109.47233 * 274.92791 * 6 5 4 8 8 H 1.07997 * 120.00432 * 355.02501 * 7 6 5 9 9 C 1.37879 * 119.99925 * 175.03218 * 7 6 5 10 10 N 1.31513 * 120.00430 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00079 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46599 * 269.99623 * 11 9 7 13 13 H 1.48500 * 109.47055 * 149.99740 * 11 9 7 14 14 H 1.48492 * 109.47143 * 29.99416 * 11 9 7 15 15 C 1.34769 * 119.99836 * 96.66929 * 5 4 2 16 16 O 1.21287 * 119.99841 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00211 * 359.97438 * 15 5 4 18 18 H 1.09002 * 115.56647 * 34.22591 * 17 15 5 19 19 C 1.53185 * 117.52145 * 248.35220 * 17 15 5 20 20 C 1.52099 * 59.77113 * 252.57818 * 19 17 15 21 21 C 1.53713 * 121.74118 * 111.08783 * 20 19 17 22 22 C 1.54696 * 103.69383 * 143.51392 * 21 20 19 23 23 O 1.44495 * 104.87299 * 23.83060 * 22 21 20 24 24 C 1.44641 * 105.46300 * 320.02483 * 23 22 21 25 25 H 1.08997 * 109.47113 * 299.99819 * 1 2 3 26 26 H 1.09003 * 109.47024 * 60.00184 * 1 2 3 27 27 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46928 * 239.99424 * 2 1 3 29 29 H 1.09004 * 109.47231 * 305.11573 * 3 2 1 30 30 H 1.09000 * 109.47589 * 65.11549 * 3 2 1 31 31 H 1.09004 * 109.47420 * 185.11891 * 3 2 1 32 32 H 1.09000 * 109.46832 * 54.29442 * 4 2 1 33 33 H 1.08997 * 109.46893 * 294.30069 * 4 2 1 34 34 H 1.08996 * 109.47300 * 154.92281 * 6 5 4 35 35 H 1.09007 * 109.46746 * 34.92441 * 6 5 4 36 36 H 0.97004 * 119.99564 * 359.97438 * 10 9 7 37 37 H 1.08993 * 117.52360 * 0.02562 * 19 17 15 38 38 H 1.09007 * 117.51641 * 145.15600 * 19 17 15 39 39 H 1.08999 * 110.57572 * 262.06302 * 21 20 19 40 40 H 1.08997 * 110.58179 * 24.81118 * 21 20 19 41 41 H 1.09006 * 110.36356 * 142.67731 * 22 21 20 42 42 H 1.09001 * 110.36083 * 264.87468 * 22 21 20 43 43 H 1.08995 * 110.41793 * 280.88719 * 24 23 22 44 44 H 1.09001 * 110.41895 * 158.42150 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4986 -0.8412 1.1827 6 6 4.1096 -1.9387 0.4286 7 6 4.1949 -3.1627 1.3034 8 1 3.9054 -3.1054 2.3423 9 6 4.6428 -4.3560 0.7775 10 7 4.9951 -4.4261 -0.4876 11 14 4.7480 -5.8736 1.8617 12 1 6.0889 -5.9362 2.4968 13 1 4.5347 -7.0885 1.0348 14 1 3.7041 -5.8025 2.9154 15 6 4.2782 0.0579 1.8150 16 8 5.4858 -0.0417 1.7603 17 6 3.6497 1.1871 2.5902 18 1 2.7093 0.9500 3.0877 19 6 3.8223 2.6060 2.0393 20 6 4.5826 2.1695 3.2821 21 6 6.1079 1.9792 3.2718 22 6 6.5481 2.4742 4.6698 23 8 5.3739 2.3333 5.4999 24 6 4.2633 2.7465 4.6703 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6038 1.9821 -0.8406 30 1 1.7535 1.9292 0.9322 31 1 3.1262 1.4439 -0.0917 32 1 1.5956 -1.7151 1.3018 33 1 1.7624 -0.1518 2.1363 34 1 5.1111 -1.6482 0.1114 35 1 3.5007 -2.1603 -0.4480 36 1 4.9394 -3.6384 -1.0509 37 1 4.3899 2.7223 1.1161 38 1 2.9947 3.3026 2.1739 39 1 6.3618 0.9274 3.1403 40 1 6.5641 2.5834 2.4877 41 1 7.3598 1.8556 5.0529 42 1 6.8579 3.5182 4.6222 43 1 4.2057 3.8340 4.6261 44 1 3.3300 2.3303 5.0495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763994993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:40 Heat of formation + Delta-G solvation = -63.970079 kcal Electronic energy + Delta-G solvation = -23526.098721 eV Core-core repulsion = 20251.083472 eV Total energy + Delta-G solvation = -3275.015249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43281 -38.69364 -36.45561 -35.67301 -33.80411 -32.39565 -30.19784 -27.99855 -27.20635 -26.80978 -25.59396 -23.98676 -22.67717 -22.15007 -20.22143 -19.78985 -18.23582 -16.98352 -16.74563 -15.98753 -15.80628 -15.39853 -15.11432 -14.47427 -14.37383 -13.97059 -13.72065 -13.45926 -13.11483 -12.99377 -12.57463 -12.45834 -12.24593 -12.16072 -11.76194 -11.70650 -11.40223 -11.31443 -11.17809 -10.92781 -10.80052 -10.69916 -10.58728 -10.44816 -10.21849 -10.12611 -9.80187 -9.68364 -9.11325 -8.73957 -8.39313 -7.62594 -6.39696 -4.11799 3.03887 3.43406 3.46505 3.61192 3.68051 3.83968 4.09646 4.48402 4.54471 4.68367 4.84390 4.97704 5.01562 5.11508 5.17819 5.23977 5.33647 5.36821 5.47063 5.50609 5.57829 5.59874 5.66424 5.70365 5.74534 5.82227 5.87914 5.90018 5.98355 6.04804 6.11306 6.16653 6.24290 6.43583 6.50281 6.63479 6.81466 6.83935 7.13269 7.40538 8.03122 8.29992 8.42936 8.76940 9.00722 9.57902 10.97425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.006142 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.580304 B = 4557.661090 C = 5989.927146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.117 3.883 5 N -0.584 5.584 6 C 0.236 3.764 7 C -0.606 4.606 8 H 0.051 0.949 9 C 0.020 3.980 10 N -0.910 5.910 11 Si 1.073 2.927 12 H -0.287 1.287 13 H -0.283 1.283 14 H -0.289 1.289 15 C 0.537 3.463 16 O -0.540 6.540 17 C -0.165 4.165 18 H 0.120 0.880 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.129 4.129 22 C 0.046 3.954 23 O -0.375 6.375 24 C 0.084 3.916 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 15.727 4.826 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.202 4.202 4 C -0.007 4.007 5 N -0.314 5.314 6 C 0.116 3.884 7 C -0.645 4.645 8 H 0.070 0.930 9 C -0.184 4.184 10 N -0.546 5.546 11 Si 0.901 3.099 12 H -0.213 1.213 13 H -0.209 1.209 14 H -0.215 1.215 15 C 0.324 3.676 16 O -0.419 6.419 17 C -0.186 4.186 18 H 0.138 0.862 19 C -0.170 4.170 20 C -0.136 4.136 21 C -0.166 4.166 22 C -0.031 4.031 23 O -0.294 6.294 24 C 0.007 3.993 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.996 13.952 5.004 15.989 hybrid contribution -0.622 1.622 -0.270 1.758 sum -6.618 15.574 4.734 17.571 Atomic orbital electron populations 1.21754 0.95009 1.01833 1.01363 1.21537 0.95444 0.96727 0.99821 1.21993 1.01308 0.95765 1.01153 1.21561 0.81401 1.01071 0.96712 1.47949 1.05485 1.27423 1.50504 1.19322 0.93743 0.84026 0.91293 1.22276 1.48660 0.95538 0.98019 0.93018 1.25799 0.93364 1.01350 0.97900 1.70779 1.44782 1.33186 1.05861 0.83487 0.76579 0.75199 0.74632 1.21345 1.20910 1.21519 1.19350 0.86710 0.82054 0.79439 1.90547 1.14175 1.75325 1.61859 1.22333 1.01169 0.91206 1.03918 0.86217 1.22916 1.02122 0.94782 0.97213 1.22181 0.95142 1.02033 0.94225 1.22719 0.91525 1.06178 0.96179 1.23505 0.89036 0.99947 0.90620 1.89144 1.16138 1.87813 1.36293 1.22765 0.90972 0.98138 0.87445 0.92858 0.92835 0.92490 0.90837 0.93318 0.92528 0.92622 0.90255 0.91327 0.94816 0.96073 0.92231 0.88052 0.87871 0.86382 0.90828 0.89180 0.92815 0.91719 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.12 -1.61 3.11 -90.62 -0.28 -1.89 16 3 C -0.14 -1.79 7.13 37.15 0.26 -1.52 16 4 C 0.12 1.92 4.91 -4.04 -0.02 1.90 16 5 N -0.58 -12.23 2.26 -175.07 -0.40 -12.63 16 6 C 0.24 6.10 4.59 -5.20 -0.02 6.07 16 7 C -0.61 -17.35 9.38 -34.44 -0.32 -17.67 16 8 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 10 N -0.91 -27.69 13.65 55.43 0.76 -26.94 16 11 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 15 C 0.54 10.95 6.39 -10.99 -0.07 10.88 16 16 O -0.54 -13.01 12.85 5.55 0.07 -12.94 16 17 C -0.17 -2.47 3.90 -92.13 -0.36 -2.83 16 18 H 0.12 1.59 6.39 -51.93 -0.33 1.26 16 19 C -0.13 -1.58 7.15 -27.09 -0.19 -1.77 16 20 C -0.13 -1.86 2.50 -154.69 -0.39 -2.25 16 21 C -0.13 -1.95 5.95 -25.47 -0.15 -2.11 16 22 C 0.05 0.60 7.65 38.05 0.29 0.89 16 23 O -0.38 -5.57 11.65 -35.23 -0.41 -5.98 16 24 C 0.08 1.02 7.44 37.51 0.28 1.29 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 6.32 -51.93 -0.33 0.28 16 31 H 0.05 0.80 5.80 -51.93 -0.30 0.50 16 32 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 33 H 0.07 0.96 5.74 -51.93 -0.30 0.66 16 34 H 0.03 0.97 7.27 -51.93 -0.38 0.60 16 35 H 0.02 0.55 7.56 -51.93 -0.39 0.16 16 36 H 0.27 8.08 7.19 -40.82 -0.29 7.79 16 37 H 0.10 1.29 7.70 -51.93 -0.40 0.89 16 38 H 0.10 0.92 7.97 -51.93 -0.41 0.51 16 39 H 0.12 2.26 5.48 -51.93 -0.28 1.98 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -33.06 340.94 -7.92 -40.98 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.26 Total: 1.42 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.73 Total: -9.75 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.36 Total: -39.56 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.34 Total: -18.92 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.06 -7.92 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763994993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.988 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds