Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46536 * 2 1 4 4 C 1.52990 * 109.47060 * 119.99742 * 2 1 3 5 5 N 1.46502 * 109.47203 * 175.49566 * 4 2 1 6 6 C 1.46503 * 119.99707 * 275.56805 * 5 4 2 7 7 C 1.50700 * 109.47061 * 265.88456 * 6 5 4 8 8 H 1.07993 * 119.99784 * 358.72953 * 7 6 5 9 9 C 1.37879 * 119.99728 * 178.73023 * 7 6 5 10 10 N 1.31512 * 120.00437 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99791 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47199 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.46861 * 60.00132 * 11 9 7 14 14 H 1.48496 * 109.47115 * 299.99992 * 11 9 7 15 15 C 1.34773 * 120.00293 * 95.56448 * 5 4 2 16 16 O 1.21283 * 120.00342 * 180.02562 * 15 5 4 17 17 C 1.50695 * 120.00069 * 0.02562 * 15 5 4 18 18 H 1.09010 * 115.56398 * 11.24022 * 17 15 5 19 19 C 1.53181 * 117.52534 * 157.01837 * 17 15 5 20 20 C 1.52102 * 59.76865 * 107.42442 * 19 17 15 21 21 C 1.53711 * 121.73667 * 111.10038 * 20 19 17 22 22 C 1.54700 * 103.69317 * 143.46964 * 21 20 19 23 23 O 1.44491 * 104.87172 * 23.84531 * 22 21 20 24 24 C 1.44641 * 105.46340 * 320.02215 * 23 22 21 25 25 H 1.08997 * 109.47318 * 299.99924 * 1 2 3 26 26 H 1.09001 * 109.47336 * 60.00091 * 1 2 3 27 27 H 1.08999 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46969 * 240.00350 * 2 1 3 29 29 H 1.08998 * 109.47424 * 305.76802 * 3 2 1 30 30 H 1.08997 * 109.47258 * 65.77183 * 3 2 1 31 31 H 1.09003 * 109.46753 * 185.77135 * 3 2 1 32 32 H 1.09004 * 109.47186 * 55.49670 * 4 2 1 33 33 H 1.08995 * 109.47451 * 295.49143 * 4 2 1 34 34 H 1.09001 * 109.47138 * 145.88560 * 6 5 4 35 35 H 1.08997 * 109.47722 * 25.88957 * 6 5 4 36 36 H 0.96999 * 119.99435 * 0.02562 * 10 9 7 37 37 H 1.08998 * 117.52554 * 214.84903 * 19 17 15 38 38 H 1.09003 * 117.52102 * 359.94979 * 19 17 15 39 39 H 1.09002 * 110.58063 * 262.01942 * 21 20 19 40 40 H 1.09002 * 110.58428 * 24.76758 * 21 20 19 41 41 H 1.09004 * 110.35861 * 142.69396 * 22 21 20 42 42 H 1.09006 * 110.36285 * 264.88628 * 22 21 20 43 43 H 1.08995 * 110.41849 * 280.87989 * 24 23 22 44 44 H 1.08999 * 110.41861 * 158.41893 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5010 -0.8158 1.1962 6 6 4.1378 -1.9112 0.4608 7 6 4.4391 -3.0439 1.4081 8 1 4.2007 -2.9484 2.4570 9 6 5.0192 -4.2020 0.9355 10 7 5.3090 -4.3184 -0.3420 11 14 5.3920 -5.6063 2.1096 12 1 6.0090 -6.7289 1.3585 13 1 4.1315 -6.0692 2.7437 14 1 6.3313 -5.1373 3.1598 15 6 4.2591 0.1048 1.8240 16 8 5.4687 0.0267 1.7797 17 6 3.6041 1.2312 2.5809 18 1 2.5299 1.1310 2.7369 19 6 4.4195 1.9100 3.6858 20 6 4.1575 2.6328 2.3734 21 6 3.2373 3.8617 2.2969 22 6 3.9213 4.7665 1.2449 23 8 4.7109 3.8650 0.4377 24 6 5.2840 2.9165 1.3672 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.5946 1.9853 -0.8338 30 1 1.7633 1.9257 0.9371 31 1 3.1250 1.4444 -0.1033 32 1 1.6122 -1.7229 1.2905 33 1 1.7441 -0.1628 2.1373 34 1 5.0655 -1.5564 0.0119 35 1 3.4660 -2.2618 -0.3227 36 1 5.1151 -3.5894 -0.9517 37 1 3.8816 2.2569 4.5680 38 1 5.4294 1.5410 3.8655 39 1 2.2401 3.5736 1.9641 40 1 3.1874 4.3638 3.2631 41 1 3.1726 5.2678 0.6315 42 1 4.5622 5.4998 1.7346 43 1 6.1450 3.3528 1.8733 44 1 5.5700 2.0013 0.8487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763994995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -65.653340 kcal Electronic energy + Delta-G solvation = -23827.429338 eV Core-core repulsion = 20552.341097 eV Total energy + Delta-G solvation = -3275.088241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48481 -38.65476 -36.51374 -35.59427 -33.78836 -32.35153 -30.41200 -27.80771 -27.13185 -26.87859 -25.69107 -23.92878 -22.86358 -22.04048 -20.22374 -19.78459 -18.10427 -17.08066 -16.69589 -16.18360 -15.84319 -15.39686 -15.06695 -14.52651 -14.36084 -13.77835 -13.70591 -13.43542 -13.19965 -13.04279 -12.69687 -12.43480 -12.18006 -12.07453 -11.72931 -11.67521 -11.53882 -11.36512 -11.10910 -10.96326 -10.82025 -10.72594 -10.54887 -10.49375 -10.15470 -10.08867 -9.94273 -9.64011 -9.10255 -8.94051 -8.36831 -7.59748 -6.36489 -4.08082 2.98446 3.43627 3.48025 3.64956 3.71776 3.84339 4.19597 4.37744 4.55283 4.65189 4.83770 4.89112 4.97911 5.04172 5.12338 5.16275 5.33416 5.38432 5.41957 5.43683 5.59776 5.63354 5.69006 5.70795 5.73554 5.77711 5.81059 5.89903 5.98160 6.03567 6.10588 6.19433 6.20741 6.26091 6.53060 6.54165 6.79465 6.82541 7.14757 7.41945 8.05620 8.31685 8.45110 8.79503 9.02669 9.61248 11.00731 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.005553 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.211718 B = 5040.760652 C = 5766.212872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.115 3.885 5 N -0.586 5.586 6 C 0.239 3.761 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.020 3.980 10 N -0.910 5.910 11 Si 1.071 2.929 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.538 3.462 16 O -0.541 6.541 17 C -0.169 4.169 18 H 0.121 0.879 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.121 4.121 22 C 0.047 3.953 23 O -0.372 6.372 24 C 0.076 3.924 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.022 0.978 36 H 0.267 0.733 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 16.268 5.200 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.198 4.198 4 C -0.009 4.009 5 N -0.315 5.315 6 C 0.120 3.880 7 C -0.642 4.642 8 H 0.069 0.931 9 C -0.184 4.184 10 N -0.546 5.546 11 Si 0.899 3.101 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.214 1.214 15 C 0.325 3.675 16 O -0.419 6.419 17 C -0.190 4.190 18 H 0.138 0.862 19 C -0.171 4.171 20 C -0.133 4.133 21 C -0.158 4.158 22 C -0.030 4.030 23 O -0.290 6.290 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.056 14.661 4.992 17.457 hybrid contribution -0.920 1.452 0.241 1.735 sum -8.976 16.112 5.233 19.172 Atomic orbital electron populations 1.21755 0.95048 1.01739 1.01388 1.21577 0.95385 0.97015 0.99738 1.21891 1.01790 0.95243 1.00868 1.21599 0.81434 1.01047 0.96799 1.47898 1.05381 1.26810 1.51412 1.19295 0.92978 0.83928 0.91848 1.22231 1.44952 1.01190 0.95823 0.93141 1.25790 0.93693 1.00171 0.98788 1.70805 1.45147 1.35435 1.03219 0.83515 0.76438 0.75507 0.74636 1.20680 1.21503 1.21431 1.19243 0.86855 0.81916 0.79487 1.90645 1.13949 1.75570 1.61744 1.22521 1.00176 0.92767 1.03561 0.86177 1.22916 1.02145 1.00981 0.91038 1.22033 0.99433 0.91790 1.00013 1.22469 0.99039 0.94214 1.00071 1.23375 0.94241 0.92661 0.92758 1.89197 1.66218 1.43170 1.30450 1.22957 0.93346 0.93765 0.89960 0.92929 0.92775 0.92549 0.90807 0.93288 0.93001 0.92264 0.90365 0.91294 0.95253 0.95977 0.92278 0.87985 0.87270 0.90185 0.90170 0.89327 0.92434 0.91708 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 2 C -0.12 -1.69 3.13 -90.62 -0.28 -1.97 16 3 C -0.14 -1.93 7.74 37.16 0.29 -1.65 16 4 C 0.12 1.91 4.87 -4.05 -0.02 1.89 16 5 N -0.59 -12.47 2.26 -175.07 -0.40 -12.87 16 6 C 0.24 6.26 4.46 -5.19 -0.02 6.24 16 7 C -0.60 -17.44 9.36 -34.44 -0.32 -17.76 16 8 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 10 N -0.91 -27.97 13.65 55.43 0.76 -27.22 16 11 Si 1.07 25.88 29.90 -169.99 -5.08 20.79 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.54 11.20 5.69 -10.99 -0.06 11.13 16 16 O -0.54 -13.40 14.26 5.55 0.08 -13.33 16 17 C -0.17 -2.58 3.52 -92.13 -0.32 -2.90 16 18 H 0.12 1.59 5.13 -51.92 -0.27 1.33 16 19 C -0.13 -1.76 9.82 -27.10 -0.27 -2.03 16 20 C -0.13 -1.75 2.44 -154.69 -0.38 -2.12 16 21 C -0.12 -1.21 6.82 -25.47 -0.17 -1.38 16 22 C 0.05 0.49 7.65 38.05 0.29 0.78 16 23 O -0.37 -5.53 11.65 -35.23 -0.41 -5.94 16 24 C 0.08 1.16 7.07 37.51 0.27 1.43 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 5.16 -51.93 -0.27 0.36 16 31 H 0.06 0.99 6.88 -51.93 -0.36 0.63 16 32 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.07 0.98 5.60 -51.93 -0.29 0.68 16 34 H 0.03 0.86 7.46 -51.93 -0.39 0.47 16 35 H 0.02 0.58 7.86 -51.93 -0.41 0.17 16 36 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.11 1.63 7.86 -51.93 -0.41 1.23 16 39 H 0.08 0.76 6.66 -51.93 -0.35 0.41 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.11 2.05 5.84 -51.93 -0.30 1.75 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -33.46 343.29 -7.83 -41.29 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.18 Total: 1.21 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.76 Total: -9.12 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.36 Total: -40.08 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.33 Total: -19.26 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.46 -7.83 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763994995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.363 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds