Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.50698 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.34509 * 125.79364 * 89.99981 * 4 3 2 6 6 C 1.41384 * 106.84382 * 180.02562 * 5 4 3 7 7 C 1.34514 * 106.83828 * 0.22642 * 6 5 4 8 8 C 1.50697 * 125.78862 * 179.76975 * 7 6 5 9 9 N 1.46907 * 109.47106 * 84.80845 * 8 7 6 10 10 C 1.46900 * 111.00310 * 75.67602 * 9 8 7 11 11 C 1.50700 * 109.46864 * 190.00292 * 10 9 8 12 12 H 1.07998 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99570 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99934 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00049 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47092 * 89.99948 * 15 13 11 17 17 H 1.48495 * 109.47439 * 210.00116 * 15 13 11 18 18 H 1.48505 * 109.47343 * 330.00388 * 15 13 11 19 19 C 1.46896 * 111.00078 * 199.63434 * 9 8 7 20 20 C 1.53006 * 109.47348 * 75.80219 * 19 9 8 21 21 C 1.53007 * 109.46856 * 64.61173 * 20 19 9 22 22 C 1.53000 * 109.47321 * 184.61240 * 20 19 9 23 23 O 1.34304 * 125.78497 * 270.01598 * 4 3 2 24 24 H 1.08991 * 109.46981 * 60.00389 * 1 2 3 25 25 H 1.09003 * 109.46507 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47260 * 299.99963 * 1 2 3 27 27 H 1.09003 * 109.46927 * 59.99760 * 3 2 1 28 28 H 1.09003 * 109.46760 * 300.00207 * 3 2 1 29 29 H 1.07996 * 126.57779 * 359.97438 * 5 4 3 30 30 H 1.07997 * 126.58179 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47203 * 204.80438 * 8 7 6 32 32 H 1.08995 * 109.47552 * 324.80556 * 8 7 6 33 33 H 1.08999 * 109.47070 * 310.00458 * 10 9 8 34 34 H 1.09003 * 109.46724 * 70.00111 * 10 9 8 35 35 H 0.97003 * 120.00106 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47184 * 195.80305 * 19 9 8 37 37 H 1.09003 * 109.47050 * 315.80328 * 19 9 8 38 38 H 1.09001 * 109.47125 * 304.61378 * 20 19 9 39 39 H 1.08998 * 109.47268 * 300.00239 * 21 20 19 40 40 H 1.09001 * 109.47086 * 60.00182 * 21 20 19 41 41 H 1.09003 * 109.46936 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46707 * 60.00209 * 22 20 19 43 43 H 1.08994 * 109.47198 * 180.02562 * 22 20 19 44 44 H 1.09001 * 109.47134 * 300.00133 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2963 1.1246 -1.0920 6 6 5.6295 1.0184 -0.6334 7 6 5.5802 1.0166 0.7108 8 6 6.7654 0.9151 1.6360 9 7 7.3404 2.2509 1.8436 10 6 6.5102 3.0450 2.7591 11 6 6.9869 4.4746 2.7574 12 1 7.8233 4.7642 2.1385 13 6 6.3560 5.4126 3.5468 14 7 6.7716 6.6603 3.5450 15 14 4.9099 4.9115 4.6178 16 1 5.4055 4.4863 5.9515 17 1 3.9885 6.0651 4.7770 18 1 4.1859 3.7846 3.9765 19 6 8.7226 2.1590 2.3321 20 6 9.6484 1.7781 1.1749 21 6 9.6518 2.8998 0.1343 22 6 11.0684 1.5699 1.7050 23 8 4.2958 1.1240 1.0885 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9698 1.1502 -2.1211 30 1 6.5167 0.9476 -1.2450 31 1 6.4447 0.5048 2.5935 32 1 7.5166 0.2609 1.1937 33 1 5.4711 3.0081 2.4319 34 1 6.5884 2.6370 3.7669 35 1 6.3280 7.3202 4.1007 36 1 9.0286 3.1222 2.7403 37 1 8.7829 1.3987 3.1109 38 1 9.2937 0.8561 0.7142 39 1 8.6401 3.0482 -0.2434 40 1 10.0064 3.8218 0.5950 41 1 10.3116 2.6287 -0.6899 42 1 11.0659 0.7709 2.4464 43 1 11.7279 1.2991 0.8806 44 1 11.4231 2.4919 2.1657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768154437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -53.096269 kcal Electronic energy + Delta-G solvation = -22680.057181 eV Core-core repulsion = 19405.513455 eV Total energy + Delta-G solvation = -3274.543726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.52613 -39.21653 -38.80051 -35.65040 -34.62686 -33.97715 -32.43175 -30.22219 -28.80961 -27.84199 -27.14031 -25.92404 -24.75043 -22.90652 -22.22641 -21.20537 -20.58833 -19.00798 -18.04650 -17.71045 -16.96828 -16.75208 -16.63610 -16.48430 -15.75992 -15.72846 -15.29189 -14.83473 -14.64792 -14.42726 -13.99737 -13.88483 -13.69306 -13.51574 -13.30282 -13.12651 -12.89796 -12.79372 -12.70072 -12.61000 -12.40372 -12.25215 -11.89803 -11.73072 -11.62098 -11.41635 -11.19135 -10.82123 -10.78401 -10.75967 -9.36536 -9.06514 -8.30264 -6.31401 0.65046 1.27123 1.29692 1.40940 1.62093 1.94744 2.30210 2.99988 3.02902 3.26790 3.71390 3.91523 4.01475 4.10919 4.14324 4.20641 4.25152 4.38191 4.38920 4.45936 4.51772 4.55090 4.71716 4.75079 4.83373 4.85064 4.87703 4.94191 5.00249 5.08261 5.10200 5.15708 5.18125 5.21795 5.35543 5.52570 5.57888 5.65498 5.67696 5.95700 6.06724 6.25812 6.35462 6.58102 6.74746 7.31304 8.85989 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006026 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.376743 B = 4645.172610 C = 6491.992848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.146 3.854 4 C -0.051 4.051 5 C -0.183 4.183 6 C -0.199 4.199 7 C -0.003 4.003 8 C 0.128 3.872 9 N -0.528 5.528 10 C 0.175 3.825 11 C -0.506 4.506 12 H 0.047 0.953 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.934 3.066 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.261 1.261 19 C 0.065 3.935 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.141 4.141 23 O -0.199 6.199 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.174 0.826 30 H 0.167 0.833 31 H 0.041 0.959 32 H 0.130 0.870 33 H 0.016 0.984 34 H -0.018 1.018 35 H 0.266 0.734 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -15.297 -8.357 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.070 3.930 4 C -0.100 4.100 5 C -0.202 4.202 6 C -0.219 4.219 7 C -0.054 4.054 8 C 0.001 3.999 9 N -0.252 5.252 10 C 0.048 3.952 11 C -0.544 4.544 12 H 0.065 0.935 13 C -0.183 4.183 14 N -0.584 5.584 15 Si 0.758 3.242 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.062 4.062 20 C -0.101 4.101 21 C -0.187 4.187 22 C -0.199 4.199 23 O -0.096 6.096 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.192 0.808 30 H 0.184 0.816 31 H 0.060 0.940 32 H 0.148 0.852 33 H 0.034 0.966 34 H 0.000 1.000 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.196 -15.038 -8.419 18.001 hybrid contribution -0.823 0.439 1.411 1.691 sum -6.019 -14.600 -7.009 17.277 Atomic orbital electron populations 1.23012 0.78440 1.04303 1.01405 1.87929 1.22220 1.27384 1.95723 1.20765 0.83220 0.85605 1.03389 1.22465 0.93802 1.09225 0.84543 1.21913 0.92479 1.05782 1.00044 1.21770 0.98834 1.07880 0.93423 1.22706 0.82537 1.04445 0.95690 1.20675 0.90988 0.92037 0.96200 1.61801 1.02559 1.11990 1.48825 1.19907 0.93237 0.92706 0.89385 1.21192 1.16084 0.92653 1.24470 0.93513 1.25678 0.99701 0.94740 0.98173 1.70022 1.43339 1.03176 1.41861 0.85914 0.80136 0.78385 0.79754 1.19091 1.20363 1.18588 1.22162 0.87300 1.00504 0.96231 1.21085 0.94957 0.98918 0.95124 1.21613 1.01281 0.97430 0.98347 1.21780 0.95185 1.01422 1.01482 1.83948 1.17889 1.71344 1.36450 0.91916 0.88059 0.93318 0.91827 0.87204 0.80836 0.81553 0.94045 0.85213 0.96613 1.00003 0.92474 0.92508 0.94557 0.90032 0.93597 0.95368 0.91673 0.91920 0.90943 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.51 10.69 -148.98 -1.59 -12.10 16 3 C 0.15 3.72 6.47 71.24 0.46 4.18 16 4 C -0.05 -1.67 6.95 24.83 0.17 -1.50 16 5 C -0.18 -5.44 10.81 22.19 0.24 -5.20 16 6 C -0.20 -6.32 10.81 22.19 0.24 -6.08 16 7 C 0.00 -0.12 6.16 24.83 0.15 0.03 16 8 C 0.13 4.35 5.34 85.55 0.46 4.81 16 9 N -0.53 -21.61 3.78 -905.36 -3.42 -25.04 16 10 C 0.17 8.74 3.61 85.56 0.31 9.05 16 11 C -0.51 -29.64 8.79 25.60 0.22 -29.41 16 12 H 0.05 3.01 7.56 -2.91 -0.02 2.99 16 13 C 0.01 0.87 5.47 84.66 0.46 1.34 16 14 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 15 Si 0.93 45.83 27.47 68.60 1.88 47.72 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 18 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 19 C 0.07 2.39 4.18 86.31 0.36 2.75 16 20 C -0.08 -2.34 2.96 -10.79 -0.03 -2.37 16 21 C -0.13 -4.10 9.08 71.98 0.65 -3.45 16 22 C -0.14 -3.32 9.19 71.98 0.66 -2.65 16 23 O -0.20 -7.83 10.30 -2.55 -0.03 -7.85 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 32 H 0.13 3.44 6.45 -2.39 -0.02 3.42 16 33 H 0.02 0.84 6.19 -2.39 -0.01 0.82 16 34 H -0.02 -0.88 7.55 -2.39 -0.02 -0.90 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.06 2.51 6.58 -2.39 -0.02 2.50 16 37 H 0.04 1.20 8.00 -2.39 -0.02 1.19 16 38 H 0.08 2.00 6.67 -2.39 -0.02 1.99 16 39 H 0.04 1.66 7.74 -2.39 -0.02 1.64 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.13 358.35 3.65 -68.49 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.89 Total: 14.83 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 5.61 Total: -26.89 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -3.12 Total: -84.20 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.62 Total: -19.96 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.72 kcal Total: -72.13 3.65 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768154437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.390 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds