Wall clock time and date at job start Tue Mar 31 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.50698 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.34509 * 125.79364 * 89.99981 * 4 3 2 6 6 C 1.41384 * 106.84382 * 180.02562 * 5 4 3 7 7 C 1.34514 * 106.83828 * 0.22642 * 6 5 4 8 8 C 1.50697 * 125.78862 * 179.76975 * 7 6 5 9 9 N 1.46907 * 109.47106 * 84.80845 * 8 7 6 10 10 C 1.46900 * 111.00310 * 75.67602 * 9 8 7 11 11 C 1.50700 * 109.46864 * 190.00292 * 10 9 8 12 12 H 1.07998 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99570 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99934 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00049 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47092 * 89.99948 * 15 13 11 17 17 H 1.48495 * 109.47439 * 210.00116 * 15 13 11 18 18 H 1.48505 * 109.47343 * 330.00388 * 15 13 11 19 19 C 1.46896 * 111.00078 * 199.63434 * 9 8 7 20 20 C 1.53006 * 109.47348 * 75.80219 * 19 9 8 21 21 C 1.53007 * 109.46856 * 64.61173 * 20 19 9 22 22 C 1.53000 * 109.47321 * 184.61240 * 20 19 9 23 23 O 1.34304 * 125.78497 * 270.01598 * 4 3 2 24 24 H 1.08991 * 109.46981 * 60.00389 * 1 2 3 25 25 H 1.09003 * 109.46507 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47260 * 299.99963 * 1 2 3 27 27 H 1.09003 * 109.46927 * 59.99760 * 3 2 1 28 28 H 1.09003 * 109.46760 * 300.00207 * 3 2 1 29 29 H 1.07996 * 126.57779 * 359.97438 * 5 4 3 30 30 H 1.07997 * 126.58179 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47203 * 204.80438 * 8 7 6 32 32 H 1.08995 * 109.47552 * 324.80556 * 8 7 6 33 33 H 1.08999 * 109.47070 * 310.00458 * 10 9 8 34 34 H 1.09003 * 109.46724 * 70.00111 * 10 9 8 35 35 H 0.97003 * 120.00106 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47184 * 195.80305 * 19 9 8 37 37 H 1.09003 * 109.47050 * 315.80328 * 19 9 8 38 38 H 1.09001 * 109.47125 * 304.61378 * 20 19 9 39 39 H 1.08998 * 109.47268 * 300.00239 * 21 20 19 40 40 H 1.09001 * 109.47086 * 60.00182 * 21 20 19 41 41 H 1.09003 * 109.46936 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46707 * 60.00209 * 22 20 19 43 43 H 1.08994 * 109.47198 * 180.02562 * 22 20 19 44 44 H 1.09001 * 109.47134 * 300.00133 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2963 1.1246 -1.0920 6 6 5.6295 1.0184 -0.6334 7 6 5.5802 1.0166 0.7108 8 6 6.7654 0.9151 1.6360 9 7 7.3404 2.2509 1.8436 10 6 6.5102 3.0450 2.7591 11 6 6.9869 4.4746 2.7574 12 1 7.8233 4.7642 2.1385 13 6 6.3560 5.4126 3.5468 14 7 6.7716 6.6603 3.5450 15 14 4.9099 4.9115 4.6178 16 1 5.4055 4.4863 5.9515 17 1 3.9885 6.0651 4.7770 18 1 4.1859 3.7846 3.9765 19 6 8.7226 2.1590 2.3321 20 6 9.6484 1.7781 1.1749 21 6 9.6518 2.8998 0.1343 22 6 11.0684 1.5699 1.7050 23 8 4.2958 1.1240 1.0885 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9698 1.1502 -2.1211 30 1 6.5167 0.9476 -1.2450 31 1 6.4447 0.5048 2.5935 32 1 7.5166 0.2609 1.1937 33 1 5.4711 3.0081 2.4319 34 1 6.5884 2.6370 3.7669 35 1 6.3280 7.3202 4.1007 36 1 9.0286 3.1222 2.7403 37 1 8.7829 1.3987 3.1109 38 1 9.2937 0.8561 0.7142 39 1 8.6401 3.0482 -0.2434 40 1 10.0064 3.8218 0.5950 41 1 10.3116 2.6287 -0.6899 42 1 11.0659 0.7709 2.4464 43 1 11.7279 1.2991 0.8806 44 1 11.4231 2.4919 2.1657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768154437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:16 Heat of formation + Delta-G solvation = -32.408157 kcal Electronic energy + Delta-G solvation = -22679.160077 eV Core-core repulsion = 19405.513455 eV Total energy + Delta-G solvation = -3273.646622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22925 -37.95980 -37.60572 -34.21311 -32.77177 -32.47742 -31.09148 -28.61186 -27.38335 -26.64763 -26.19435 -24.51070 -23.21187 -21.53210 -20.57935 -19.91381 -19.21324 -16.98861 -16.83185 -16.55044 -15.85595 -15.58225 -15.24887 -14.89609 -14.35220 -14.20411 -13.67019 -13.61317 -13.33471 -12.85799 -12.53167 -12.43742 -12.38843 -12.27159 -11.95820 -11.81810 -11.64399 -11.51340 -11.44296 -11.17956 -10.74899 -10.63644 -10.46508 -10.21533 -9.89902 -9.89018 -9.78133 -9.51776 -9.23448 -8.56676 -8.05962 -7.45441 -6.04456 -4.01039 1.92077 2.85311 3.14990 3.28413 3.36175 3.41567 3.97051 4.43454 4.73386 4.85879 5.04738 5.11980 5.17480 5.22414 5.26806 5.29814 5.33422 5.38841 5.42909 5.45776 5.61755 5.72434 5.74032 5.95606 6.07588 6.11324 6.13728 6.29178 6.32973 6.40416 6.41079 6.46804 6.58318 6.81041 6.85613 6.90325 6.92120 6.96483 7.03695 7.53755 7.61558 7.86073 7.99957 8.64527 9.04584 9.57857 11.08428 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006026 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.376743 B = 4645.172610 C = 6491.992848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.146 3.854 4 C -0.033 4.033 5 C -0.180 4.180 6 C -0.203 4.203 7 C 0.031 3.969 8 C 0.125 3.875 9 N -0.518 5.518 10 C 0.160 3.840 11 C -0.505 4.505 12 H 0.083 0.917 13 C 0.070 3.930 14 N -0.900 5.900 15 Si 0.869 3.131 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.064 3.936 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.146 4.146 23 O -0.168 6.168 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.031 0.969 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -13.154 -7.457 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.070 3.930 4 C -0.083 4.083 5 C -0.199 4.199 6 C -0.223 4.223 7 C -0.021 4.021 8 C -0.003 4.003 9 N -0.243 5.243 10 C 0.034 3.966 11 C -0.544 4.544 12 H 0.101 0.899 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.696 3.304 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.063 4.063 20 C -0.109 4.109 21 C -0.191 4.191 22 C -0.203 4.203 23 O -0.064 6.064 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.002 0.998 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.503 -12.876 -7.512 15.572 hybrid contribution -1.052 -0.220 1.225 1.630 sum -5.555 -13.096 -6.287 15.553 Atomic orbital electron populations 1.22762 0.80671 1.02908 1.00196 1.87979 1.19791 1.27427 1.95489 1.20620 0.85072 0.85196 1.02144 1.21641 0.92185 1.09726 0.84757 1.21509 0.93018 1.06582 0.98829 1.21410 0.97612 1.09471 0.93830 1.22451 0.82553 1.02323 0.94733 1.20575 0.90281 0.93584 0.95889 1.61901 1.02137 1.10166 1.50050 1.20253 0.93513 0.94148 0.88650 1.21005 1.17344 0.90456 1.25556 0.89863 1.24856 0.96801 0.94839 0.96616 1.69885 1.41591 1.01929 1.40467 0.86954 0.83581 0.78534 0.81343 1.20348 1.21167 1.19023 1.22157 0.87772 1.02082 0.94327 1.21117 0.94293 0.98740 0.96772 1.21674 1.02310 0.97894 0.97271 1.21818 0.96623 1.01482 1.00422 1.83979 1.17064 1.70553 1.34800 0.93852 0.89469 0.93826 0.91488 0.90112 0.83798 0.83532 0.93909 0.88526 0.95138 0.99824 0.92723 0.88590 0.96036 0.92267 0.91163 0.92861 0.94548 0.93332 0.93146 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -5.24 10.69 -35.23 -0.38 -5.62 16 3 C 0.15 1.96 6.47 36.00 0.23 2.19 16 4 C -0.03 -0.56 6.95 -35.63 -0.25 -0.81 16 5 C -0.18 -2.84 10.81 -39.70 -0.43 -3.27 16 6 C -0.20 -3.38 10.81 -39.70 -0.43 -3.81 16 7 C 0.03 0.57 6.16 -35.63 -0.22 0.35 16 8 C 0.12 2.19 5.34 -4.97 -0.03 2.16 16 9 N -0.52 -10.58 3.78 -237.51 -0.90 -11.47 16 10 C 0.16 3.94 3.61 -4.98 -0.02 3.92 16 11 C -0.51 -14.25 8.79 -34.44 -0.30 -14.56 16 12 H 0.08 2.53 7.56 -52.49 -0.40 2.13 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 15 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 19 C 0.06 1.17 4.18 -3.82 -0.02 1.16 16 20 C -0.09 -1.36 2.96 -90.61 -0.27 -1.63 16 21 C -0.13 -2.15 9.08 37.16 0.34 -1.82 16 22 C -0.15 -1.88 9.19 37.16 0.34 -1.54 16 23 O -0.17 -3.31 10.30 5.69 0.06 -3.25 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 32 H 0.10 1.41 6.45 -51.93 -0.34 1.08 16 33 H 0.03 0.80 6.19 -51.93 -0.32 0.48 16 34 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 36 H 0.10 2.03 6.58 -51.93 -0.34 1.69 16 37 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.06 0.83 6.67 -51.93 -0.35 0.48 16 39 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -32.10 358.35 -7.35 -39.44 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.61 Total: -0.67 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.03 Total: -14.31 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.12 Total: -38.22 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.32 Total: -8.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.10 -7.35 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768154437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.036 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds